Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002176

Physical Location & Seq

Genomic Coordinates Forward (+)

7935244 .. 7936900

Gene Structure 1657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAAGACGAACCAGGAAGCGAAAATGAAGCAGACACCATAGTTGCTTCACCACTTGCAAAATGGAGAATCGAATTCTCGAAATCGTTTCAGAATTACTTAGACAGATCTGCTCCTAACATTGTTCGAAGATGGCTTGTGACTTTAGTCGCTGCAGTGATCTATATCTATAGGGTTTACTCTGTTTATGGATACTTCGTTATCTCTTATGGCTTAGCTACTTATATCTTAAATCTCTTGATTGGTTTCCTTTCCCCTAAAGTTGATCCTGAACTTGAAGCTTTGGATCCTGATTCTTTACCTGTTGATGAGTCTGATGAGTATAAGCCCTTTGTTCGTCGTCTTCCTGAGTTCAAGTTCTGGTATGCAGCGACTAAAGCATTTGTTGTTGCATTTGTGATGACATTCTTCTCTTTCCTGGATGTGCCTGTGTTCTGGCCGATCTTGTTGTGTTACTGGTTGGTTTTGTATTCTTTAACTATGAAACGCTTAATCGTGCACATGTTCAAGTATAGATACTTTCCTTTCGATGTAAGAAAGCCTGTGAAGCTGCTCAAGTTTCTTGTAAACAGTGTCCTGACCTTTTTAAGACTCAAGAAGGGTGATGGTGGAGATGATAGGCCCAGCAGCAGCAATTCATCTCAGGGAAATGAAAAACAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005801 GO:0006810 GO:0006890 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

221

Amino Acids

25.73

Weight (kDa)

7.71

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	24 - 181	1.5e-63	Rer1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18240 AT2G18240
fragaria_vesca	FvH4_1g12980 FvH4_1g12980
malus_domestica	MD02G1144300.v1.1 MD12G1092000.v1.1 MD15G1257900.v1.1 MD15G1258000.v1.1
prunus_persica	Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1
pyrus_communis	pycom02g11420 pycom15g22550 pycom15g22560
rosa_chinensis	RchiOBHm_Chr2g0101041 RchiOBHm_Chr2g0101051 RchiOBHm_Chr6g0247461 RchiOBHm_Chr6g0301161
rosa_laevigata	RLG00000017047
rosa_multiflora	Rmu_co7998428.1_g000001 Rmu_sc0000147.1_g000085 Rmu_sc0000193.1_g000024 Rmu_sc0001862.1_g000002 Rmu_sc0002886.1_g000003 Rmu_sc0007698.1_g000016 Rmu_sc0007698.1_g000017
rosa_roxburghii	Rroxscaffold_2G00141610
rosa_rugosa	Rorug02G0096300 Rorug07G0032000
rosa_samantha	Rh2AG142700 Rh2AG142800 Rh2BG147800 Rh2BG147900 Rh2CG149100 Rh2CG149300 Rh2DG148300 Rh2DG148400 Rh4DG139700 Rh5AG160300 Rh6AG040800 Rh6BG035900
rosa_wichuraiana	Rw2G011240 Rw4G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	260, 281, 294
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	3 cut(s)	278, 355, 508
AjnI	CCWGG	2 cut(s)	13, 417
AluBI	AGCT	3 cut(s)	218, 281, 550
AluI	AGCT	3 cut(s)	218, 281, 550
Alw21I	GWGCWC	1 cut(s)	501
Alw44I	GTGCAC	1 cut(s)	497
AlwI	GGATC	3 cut(s)	260, 281, 294
AoxI	GGCC	2 cut(s)	437, 620
ApaLI	GTGCAC	1 cut(s)	497
ApeKI	GCWGC	5 cut(s)	152, 368, 550, 627, 630
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	621
AsuHPI	GGTGA	2 cut(s)	42, 614
AsuII	TTCGAA	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	501
BamHI	GGATCC	1 cut(s)	286
BbsI	GAAGAC	2 cut(s)	12, 335
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	5 cut(s)	139, 380, 537, 639, 642
BccI	CCATC	2 cut(s)	126, 599
BciT130I	CCWGG	2 cut(s)	15, 419
BciVI	GTATCC	1 cut(s)	185
BfmI	CTRYAG	2 cut(s)	153, 169
BfuI	GTATCC	1 cut(s)	185
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	5 cut(s)	153, 369, 551, 628, 631
BlpI	GCTNAGC	1 cut(s)	214
BlsI	GCNGC	5 cut(s)	154, 370, 552, 629, 632
Bme1390I	CCNGG	2 cut(s)	15, 419
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	2 cut(s)	15, 419
BoxI	GACNNNNGTC	1 cut(s)	146
BpiI	GAAGAC	2 cut(s)	12, 335
Bpu1102I	GCTNAGC	1 cut(s)	214
Bpu14I	TTCGAA	1 cut(s)	127
BpuEI	CTTGAG	2 cut(s)	539, 578
BsaBI	GATNNNNATC	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	461
Bse8I	GATNNNNATC	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	15, 419
BseGI	GGATG	1 cut(s)	427
BseJI	GATNNNNATC	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	339, 656
BseNI	ACTGG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	501
BseXI	GCAGC	5 cut(s)	139, 380, 537, 639, 642
BseYI	CCCAGC	1 cut(s)	623
BshFI	GGCC	2 cut(s)	439, 622
BsiHKAI	GWGCWC	1 cut(s)	501
BsnI	GGCC	2 cut(s)	439, 622
Bsp119I	TTCGAA	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	5 cut(s)	107, 159, 265, 286, 441
Bsp1720I	GCTNAGC	1 cut(s)	214
BspANI	GGCC	2 cut(s)	439, 622
BspCNI	CTCAG	2 cut(s)	340, 655
BspLI	GGNNCC	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	157
BspPI	GGATC	3 cut(s)	260, 281, 294
BspT104I	TTCGAA	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	461
BssMI	GATC	5 cut(s)	107, 159, 265, 286, 441
Bst2UI	CCWGG	2 cut(s)	15, 419
Bst4CI	ACNGT	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	127
BstDEI	CTNAG	4 cut(s)	100, 214, 348, 642
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	5 cut(s)	110, 162, 268, 289, 444
BstMBI	GATC	5 cut(s)	107, 159, 265, 286, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 547
BstNI	CCWGG	2 cut(s)	15, 419
BstNSI	RCATGY	1 cut(s)	505
BstPAI	GACNNNNGTC	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	13, 417
BstSFI	CTRYAG	2 cut(s)	153, 169
BstSLI	GKGCMC	1 cut(s)	501
BstV1I	GCAGC	5 cut(s)	139, 380, 537, 639, 642
BstV2I	GAAGAC	2 cut(s)	12, 335
BstX2I	RGATCY	2 cut(s)	107, 286
BstYI	RGATCY	2 cut(s)	107, 286
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	439, 622
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	162, 577
Cfr13I	GGNCC	1 cut(s)	621
CviAII	CATG	1 cut(s)	502
CviJI	RGCY	9 cut(s)	136, 213, 218, 281, 328, 439, 541, 550, 622
CviKI_1	RGCY	9 cut(s)	136, 213, 218, 281, 328, 439, 541, 550, 622
DdeI	CTNAG	4 cut(s)	100, 214, 348, 642
DpnI	GATC	5 cut(s)	109, 161, 267, 288, 443
DpnII	GATC	5 cut(s)	107, 159, 265, 286, 441
EaeI	YGGCCR	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	13, 417
FaeI	CATG	1 cut(s)	505
FatI	CATG	1 cut(s)	501
Fnu4HI	GCNGC	5 cut(s)	153, 369, 551, 628, 631
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	5 cut(s)	153, 369, 551, 628, 631
GluI	GCNGC	5 cut(s)	153, 369, 551, 628, 631
GsaI	CCCAGC	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	439, 622
Hin1II	CATG	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	4 cut(s)	69, 293, 311, 591
HphI	GGTGA	2 cut(s)	42, 614
Hpy166II	GTNNAC	3 cut(s)	178, 499, 568
Hpy188I	TCNGA	2 cut(s)	93, 316
Hpy188III	TCNNGA	7 cut(s)	79, 238, 269, 290, 347, 577, 595
Hpy8I	GTNNAC	3 cut(s)	178, 499, 568
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	1 cut(s)	572
HpyCH4V	TGCA	5 cut(s)	59, 155, 368, 392, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 547
HpyF3I	CTNAG	4 cut(s)	100, 214, 348, 642
Hsp92II	CATG	1 cut(s)	505
Kzo9I	GATC	5 cut(s)	107, 159, 265, 286, 441
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	5 cut(s)	139, 380, 537, 639, 642
MaeIII	GTNAC	2 cut(s)	139, 452
MalI	GATC	5 cut(s)	109, 161, 267, 288, 443
MboI	GATC	5 cut(s)	107, 159, 265, 286, 441
MboII	GAAGA	4 cut(s)	17, 141, 335, 400
MflI	RGATCY	2 cut(s)	107, 286
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	3 cut(s)	74, 94, 634
MlyI	GAGTC	2 cut(s)	320, 585
MseI	TTAA	4 cut(s)	230, 476, 491, 587
MspR9I	CCNGG	2 cut(s)	15, 419
MvaI	CCWGG	2 cut(s)	15, 419
MwoI	GCNNNNNNNGC	2 cut(s)	377, 547
NdeII	GATC	5 cut(s)	107, 159, 265, 286, 441
NlaIII	CATG	1 cut(s)	505
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	127
PciI	ACATGT	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	69, 293
PfoI	TCCNGGA	1 cut(s)	417
PkrI	GCNGC	5 cut(s)	154, 370, 552, 629, 632
PleI	GAGTC	2 cut(s)	319, 585
PpsI	GAGTC	2 cut(s)	319, 585
PscI	ACATGT	1 cut(s)	501
PshAI	GACNNNNGTC	1 cut(s)	146
Psp6I	CCWGG	2 cut(s)	13, 417
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	2 cut(s)	13, 417
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	621
PstI	CTGCAG	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	107, 286
SaqAI	TTAA	4 cut(s)	230, 476, 491, 587
SatI	GCNGC	5 cut(s)	153, 369, 551, 628, 631
Sau3AI	GATC	5 cut(s)	107, 159, 265, 286, 441
Sau96I	GGNCC	1 cut(s)	621
SchI	GAGTC	2 cut(s)	320, 585
ScrFI	CCNGG	2 cut(s)	15, 419
SduI	GDGCHC	1 cut(s)	501
SetI	ASST	5 cut(s)	220, 283, 304, 552, 584
SfcI	CTRYAG	2 cut(s)	153, 169
SfuI	TTCGAA	1 cut(s)	127
SmlI	CTYRAG	2 cut(s)	554, 593
SmoI	CTYRAG	2 cut(s)	554, 593
Sse9I	AATT	3 cut(s)	74, 94, 634
StyD4I	CCNGG	2 cut(s)	13, 417
TaaI	ACNGT	1 cut(s)	572
TaqI	TCGA	4 cut(s)	72, 80, 127, 528
TasI	AATT	3 cut(s)	74, 94, 634
TfiI	GAWTC	2 cut(s)	69, 293
Tru1I	TTAA	4 cut(s)	230, 476, 491, 587
Tru9I	TTAA	4 cut(s)	230, 476, 491, 587
TscAI	CASTG	2 cut(s)	162, 577
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	5 cut(s)	152, 368, 550, 627, 630
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	4 cut(s)	42, 497, 627, 666
TspRI	CASTG	2 cut(s)	162, 577
VneI	GTGCAC	1 cut(s)	497
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.