RLG00000017047

Rer1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002176
Physical Location & Seq
Forward (+)
12405647 .. 12408257
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017047

Sequence Viewer

Length: 633 bp
ATGGGCGAATCACCTGTGATAGAAATTTGGTCCAAGAAAACAGTAAGTAAATCTGTGCTGCTTGACCCGACCCGGTCTCTCGGCCTTCTGACTAGTACGCGAGTGAATCACGCTGTCCTTTATCAGACGCAACCCAATAGCTTAGCGGCAACCGTCGTGACTTCCTCGTCTTGCTCGTTTTGGCTGTCCACGCTCGAAACCCTAATTCCAGAGATTCGCGGCGAAAATCACAACCCCGACTCCGATGGAGGGACTCGGAAGCGACGGAGCGGCGGAGACGTCACCAGTGGCCCAATGGAAGAGCGATTTCTCGAGAGCATTCCAGTACTATCTGGATCGGTCCACGCCTCACACGCTTCAGAGGATTTTGGAGTTATTAAGTATATGGATGTTGTATTGATTTTGTACTCACTGGTTCTTTTGACTTTCAGGTATTCAATCACAAAGGCTTTCGTTATTGCATTTATCATGACCTTCATCTCTGTACTGGATGTGCCTGTTTTCTGGCCGATATTGTTATGCTACTGGATTGTGCTATTTGTCCTCACAATGAAACGACAGATCCTACACATGATCAAATACAAATATGTCCCATTTGATATTGGAAAGCAGAGGTACACTGGAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

211

Amino Acids

23.64

Weight (kDa)

9.2

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 142 - 207 3.4e-28 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
AatII GACGTC 1 cut(s) 282
AccBSI CCGCTC 1 cut(s) 270
AccII CGCG 2 cut(s) 100, 219
AciI CCGC 4 cut(s) 146, 219, 270, 273
AclWI GGATC 2 cut(s) 343, 556
AcoI YGGCCR 1 cut(s) 506
AcsI RAATTY 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 5 cut(s) 97, 327, 407, 486, 617
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 1 cut(s) 438
AhlI ACTAGT 1 cut(s) 92
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
Alw26I GTCTC 2 cut(s) 81, 270
AlwI GGATC 2 cut(s) 343, 556
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 3 cut(s) 82, 289, 506
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 24
AspS9I GGNCC 3 cut(s) 30, 290, 340
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 3, 274
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 2 cut(s) 30, 340
BbvI GCAGC 1 cut(s) 45
BccI CCATC 1 cut(s) 239
BclI TGATCA 1 cut(s) 573
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 2 cut(s) 81, 270
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 1 cut(s) 93
BisI GCNGC 4 cut(s) 59, 147, 220, 271
BlpI GCTNAGC 1 cut(s) 142
BlsI GCNGC 4 cut(s) 60, 148, 221, 272
BmcAI AGTACT 1 cut(s) 327
Bme1390I CCNGG 1 cut(s) 73
Bme18I GGWCC 2 cut(s) 30, 340
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 3 cut(s) 30, 290, 340
BmrFI CCNGG 1 cut(s) 73
Bpu1102I GCTNAGC 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 6 cut(s) 285, 323, 417, 492, 530, 625
BseGI GGATG 2 cut(s) 394, 496
BseLI CCNNNNNNNGG 1 cut(s) 249
BseNI ACTGG 6 cut(s) 285, 323, 417, 492, 530, 625
BseXI GCAGC 1 cut(s) 45
Bsh1236I CGCG 2 cut(s) 100, 219
BshFI GGCC 3 cut(s) 84, 291, 508
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 73
BslFI GGGAC 2 cut(s) 265, 575
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 2 cut(s) 81, 270
BsmBI CGTCTC 1 cut(s) 270
BsmFI GGGAC 2 cut(s) 265, 575
BsmI GAATGC 1 cut(s) 318
BsnI GGCC 3 cut(s) 84, 291, 508
Bso31I GGTCTC 1 cut(s) 81
BsoBI CYCGRG 1 cut(s) 311
Bsp143I GATC 3 cut(s) 335, 561, 573
Bsp1720I GCTNAGC 1 cut(s) 142
BspACI CCGC 4 cut(s) 146, 219, 270, 273
BspANI GGCC 3 cut(s) 84, 291, 508
BspFNI CGCG 2 cut(s) 100, 219
BspHI TCATGA 1 cut(s) 468
BspPI GGATC 2 cut(s) 343, 556
BspQI GCTCTTC 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 270
BsrI ACTGG 6 cut(s) 285, 323, 417, 492, 530, 625
BssMI GATC 3 cut(s) 335, 561, 573
BssNI GRCGYC 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 43, 154
Bst6I CTCTTC 1 cut(s) 294
BstACI GRCGYC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 142
BstF5I GGATG 2 cut(s) 394, 496
BstFNI CGCG 2 cut(s) 100, 219
BstKTI GATC 3 cut(s) 338, 564, 576
BstMAI GTCTC 2 cut(s) 81, 270
BstMBI GATC 3 cut(s) 335, 561, 573
BstMWI GCNNNNNNNGC 2 cut(s) 190, 353
BstSCI CCNGG 1 cut(s) 71
BstUI CGCG 2 cut(s) 100, 219
BstV1I GCAGC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 561
BstYI RGATCY 1 cut(s) 561
BsuRI GGCC 3 cut(s) 84, 291, 508
BtsCI GGATG 2 cut(s) 394, 496
BtsIMutI CAGTG 3 cut(s) 292, 410, 618
CciI TCATGA 1 cut(s) 468
Cfr13I GGNCC 3 cut(s) 30, 290, 340
CseI GACGC 1 cut(s) 136
Csp6I GTAC 5 cut(s) 96, 326, 406, 485, 616
CviAII CATG 2 cut(s) 469, 571
CviJI RGCY 6 cut(s) 84, 141, 184, 291, 449, 508
CviKI_1 RGCY 6 cut(s) 84, 141, 184, 291, 449, 508
CviQI GTAC 5 cut(s) 96, 326, 406, 485, 616
DdeI CTNAG 1 cut(s) 142
DpnI GATC 3 cut(s) 337, 563, 575
DpnII GATC 3 cut(s) 335, 561, 573
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 506
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
EciI GGCGGA 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 81
Eco47I GGWCC 2 cut(s) 30, 340
Eco57I CTGAAG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 311
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 2 cut(s) 472, 574
FaiI YATR 6 cut(s) 384, 386, 470, 520, 572, 588
FaqI GGGAC 2 cut(s) 265, 575
FatI CATG 2 cut(s) 468, 570
FbaI TGATCA 1 cut(s) 573
Fnu4HI GCNGC 4 cut(s) 59, 147, 220, 271
FokI GGATG 2 cut(s) 401, 503
Fsp4HI GCNGC 4 cut(s) 59, 147, 220, 271
FspBI CTAG 1 cut(s) 93
GluI GCNGC 4 cut(s) 59, 147, 220, 271
HaeIII GGCC 3 cut(s) 84, 291, 508
HapII CCGG 1 cut(s) 73
HgaI GACGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 2 cut(s) 472, 574
HinfI GANTC 5 cut(s) 8, 106, 214, 239, 253
HpaII CCGG 1 cut(s) 73
HphI GGTGA 2 cut(s) 3, 274
Hpy166II GTNNAC 3 cut(s) 189, 343, 618
Hpy188I TCNGA 5 cut(s) 90, 126, 244, 258, 361
Hpy188III TCNNGA 6 cut(s) 157, 209, 311, 313, 333, 469
Hpy8I GTNNAC 3 cut(s) 189, 343, 618
Hpy99I CGWCG 2 cut(s) 158, 267
HpyAV CCTTC 2 cut(s) 95, 484
HpyCH4III ACNGT 2 cut(s) 43, 154
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 353
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 2 cut(s) 472, 574
Ksp22I TGATCA 1 cut(s) 573
Kzo9I GATC 3 cut(s) 335, 561, 573
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 267
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 2 cut(s) 157, 280
MalI GATC 3 cut(s) 337, 563, 575
MbiI CCGCTC 1 cut(s) 270
MboI GATC 3 cut(s) 335, 561, 573
MboII GAAGA 1 cut(s) 311
MflI RGATCY 1 cut(s) 561
MluCI AATT 2 cut(s) 24, 204
MlyI GAGTC 2 cut(s) 233, 247
MnlI CCTC 6 cut(s) 175, 242, 355, 358, 554, 606
MseI TTAA 1 cut(s) 378
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 73
Mva1269I GAATGC 1 cut(s) 318
MvnI CGCG 2 cut(s) 100, 219
MwoI GCNNNNNNNGC 2 cut(s) 190, 353
NciI CCSGG 1 cut(s) 73
NdeII GATC 3 cut(s) 335, 561, 573
NlaIII CATG 2 cut(s) 472, 574
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 2 cut(s) 157, 280
PaeR7I CTCGAG 1 cut(s) 311
PagI TCATGA 1 cut(s) 468
PciSI GCTCTTC 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PctI GAATGC 1 cut(s) 318
PfeI GAWTC 3 cut(s) 8, 106, 214
PflFI GACNNNGTC 1 cut(s) 73
PkrI GCNGC 4 cut(s) 60, 148, 221, 272
PleI GAGTC 2 cut(s) 233, 247
PpsI GAGTC 2 cut(s) 233, 247
PspPI GGNCC 3 cut(s) 30, 290, 340
PsuI RGATCY 1 cut(s) 561
PsyI GACNNNGTC 1 cut(s) 73
RsaI GTAC 5 cut(s) 97, 327, 407, 486, 617
RsaNI GTAC 5 cut(s) 96, 326, 406, 485, 616
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 4 cut(s) 59, 147, 220, 271
Sau3AI GATC 3 cut(s) 335, 561, 573
Sau96I GGNCC 3 cut(s) 30, 290, 340
ScaI AGTACT 1 cut(s) 327
SchI GAGTC 2 cut(s) 233, 247
ScrFI CCNGG 1 cut(s) 73
SetI ASST 6 cut(s) 16, 143, 282, 434, 476, 617
Sfr274I CTCGAG 1 cut(s) 311
SinI GGWCC 2 cut(s) 30, 340
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 2 cut(s) 24, 204
SsiI CCGC 4 cut(s) 146, 219, 270, 273
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 71
TaaI ACNGT 2 cut(s) 43, 154
TaiI ACGT 1 cut(s) 282
TaqI TCGA 2 cut(s) 195, 312
TaqII GACCGA 1 cut(s) 328
TasI AATT 2 cut(s) 24, 204
TatI WGTACW 3 cut(s) 325, 405, 484
TauI GCSGC 3 cut(s) 149, 222, 273
TfiI GAWTC 3 cut(s) 8, 106, 214
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 3 cut(s) 292, 417, 625
TseFI GTSAC 2 cut(s) 157, 280
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 2 cut(s) 157, 280
TspDTI ATGAA 2 cut(s) 466, 566
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 3 cut(s) 292, 417, 625
Tth111I GACNNNGTC 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 30, 340
XapI RAATTY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 311
XspI CTAG 1 cut(s) 93
ZraI GACGTC 1 cut(s) 280
ZrmI AGTACT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.