Rh5AG160300

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002176
Physical Location & Seq
Reverse (-)
17170743 .. 17186621
15879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG160300.1

Sequence Viewer

Length: 513 bp
ATGAGATTCGCGGCGAAAATCACAACCCCGATTCGGATGGAGGGACTCGGCAGCGACCGAGCAGCGGAGTTGTCACCAGTGGCCCAGTGGAAGAGCGATTTCTCGAGAGCATTCCAGTACTACCTGGATCGGTCCACGCCTCACACACTTCAGAGGTGGCTTGGAACCCTAGTTGTGGCGATGATCTACATTATGCGAGTCTACTATGTCCAGGGCTTCTATGTGGTCTCGTATGGGCTCGGAATCTACTTCTTGAACCTCTTGATTGGCTTCTTCTCACCCAAGGTTGACCCGGAGCTTGAACCTTTGGATGGCCCTTCACTGCCTACCAAAGGTGCTGATGAGTTCAAGCCTTTAGTTCGCCGCCTCCCCGAGTTTAAGTTCTGGTATTCAATCACAAAGGCTTTTGTTATTGCATTTATCATGACCTTCATCTCTGTACTGGATGTGCCTGTTTTCTGGCCGATATTGTTATGCTACTGGATTGTGCTATTTGTCCTCACAATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

170

Amino Acids

19.73

Weight (kDa)

9.18

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 30 - 170 1.2e-61 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 201
AccII CGCG 1 cut(s) 11
AciI CCGC 3 cut(s) 11, 65, 364
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 461
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 2 cut(s) 119, 441
AfiI CCNNNNNNNGG 5 cut(s) 33, 64, 175, 311, 332
AgsI TTSAA 4 cut(s) 256, 302, 349, 393
AjnI CCWGG 2 cut(s) 123, 210
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 1 cut(s) 135
Ama87I CYCGRG 2 cut(s) 103, 371
AoxI GGCC 3 cut(s) 81, 313, 461
ApeKI GCWGC 2 cut(s) 51, 62
AspS9I GGNCC 3 cut(s) 82, 132, 314
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 2 cut(s) 66, 270
AvaI CYCGRG 2 cut(s) 103, 371
AvaII GGWCC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 63, 74
BccI CCATC 2 cut(s) 31, 305
BciT130I CCWGG 2 cut(s) 125, 212
BcnI CCSGG 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 170
BisI GCNGC 4 cut(s) 12, 52, 63, 364
BlsI GCNGC 4 cut(s) 13, 53, 64, 365
BmcAI AGTACT 1 cut(s) 119
Bme1390I CCNGG 3 cut(s) 125, 212, 293
Bme18I GGWCC 1 cut(s) 132
BmeT110I CYCGRG 2 cut(s) 103, 371
BmgT120I GGNCC 3 cut(s) 82, 132, 314
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 3 cut(s) 125, 212, 293
BmrI ACTGGG 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 2 cut(s) 211, 282
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 64, 175, 311, 332
Bse1I ACTGG 5 cut(s) 77, 85, 115, 447, 485
BseBI CCWGG 2 cut(s) 125, 212
BseDI CCNNGG 2 cut(s) 211, 282
BseGI GGATG 3 cut(s) 42, 316, 451
BseLI CCNNNNNNNGG 5 cut(s) 33, 64, 175, 311, 332
BseNI ACTGG 5 cut(s) 77, 85, 115, 447, 485
BseXI GCAGC 2 cut(s) 63, 74
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 3 cut(s) 83, 315, 463
BsiEI CGRYCG 1 cut(s) 58
BsiHKCI CYCGRG 2 cut(s) 103, 371
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 5 cut(s) 33, 64, 175, 311, 332
BsmAI GTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 3 cut(s) 83, 315, 463
Bso31I GGTCTC 1 cut(s) 232
BsoBI CYCGRG 2 cut(s) 103, 371
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 127, 183
BspACI CCGC 3 cut(s) 11, 65, 364
BspANI GGCC 3 cut(s) 83, 315, 463
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 1 cut(s) 423
BspLI GGNNCC 1 cut(s) 166
BspPI GGATC 1 cut(s) 135
BspQI GCTCTTC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 232
BsrI ACTGG 5 cut(s) 77, 85, 115, 447, 485
BssECI CCNNGG 2 cut(s) 211, 282
BssMI GATC 2 cut(s) 127, 183
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 125, 212
Bst6I CTCTTC 1 cut(s) 86
BstENI CCTNNNNNAGG 1 cut(s) 330
BstF5I GGATG 3 cut(s) 42, 316, 451
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 2 cut(s) 130, 186
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 127, 183
BstMCI CGRYCG 1 cut(s) 58
BstNI CCWGG 2 cut(s) 125, 212
BstSCI CCNGG 3 cut(s) 123, 210, 291
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 63, 74
BsuRI GGCC 3 cut(s) 83, 315, 463
BtgZI GCGATG 1 cut(s) 194
BtsCI GGATG 3 cut(s) 42, 316, 451
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 3 cut(s) 84, 92, 320
CciI TCATGA 1 cut(s) 423
Cfr13I GGNCC 3 cut(s) 82, 132, 314
Csp6I GTAC 2 cut(s) 118, 440
CviAII CATG 1 cut(s) 424
CviQI GTAC 2 cut(s) 118, 440
DpnI GATC 2 cut(s) 129, 185
DpnII GATC 2 cut(s) 127, 183
EaeI YGGCCR 1 cut(s) 461
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 134
Eco88I CYCGRG 2 cut(s) 103, 371
EcoNI CCTNNNNNAGG 1 cut(s) 330
EcoRII CCWGG 2 cut(s) 123, 210
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 1 cut(s) 427
FaiI YATR 6 cut(s) 194, 207, 222, 234, 425, 475
FaqI GGGAC 1 cut(s) 57
FatI CATG 1 cut(s) 423
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 4 cut(s) 12, 52, 63, 364
FokI GGATG 3 cut(s) 49, 323, 458
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 4 cut(s) 12, 52, 63, 364
FspBI CTAG 1 cut(s) 170
GluI GCNGC 4 cut(s) 12, 52, 63, 364
HaeIII GGCC 3 cut(s) 83, 315, 463
HapII CCGG 1 cut(s) 293
Hin1II CATG 1 cut(s) 427
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 5 cut(s) 6, 31, 45, 198, 243
HpaII CCGG 1 cut(s) 293
HphI GGTGA 2 cut(s) 66, 270
Hpy166II GTNNAC 3 cut(s) 135, 202, 289
Hpy188I TCNGA 3 cut(s) 36, 153, 242
Hpy188III TCNNGA 5 cut(s) 103, 105, 253, 262, 424
Hpy8I GTNNAC 3 cut(s) 135, 202, 289
HpyAV CCTTC 2 cut(s) 327, 439
HpyCH4V TGCA 1 cut(s) 416
Hsp92II CATG 1 cut(s) 427
Kzo9I GATC 2 cut(s) 127, 183
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 1 cut(s) 295
Lsp1109I GCAGC 2 cut(s) 63, 74
MaeI CTAG 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 72
MalI GATC 2 cut(s) 129, 185
MboI GATC 2 cut(s) 127, 183
MboII GAAGA 2 cut(s) 103, 265
MhlI GDGCHC 1 cut(s) 240
MlyI GAGTC 2 cut(s) 39, 207
MnlI CCTC 6 cut(s) 34, 147, 150, 269, 377, 509
MseI TTAA 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 3 cut(s) 125, 212, 293
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 2 cut(s) 125, 212
MvnI CGCG 1 cut(s) 11
NciI CCSGG 1 cut(s) 293
NdeII GATC 2 cut(s) 127, 183
NlaIII CATG 1 cut(s) 427
NlaIV GGNNCC 1 cut(s) 166
NmeAIII GCCGAG 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 72
PaeR7I CTCGAG 1 cut(s) 103
PagI TCATGA 1 cut(s) 423
PciSI GCTCTTC 1 cut(s) 86
PctI GAATGC 1 cut(s) 110
PfeI GAWTC 3 cut(s) 6, 31, 243
PkrI GCNGC 4 cut(s) 13, 53, 64, 365
PleI GAGTC 2 cut(s) 39, 206
PpsI GAGTC 2 cut(s) 39, 206
Psp6I CCWGG 2 cut(s) 123, 210
PspGI CCWGG 2 cut(s) 123, 210
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 3 cut(s) 82, 132, 314
RsaI GTAC 2 cut(s) 119, 441
RsaNI GTAC 2 cut(s) 118, 440
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 4 cut(s) 12, 52, 63, 364
Sau3AI GATC 2 cut(s) 127, 183
Sau96I GGNCC 3 cut(s) 82, 132, 314
ScaI AGTACT 1 cut(s) 119
SchI GAGTC 2 cut(s) 39, 207
ScrFI CCNGG 3 cut(s) 125, 212, 293
SduI GDGCHC 1 cut(s) 240
SetI ASST 8 cut(s) 126, 158, 261, 288, 300, 307, 337, 431
Sfr274I CTCGAG 1 cut(s) 103
SinI GGWCC 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
SsiI CCGC 3 cut(s) 11, 65, 364
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 3 cut(s) 123, 210, 291
StyI CCWWGG 1 cut(s) 282
TaqI TCGA 1 cut(s) 104
TaqII GACCGA 2 cut(s) 72, 120
TatI WGTACW 2 cut(s) 117, 439
TauI GCSGC 2 cut(s) 14, 366
TfiI GAWTC 3 cut(s) 6, 31, 243
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 3 cut(s) 84, 92, 327
TseFI GTSAC 1 cut(s) 72
TseI GCWGC 2 cut(s) 51, 62
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 421
TspRI CASTG 3 cut(s) 84, 92, 327
VpaK11BI GGWCC 1 cut(s) 132
XagI CCTNNNNNAGG 1 cut(s) 330
XcmI CCANNNNNNNNNTGG 1 cut(s) 84
XhoI CTCGAG 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 1 cut(s) 170
ZrmI AGTACT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.