MD02G1144300.v1.1

Rer1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0002176
Physical Location & Seq
Forward (+)
11965979 .. 11968839
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1144300.v1.1.491

Sequence Viewer

Length: 408 bp
ATGATTTACATTCTGCGTGTGTACTATGTTCAGGGGTTCTATGTTGTCTCCTATGGTCTGGGGATCTACGTTTTGAATCTCTTGATCGGTTTCTTCTCGCCCAAGGTTGACCCGGAGCTTGAGGCCTTGGATGGGGCTTCATTGCCAACAAGTGGTTCTGATGAGTTTAAGCCTTTTGTTCGCCGCCTTCCCGAGTTTAAGTTCTGGTATTCCATCACAAAGGCATTCGTTATTGCATTTATCATGACCTTTATTTCTCTGCTGGACGTACCTGTTTTCTGGCCAATACTGCTATGCTACTGGATTGTTCTGTTTGTCCTCACAATGAAAAGGCAGATCCTACACATGATCAAATACAAATATGTTCCATTTGATATCGGAAAAAGGCGATACACTGGAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

136

Amino Acids

15.93

Weight (kDa)

9.52

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 1 - 132 2.4e-64 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 152
AciI CCGC 1 cut(s) 184
AclWI GGATC 2 cut(s) 71, 331
AcoI YGGCCR 1 cut(s) 281
AfaI GTAC 2 cut(s) 23, 270
AfiI CCNNNNNNNGG 2 cut(s) 132, 152
AgsI TTSAA 1 cut(s) 76
AjuI GAANNNNNNNTTGG 2 cut(s) 139, 171
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 2 cut(s) 71, 331
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 2 cut(s) 123, 281
AsuC2I CCSGG 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 191
BalI TGGCCA 1 cut(s) 283
BccI CCATC 2 cut(s) 125, 221
BclI TGATCA 1 cut(s) 348
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 52
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 102, 126
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 152
Bse1I ACTGG 2 cut(s) 305, 400
Bse3DI GCAATG 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 102, 126
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 132, 152
BseMI GCAATG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 305, 400
BshFI GGCC 2 cut(s) 125, 283
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 132, 152
BsmAI GTCTC 1 cut(s) 52
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 2 cut(s) 125, 283
BsoBI CYCGRG 1 cut(s) 191
Bsp143I GATC 4 cut(s) 63, 84, 336, 348
BspACI CCGC 1 cut(s) 184
BspANI GGCC 2 cut(s) 125, 283
BspHI TCATGA 1 cut(s) 243
BspPI GGATC 2 cut(s) 71, 331
BsrDI GCAATG 1 cut(s) 140
BsrI ACTGG 2 cut(s) 305, 400
BssECI CCNNGG 2 cut(s) 102, 126
BssMI GATC 4 cut(s) 63, 84, 336, 348
BssT1I CCWWGG 2 cut(s) 102, 126
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 4 cut(s) 66, 87, 339, 351
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 4 cut(s) 63, 84, 336, 348
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 111
BstX2I RGATCY 2 cut(s) 63, 336
BstYI RGATCY 2 cut(s) 63, 336
BsuRI GGCC 2 cut(s) 125, 283
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 393
CciI TCATGA 1 cut(s) 243
Csp6I GTAC 2 cut(s) 22, 269
CviAII CATG 2 cut(s) 244, 346
CviJI RGCY 5 cut(s) 118, 125, 137, 172, 283
CviKI_1 RGCY 5 cut(s) 118, 125, 137, 172, 283
CviQI GTAC 2 cut(s) 22, 269
DpnI GATC 4 cut(s) 65, 86, 338, 350
DpnII GATC 4 cut(s) 63, 84, 336, 348
EaeI YGGCCR 1 cut(s) 281
Eco130I CCWWGG 2 cut(s) 102, 126
Eco147I AGGCCT 1 cut(s) 125
Eco32I GATATC 1 cut(s) 376
Eco88I CYCGRG 1 cut(s) 191
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 2 cut(s) 102, 126
ErhI CCWWGG 2 cut(s) 102, 126
FaeI CATG 2 cut(s) 247, 349
FaiI YATR 7 cut(s) 27, 42, 54, 245, 295, 347, 363
FatI CATG 2 cut(s) 243, 345
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 184
HaeIII GGCC 2 cut(s) 125, 283
HapII CCGG 1 cut(s) 113
Hin1II CATG 2 cut(s) 247, 349
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 1 cut(s) 76
HpaII CCGG 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 22, 109
Hpy188I TCNGA 2 cut(s) 160, 380
Hpy188III TCNNGA 3 cut(s) 82, 191, 244
Hpy8I GTNNAC 2 cut(s) 22, 109
HpyAV CCTTC 1 cut(s) 197
HpyCH4IV ACGT 2 cut(s) 69, 267
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpySE526I ACGT 2 cut(s) 69, 267
Hsp92II CATG 2 cut(s) 247, 349
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 4 cut(s) 63, 84, 336, 348
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 9 cut(s) 17, 44, 126, 190, 248, 265, 285, 286, 381
MaeII ACGT 2 cut(s) 69, 267
MalI GATC 4 cut(s) 65, 86, 338, 350
MboI GATC 4 cut(s) 63, 84, 336, 348
MboII GAAGA 1 cut(s) 85
MflI RGATCY 2 cut(s) 63, 336
MlsI TGGCCA 1 cut(s) 283
MluNI TGGCCA 1 cut(s) 283
MnlI CCTC 2 cut(s) 115, 329
Mox20I TGGCCA 1 cut(s) 283
MscI TGGCCA 1 cut(s) 283
MseI TTAA 2 cut(s) 168, 198
Msp20I TGGCCA 1 cut(s) 283
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 113
NdeII GATC 4 cut(s) 63, 84, 336, 348
NlaIII CATG 2 cut(s) 247, 349
PagI TCATGA 1 cut(s) 243
PceI AGGCCT 1 cut(s) 125
PctI GAATGC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 76
PflMI CCANNNNNTGG 1 cut(s) 152
PkrI GCNGC 1 cut(s) 185
PsuI RGATCY 2 cut(s) 63, 336
RsaI GTAC 2 cut(s) 23, 270
RsaNI GTAC 2 cut(s) 22, 269
SaqAI TTAA 2 cut(s) 168, 198
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 4 cut(s) 63, 84, 336, 348
ScrFI CCNGG 1 cut(s) 113
SetI ASST 6 cut(s) 72, 108, 120, 251, 270, 274
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SseBI AGGCCT 1 cut(s) 125
SsiI CCGC 1 cut(s) 184
StuI AGGCCT 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 2 cut(s) 102, 126
TaiI ACGT 2 cut(s) 72, 270
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 2 cut(s) 168, 198
Tru9I TTAA 2 cut(s) 168, 198
TscAI CASTG 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 129, 341
TspRI CASTG 1 cut(s) 400
Van91I CCANNNNNTGG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.