FvH4_1g12980

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002176
Physical Location & Seq
Forward (+)
7163151 .. 7164993
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12980.t2

Sequence Viewer

Length: 552 bp
ATGGAAGGACTCGGAATCGACGGAGCGTCGGTGACGACGCCGGTGGCGCAGTGGAAGAGAGATTTCTCGAGAGCGTTCCAGTACTATCTGGATCGGTCGACGCCTCACACGCTTCACAGGTGGCTAGGAACCCTAGCAGTGGCGATGATCTACATTCTGCGCGTCTACTATGTCCAGGGCTTCTATGTGGTCTCGTATGGGCTCGGAATCTACGTCTTGAACCTCTTGATCGGGTTCTTCTCGCCCAAGGTTGACCCGGAGCTTGAGGCTTTGGATGGGGCTTCGTTGCCTACCAAAGGTGCCGATGAGTTCAGGCCTTTCGTTCGCCGCCTCCCGGAGTTTAAGTTCTGGTATTCCATCACAAAGGCTTTCCTTATTGCATTTGTCATGACCTTCATTTCTGTACTGGATGTGCCTGTTTTCTGGCCAATATTGTTATGCTACTGGATTGTGCTATTTGTACTCACAATGAAACGACAGATCCTACACATGATCAAATACAAATATGTCCCATTTGATATTGGAAAGCAGAGGTACACTGGAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

184

Amino Acids

21.35

Weight (kDa)

9.54

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 18 - 180 4.3e-76 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AccI GTMKAC 2 cut(s) 98, 165
AccII CGCG 1 cut(s) 162
AciI CCGC 1 cut(s) 328
AclWI GGATC 2 cut(s) 99, 475
AcoI YGGCCR 1 cut(s) 425
AcyI GRCGYC 2 cut(s) 38, 101
AfaI GTAC 4 cut(s) 83, 405, 462, 536
AfiI CCNNNNNNNGG 3 cut(s) 139, 296, 334
AgsI TTSAA 1 cut(s) 220
AhdI GACNNNNNGTC 1 cut(s) 25
AjnI CCWGG 1 cut(s) 174
AloI GAACNNNNNNTCC 2 cut(s) 329, 361
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 2 cut(s) 99, 475
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 2 cut(s) 314, 425
AspLEI GCGC 2 cut(s) 49, 162
AsuC2I CCSGG 2 cut(s) 257, 335
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 67
BalI TGGCCA 1 cut(s) 427
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 204
BccI CCATC 2 cut(s) 269, 365
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 1 cut(s) 492
BcnI CCSGG 2 cut(s) 257, 335
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 2 cut(s) 125, 134
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
BmcAI AGTACT 1 cut(s) 83
Bme1390I CCNGG 3 cut(s) 176, 257, 335
BmeRI GACNNNNNGTC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 67
BmiI GGNNCC 2 cut(s) 130, 301
BmrFI CCNGG 3 cut(s) 176, 257, 335
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 257, 335
BsaHI GRCGYC 2 cut(s) 38, 101
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 175, 246
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 329, 359
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 296, 334
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 4 cut(s) 79, 411, 449, 544
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 175, 246
BseGI GGATG 2 cut(s) 280, 415
BseLI CCNNNNNNNGG 3 cut(s) 139, 296, 334
BseNI ACTGG 4 cut(s) 79, 411, 449, 544
Bsh1236I CGCG 1 cut(s) 162
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 2 cut(s) 316, 427
BshNI GGYRCC 1 cut(s) 299
BsiEI CGRYCG 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 3 cut(s) 41, 257, 335
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 3 cut(s) 139, 296, 334
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 494
BsnI GGCC 2 cut(s) 316, 427
Bso31I GGTCTC 1 cut(s) 196
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 5 cut(s) 91, 147, 228, 480, 492
BspACI CCGC 1 cut(s) 328
BspANI GGCC 2 cut(s) 316, 427
BspFNI CGCG 1 cut(s) 162
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 130, 301
BspPI GGATC 2 cut(s) 99, 475
BspT107I GGYRCC 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 40
BsrI ACTGG 4 cut(s) 79, 411, 449, 544
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 175, 246
BssMI GATC 5 cut(s) 91, 147, 228, 480, 492
BssNI GRCGYC 2 cut(s) 38, 101
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 2 cut(s) 38, 101
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 280, 415
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 2 cut(s) 49, 162
BstKTI GATC 5 cut(s) 94, 150, 231, 483, 495
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 5 cut(s) 91, 147, 228, 480, 492
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 2 cut(s) 46, 109
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 3 cut(s) 174, 255, 333
BstUI CGCG 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 480
BstYI RGATCY 1 cut(s) 480
BsuRI GGCC 2 cut(s) 316, 427
BtgZI GCGATG 1 cut(s) 158
BtsCI GGATG 2 cut(s) 280, 415
BtsI GCAGTG 2 cut(s) 56, 144
BtsIMutI CAGTG 3 cut(s) 56, 144, 537
CciI TCATGA 1 cut(s) 387
CfoI GCGC 2 cut(s) 49, 162
Cfr10I RCCGGY 1 cut(s) 40
CseI GACGC 4 cut(s) 15, 46, 109, 151
Csp6I GTAC 4 cut(s) 82, 404, 461, 535
CviAII CATG 2 cut(s) 388, 490
CviJI RGCY 9 cut(s) 124, 180, 202, 262, 269, 281, 316, 368, 427
CviKI_1 RGCY 9 cut(s) 124, 180, 202, 262, 269, 281, 316, 368, 427
CviQI GTAC 4 cut(s) 82, 404, 461, 535
DpnI GATC 5 cut(s) 93, 149, 230, 482, 494
DpnII GATC 5 cut(s) 91, 147, 228, 480, 492
DriI GACNNNNNGTC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 50
Eam1105I GACNNNNNGTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 246
Eco147I AGGCCT 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 67
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 2 cut(s) 391, 493
FaiI YATR 7 cut(s) 171, 186, 198, 389, 439, 491, 507
FaqI GGGAC 1 cut(s) 494
FatI CATG 2 cut(s) 387, 489
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 2 cut(s) 98, 165
Fnu4HI GCNGC 1 cut(s) 328
FokI GGATG 2 cut(s) 287, 422
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 328
FspBI CTAG 2 cut(s) 125, 134
GlaI GCGC 2 cut(s) 48, 161
GluI GCNGC 1 cut(s) 328
HaeIII GGCC 2 cut(s) 316, 427
HapII CCGG 3 cut(s) 41, 257, 335
HgaI GACGC 4 cut(s) 15, 46, 109, 151
HhaI GCGC 2 cut(s) 49, 162
Hin1I GRCGYC 2 cut(s) 38, 101
Hin1II CATG 2 cut(s) 391, 493
Hin6I GCGC 2 cut(s) 47, 160
HinP1I GCGC 2 cut(s) 47, 160
HincII GTYRAC 2 cut(s) 99, 253
HindII GTYRAC 2 cut(s) 99, 253
HinfI GANTC 3 cut(s) 9, 15, 207
HpaII CCGG 3 cut(s) 41, 257, 335
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 4 cut(s) 99, 166, 253, 537
Hpy188I TCNGA 2 cut(s) 14, 206
Hpy188III TCNNGA 6 cut(s) 67, 69, 89, 217, 226, 388
Hpy8I GTNNAC 4 cut(s) 99, 166, 253, 537
Hpy99I CGWCG 4 cut(s) 23, 31, 40, 103
HpyAV CCTTC 1 cut(s) 403
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 1 cut(s) 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 109
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 2 cut(s) 38, 101
Hsp92II CATG 2 cut(s) 391, 493
HspAI GCGC 2 cut(s) 47, 160
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 5 cut(s) 91, 147, 228, 480, 492
LmnI GCTCC 2 cut(s) 23, 259
MaeI CTAG 2 cut(s) 125, 134
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 31
MalI GATC 5 cut(s) 93, 149, 230, 482, 494
MboI GATC 5 cut(s) 91, 147, 228, 480, 492
MboII GAAGA 2 cut(s) 67, 229
MflI RGATCY 1 cut(s) 480
MhlI GDGCHC 1 cut(s) 204
MlsI TGGCCA 1 cut(s) 427
MluNI TGGCCA 1 cut(s) 427
MlyI GAGTC 1 cut(s) 3
MnlI CCTC 5 cut(s) 114, 233, 259, 341, 525
Mox20I TGGCCA 1 cut(s) 427
MscI TGGCCA 1 cut(s) 427
MseI TTAA 1 cut(s) 342
Msp20I TGGCCA 1 cut(s) 427
MspI CCGG 3 cut(s) 41, 257, 335
MspR9I CCNGG 3 cut(s) 176, 257, 335
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 46, 109
NciI CCSGG 2 cut(s) 257, 335
NdeII GATC 5 cut(s) 91, 147, 228, 480, 492
NlaIII CATG 2 cut(s) 391, 493
NlaIV GGNNCC 2 cut(s) 130, 301
NmuCI GTSAC 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 67
PagI TCATGA 1 cut(s) 387
PceI AGGCCT 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 2 cut(s) 15, 207
PfoI TCCNGGA 1 cut(s) 333
PkrI GCNGC 1 cut(s) 329
PleI GAGTC 1 cut(s) 3
PpsI GAGTC 1 cut(s) 3
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 130, 301
PsuI RGATCY 1 cut(s) 480
RsaI GTAC 4 cut(s) 83, 405, 462, 536
RsaNI GTAC 4 cut(s) 82, 404, 461, 535
SalI GTCGAC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 5 cut(s) 91, 147, 228, 480, 492
ScaI AGTACT 1 cut(s) 83
SchI GAGTC 1 cut(s) 3
ScrFI CCNGG 3 cut(s) 176, 257, 335
SduI GDGCHC 1 cut(s) 204
SetI ASST 8 cut(s) 122, 216, 225, 252, 264, 301, 395, 536
Sfr274I CTCGAG 1 cut(s) 67
SgrAI CRCCGGYG 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 2 cut(s) 67, 263
SmoI CTYRAG 2 cut(s) 67, 263
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 1 cut(s) 328
SspI AATATT 1 cut(s) 432
SspMI CTAG 2 cut(s) 125, 134
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 3 cut(s) 174, 255, 333
StyI CCWWGG 1 cut(s) 246
TaiI ACGT 1 cut(s) 216
TaqI TCGA 3 cut(s) 18, 68, 98
TaqII GACCGA 1 cut(s) 84
TatI WGTACW 3 cut(s) 81, 403, 460
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 2 cut(s) 15, 207
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 3 cut(s) 56, 144, 544
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 385, 485
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 3 cut(s) 56, 144, 544
XagI CCTNNNNNAGG 1 cut(s) 294
XhoI CTCGAG 1 cut(s) 67
XmiI GTMKAC 2 cut(s) 98, 165
XspI CTAG 2 cut(s) 125, 134
ZrmI AGTACT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.