Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002176

Physical Location & Seq

Genomic Coordinates Reverse (-)

16549448 .. 16551864

Gene Structure 2417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G157300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGGGACCAGGAAGTGAAGGAGCAGCAGCGGCACCGCTGGCTCAATGGAGGAGCGATTTTTCGAGAGCATTCCAGTACTATTTGGATCGGTCAACGCCTCACACTGTTAATCGGTGGCTAGGAACCCTTGCTGTGGCAATGATTTACATTCTGCGTGTGTACTATGTTCAAGGGTTCTATGTTATCTCCTATGGCCTGGGGATCTATGTCTTGAATCTCTTGATAGGCTTTTTCTCACCGAAGGTGGACCCGGAGCTTGAAGCCTTGGATGGGGCTTCATTGCCAACAAAAGGTGCTGATGAGTTTAGGCCTTTTGTTCGCCGCCTTCCCGAGTTTAAGTTCTGGTATTCCATCACAAAGGCATTTATTGTTGCATTTATGTTGACCTTCATTTCTGTGCTGGATGTACCTGTTTTCTGGCCAATATTGTTATGCTACTGGATTGTTCTATTTGTCCTCACGATGAAACGGCAGATCCTACACATGATCAAGTACAAATATGTTCCATTTGATATTGGAAAGCAGGTGACGGTACACTGGGAAGAAGTAACTGAATGGGAGCAGCTTTTCTGCAAATCTAAAAACAAAAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

200

Amino Acids

23.15

Weight (kDa)

8.77

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18240 AT2G18240
fragaria_vesca	FvH4_1g12980 FvH4_1g12980
malus_domestica	MD02G1144300.v1.1 MD12G1092000.v1.1 MD15G1257900.v1.1 MD15G1258000.v1.1
prunus_persica	Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1
pyrus_communis	pycom02g11420 pycom15g22550 pycom15g22560
rosa_chinensis	RchiOBHm_Chr2g0101041 RchiOBHm_Chr2g0101051 RchiOBHm_Chr6g0247461 RchiOBHm_Chr6g0301161
rosa_laevigata	RLG00000017047
rosa_multiflora	Rmu_co7998428.1_g000001 Rmu_sc0000147.1_g000085 Rmu_sc0000193.1_g000024 Rmu_sc0001862.1_g000002 Rmu_sc0002886.1_g000003 Rmu_sc0007698.1_g000016 Rmu_sc0007698.1_g000017
rosa_roxburghii	Rroxscaffold_2G00141610
rosa_rugosa	Rorug02G0096300 Rorug07G0032000
rosa_samantha	Rh2AG142700 Rh2AG142800 Rh2BG147800 Rh2BG147900 Rh2CG149100 Rh2CG149300 Rh2DG148300 Rh2DG148400 Rh4DG139700 Rh5AG160300 Rh6AG040800 Rh6BG035900
rosa_wichuraiana	Rw2G011240 Rw4G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	517
Acc36I	ACCTGC	1 cut(s)	517
AccB1I	GGYRCC	1 cut(s)	34
AciI	CCGC	3 cut(s)	32, 38, 325
AclWI	GGATC	3 cut(s)	96, 212, 472
AcoI	YGGCCR	1 cut(s)	422
AfaI	GTAC	5 cut(s)	80, 164, 411, 497, 537
AfiI	CCNNNNNNNGG	3 cut(s)	136, 273, 293
AgsI	TTSAA	3 cut(s)	173, 217, 263
AjnI	CCWGG	2 cut(s)	10, 198
AluBI	AGCT	2 cut(s)	259, 568
AluI	AGCT	2 cut(s)	259, 568
AlwI	GGATC	3 cut(s)	96, 212, 472
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	3 cut(s)	196, 311, 422
ApeKI	GCWGC	3 cut(s)	26, 29, 565
AspS9I	GGNCC	2 cut(s)	8, 250
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	231, 541
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	8, 250
BalI	TGGCCA	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	34
BbvI	GCAGC	3 cut(s)	38, 41, 577
BccI	CCATC	2 cut(s)	266, 362
BceAI	ACGGC	1 cut(s)	488
BciT130I	CCWGG	2 cut(s)	12, 200
BclI	TGATCA	1 cut(s)	489
BcnI	CCSGG	1 cut(s)	254
BfaI	CTAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	517
BisI	GCNGC	5 cut(s)	27, 30, 33, 325, 566
BlsI	GCNGC	5 cut(s)	28, 31, 34, 326, 567
BmcAI	AGTACT	1 cut(s)	80
Bme1390I	CCNGG	3 cut(s)	12, 200, 254
Bme18I	GGWCC	2 cut(s)	8, 250
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	8, 250
BmiI	GGNNCC	4 cut(s)	9, 36, 127, 252
BmrFI	CCNGG	3 cut(s)	12, 200, 254
BmrI	ACTGGG	1 cut(s)	550
BmuI	ACTGGG	1 cut(s)	550
BpuMI	CCSGG	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	199, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 273, 293
Bse1I	ACTGG	3 cut(s)	76, 446, 545
Bse3DI	GCAATG	2 cut(s)	147, 281
BseBI	CCWGG	2 cut(s)	12, 200
BseDI	CCNNGG	2 cut(s)	199, 267
BseGI	GGATG	2 cut(s)	277, 412
BseLI	CCNNNNNNNGG	3 cut(s)	136, 273, 293
BseMI	GCAATG	2 cut(s)	147, 281
BseNI	ACTGG	3 cut(s)	76, 446, 545
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	3 cut(s)	38, 41, 577
BshFI	GGCC	3 cut(s)	198, 313, 424
BshNI	GGYRCC	1 cut(s)	34
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	136, 273, 293
BsmFI	GGGAC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	3 cut(s)	198, 313, 424
BsoBI	CYCGRG	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	88, 204, 477, 489
BspACI	CCGC	3 cut(s)	32, 38, 325
BspANI	GGCC	3 cut(s)	198, 313, 424
BspLI	GGNNCC	4 cut(s)	9, 36, 127, 252
BspMI	ACCTGC	1 cut(s)	517
BspPI	GGATC	3 cut(s)	96, 212, 472
BspT107I	GGYRCC	1 cut(s)	34
BsrDI	GCAATG	2 cut(s)	147, 281
BsrI	ACTGG	3 cut(s)	76, 446, 545
BssECI	CCNNGG	2 cut(s)	199, 267
BssMI	GATC	4 cut(s)	88, 204, 477, 489
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	12, 200
Bst4CI	ACNGT	2 cut(s)	109, 535
BstC8I	GCNNGC	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	277, 412
BstKTI	GATC	4 cut(s)	91, 207, 480, 492
BstMBI	GATC	4 cut(s)	88, 204, 477, 489
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 41
BstNI	CCWGG	2 cut(s)	12, 200
BstSCI	CCNGG	3 cut(s)	10, 198, 252
BstV1I	GCAGC	3 cut(s)	38, 41, 577
BstX2I	RGATCY	2 cut(s)	204, 477
BstYI	RGATCY	2 cut(s)	204, 477
BsuRI	GGCC	3 cut(s)	198, 313, 424
BtsCI	GGATG	2 cut(s)	277, 412
BtsIMutI	CAGTG	2 cut(s)	105, 538
BveI	ACCTGC	1 cut(s)	517
Cac8I	GCNNGC	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	8, 250
Csp6I	GTAC	5 cut(s)	79, 163, 410, 496, 536
CviAII	CATG	1 cut(s)	487
CviQI	GTAC	5 cut(s)	79, 163, 410, 496, 536
DpnI	GATC	4 cut(s)	90, 206, 479, 491
DpnII	GATC	4 cut(s)	88, 204, 477, 489
EaeI	YGGCCR	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	8, 250
Eco88I	CYCGRG	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	10, 198
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	490
FaiI	YATR	8 cut(s)	168, 183, 195, 210, 383, 436, 488, 504
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	1 cut(s)	486
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	5 cut(s)	27, 30, 33, 325, 566
FokI	GGATG	2 cut(s)	284, 419
Fsp4HI	GCNGC	5 cut(s)	27, 30, 33, 325, 566
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	5 cut(s)	27, 30, 33, 325, 566
HaeIII	GGCC	3 cut(s)	198, 313, 424
HapII	CCGG	1 cut(s)	254
Hin1II	CATG	1 cut(s)	490
HincII	GTYRAC	2 cut(s)	96, 387
HindII	GTYRAC	2 cut(s)	96, 387
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	231, 541
Hpy166II	GTNNAC	5 cut(s)	96, 163, 250, 387, 538
Hpy188III	TCNNGA	5 cut(s)	66, 214, 223, 332, 463
Hpy8I	GTNNAC	5 cut(s)	96, 163, 250, 387, 538
HpyAV	CCTTC	4 cut(s)	14, 238, 338, 400
HpyCH4III	ACNGT	2 cut(s)	109, 535
HpyCH4V	TGCA	2 cut(s)	377, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 41
Hsp92II	CATG	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	88, 204, 477, 489
LmnI	GCTCC	4 cut(s)	23, 54, 256, 562
Lsp1109I	GCAGC	3 cut(s)	38, 41, 577
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	2 cut(s)	529, 550
MalI	GATC	4 cut(s)	90, 206, 479, 491
MboI	GATC	4 cut(s)	88, 204, 477, 489
MboII	GAAGA	1 cut(s)	557
MflI	RGATCY	2 cut(s)	204, 477
MlsI	TGGCCA	1 cut(s)	424
MluNI	TGGCCA	1 cut(s)	424
MnlI	CCTC	3 cut(s)	45, 111, 470
Mox20I	TGGCCA	1 cut(s)	424
MscI	TGGCCA	1 cut(s)	424
MseI	TTAA	2 cut(s)	111, 339
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	424
MspA1I	CMGCKG	2 cut(s)	32, 40
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	3 cut(s)	12, 200, 254
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	2 cut(s)	12, 200
MwoI	GCNNNNNNNGC	2 cut(s)	32, 41
NciI	CCSGG	1 cut(s)	254
NdeII	GATC	4 cut(s)	88, 204, 477, 489
NlaIII	CATG	1 cut(s)	490
NlaIV	GGNNCC	4 cut(s)	9, 36, 127, 252
NmuCI	GTSAC	1 cut(s)	529
PaqCI	CACCTGC	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	313
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	5 cut(s)	28, 31, 34, 326, 567
Psp6I	CCWGG	2 cut(s)	10, 198
PspGI	CCWGG	2 cut(s)	10, 198
PspN4I	GGNNCC	4 cut(s)	9, 36, 127, 252
PspPI	GGNCC	2 cut(s)	8, 250
PsuI	RGATCY	2 cut(s)	204, 477
RsaI	GTAC	5 cut(s)	80, 164, 411, 497, 537
RsaNI	GTAC	5 cut(s)	79, 163, 410, 496, 536
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	111, 339
SatI	GCNGC	5 cut(s)	27, 30, 33, 325, 566
Sau3AI	GATC	4 cut(s)	88, 204, 477, 489
Sau96I	GGNCC	2 cut(s)	8, 250
ScaI	AGTACT	1 cut(s)	80
ScrFI	CCNGG	3 cut(s)	12, 200, 254
SetI	ASST	7 cut(s)	249, 261, 298, 392, 415, 531, 570
SinI	GGWCC	2 cut(s)	8, 250
SmiMI	CAYNNNNRTG	1 cut(s)	398
SseBI	AGGCCT	1 cut(s)	313
SsiI	CCGC	3 cut(s)	32, 38, 325
SspI	AATATT	1 cut(s)	429
SspMI	CTAG	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	3 cut(s)	10, 198, 252
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	109, 535
TaqI	TCGA	1 cut(s)	65
TaqII	GACCGA	1 cut(s)	81
TatI	WGTACW	3 cut(s)	78, 162, 495
TauI	GCSGC	2 cut(s)	35, 327
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	2 cut(s)	111, 339
Tru9I	TTAA	2 cut(s)	111, 339
TscAI	CASTG	2 cut(s)	112, 545
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	3 cut(s)	26, 29, 565
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	3 cut(s)	270, 382, 482
TspRI	CASTG	2 cut(s)	112, 545
VpaK11BI	GGWCC	2 cut(s)	8, 250
XspI	CTAG	1 cut(s)	122
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.