Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001862.1

Orthogroup ID

OG0002176

Physical Location & Seq

Genomic Coordinates Reverse (-)

4671 .. 6262

Gene Structure 1592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001862.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgtattggaggttaatgtattggaggcgaatctcctgtgatagaaatttggtccaagaaaacagaagtaaatctgggctgcttgacccgacccggtctcttggccttctgactagtacgcgggtgaatcacaccatcctttatcagacgcaacccaatagcttagcggcaaccgtcgtgacttcctcgtcttgctcgttttggctgtccacgctcgaaaccctaattccagagattcgcggcgaaaatcacaaccccgattccgatggagggacttggcagcgaccgagcggcggagacgtcaccagtggcccaatggaagagcgatttctcgagagcattccagtactatctggatcgggcttctatgtggtctcgtatgggctcggaatctacgtcttgaacctcttgattggcttcttctcaccgaaagttgacccggagcttgaacctttggatggcccttcactgccgaccaaaggtgctgatgagttcaagcctttcgttcgccgcctccccgagtttaagttctggtattccatcacaaaggctttcattattgcatttatcatgaccttcttctctgtgctggatgtgcctgttttctggccaatattgttatgctactggattgtgctttttgtcctcacaatgaaacgacagatcctacacatgatcaaatacaaatatgtcccatttgatattggaaagcagaggtacactggaaagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

244

Amino Acids

28.02

Weight (kDa)

9.06

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18240 AT2G18240
fragaria_vesca	FvH4_1g12980 FvH4_1g12980
malus_domestica	MD02G1144300.v1.1 MD12G1092000.v1.1 MD15G1257900.v1.1 MD15G1258000.v1.1
prunus_persica	Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1
pyrus_communis	pycom02g11420 pycom15g22550 pycom15g22560
rosa_chinensis	RchiOBHm_Chr2g0101041 RchiOBHm_Chr2g0101051 RchiOBHm_Chr6g0247461 RchiOBHm_Chr6g0301161
rosa_laevigata	RLG00000017047
rosa_multiflora	Rmu_co7998428.1_g000001 Rmu_sc0000147.1_g000085 Rmu_sc0000193.1_g000024 Rmu_sc0001862.1_g000002 Rmu_sc0002886.1_g000003 Rmu_sc0007698.1_g000016 Rmu_sc0007698.1_g000017
rosa_roxburghii	Rroxscaffold_2G00141610
rosa_rugosa	Rorug02G0096300 Rorug07G0032000
rosa_samantha	Rh2AG142700 Rh2AG142800 Rh2BG147800 Rh2BG147900 Rh2CG149100 Rh2CG149300 Rh2DG148300 Rh2DG148400 Rh4DG139700 Rh5AG160300 Rh6AG040800 Rh6BG035900
rosa_wichuraiana	Rw2G011240 Rw4G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	187
AatII	GACGTC	1 cut(s)	303
AccBSI	CCGCTC	1 cut(s)	291
AccII	CGCG	2 cut(s)	121, 240
AciI	CCGC	6 cut(s)	121, 167, 240, 291, 294, 511
AclWI	GGATC	2 cut(s)	364, 658
AcoI	YGGCCR	1 cut(s)	608
AcsI	RAATTY	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	3 cut(s)	118, 348, 719
AfiI	CCNNNNNNNGG	4 cut(s)	270, 293, 458, 479
AgsI	TTSAA	3 cut(s)	403, 449, 496
AhlI	ACTAGT	1 cut(s)	113
AluBI	AGCT	2 cut(s)	162, 445
AluI	AGCT	2 cut(s)	162, 445
Alw26I	GTCTC	3 cut(s)	102, 291, 379
AlwI	GGATC	2 cut(s)	364, 658
Ama87I	CYCGRG	2 cut(s)	332, 518
AoxI	GGCC	4 cut(s)	103, 310, 460, 608
ApeKI	GCWGC	2 cut(s)	79, 280
ApoI	RAATTY	1 cut(s)	46
AspS9I	GGNCC	3 cut(s)	52, 311, 461
AsuC2I	CCSGG	2 cut(s)	94, 440
AsuHPI	GGTGA	3 cut(s)	136, 295, 417
AvaI	CYCGRG	2 cut(s)	332, 518
AvaII	GGWCC	1 cut(s)	52
BalI	TGGCCA	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	66, 292
BccI	CCATC	4 cut(s)	143, 260, 452, 548
BclI	TGATCA	1 cut(s)	675
BcnI	CCSGG	2 cut(s)	94, 440
BcoDI	GTCTC	3 cut(s)	102, 291, 379
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	6 cut(s)	80, 168, 241, 281, 292, 511
BlpI	GCTNAGC	1 cut(s)	163
BlsI	GCNGC	6 cut(s)	81, 169, 242, 282, 293, 512
BmcAI	AGTACT	1 cut(s)	348
Bme1390I	CCNGG	2 cut(s)	94, 440
Bme18I	GGWCC	1 cut(s)	52
BmeT110I	CYCGRG	2 cut(s)	332, 518
BmgT120I	GGNCC	3 cut(s)	52, 311, 461
BmrFI	CCNGG	2 cut(s)	94, 440
Bpu1102I	GCTNAGC	1 cut(s)	163
BpuMI	CCSGG	2 cut(s)	94, 440
BsaHI	GRCGYC	1 cut(s)	300
BsaI	GGTCTC	2 cut(s)	102, 379
Bsc4I	CCNNNNNNNGG	4 cut(s)	270, 293, 458, 479
Bse1I	ACTGG	4 cut(s)	306, 344, 632, 727
BseGI	GGATG	3 cut(s)	135, 463, 598
BseLI	CCNNNNNNNGG	4 cut(s)	270, 293, 458, 479
BseNI	ACTGG	4 cut(s)	306, 344, 632, 727
BseXI	GCAGC	2 cut(s)	66, 292
Bsh1236I	CGCG	2 cut(s)	121, 240
Bsh1285I	CGRYCG	1 cut(s)	287
BshFI	GGCC	4 cut(s)	105, 312, 462, 610
BsiEI	CGRYCG	1 cut(s)	287
BsiHKCI	CYCGRG	2 cut(s)	332, 518
BsiSI	CCGG	2 cut(s)	94, 440
BslFI	GGGAC	2 cut(s)	286, 677
BslI	CCNNNNNNNGG	4 cut(s)	270, 293, 458, 479
BsmAI	GTCTC	3 cut(s)	102, 291, 379
BsmBI	CGTCTC	1 cut(s)	291
BsmFI	GGGAC	2 cut(s)	286, 677
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	4 cut(s)	105, 312, 462, 610
Bso31I	GGTCTC	2 cut(s)	102, 379
BsoBI	CYCGRG	2 cut(s)	332, 518
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	356, 663, 675
Bsp1720I	GCTNAGC	1 cut(s)	163
BspACI	CCGC	6 cut(s)	121, 167, 240, 291, 294, 511
BspANI	GGCC	4 cut(s)	105, 312, 462, 610
BspFNI	CGCG	2 cut(s)	121, 240
BspHI	TCATGA	1 cut(s)	570
BspPI	GGATC	2 cut(s)	364, 658
BspQI	GCTCTTC	1 cut(s)	315
BspTNI	GGTCTC	2 cut(s)	102, 379
BsrBI	CCGCTC	1 cut(s)	291
BsrI	ACTGG	4 cut(s)	306, 344, 632, 727
BssMI	GATC	3 cut(s)	356, 663, 675
BssNI	GRCGYC	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	163
BstF5I	GGATG	3 cut(s)	135, 463, 598
BstFNI	CGCG	2 cut(s)	121, 240
BstKTI	GATC	3 cut(s)	359, 666, 678
BstMAI	GTCTC	3 cut(s)	102, 291, 379
BstMBI	GATC	3 cut(s)	356, 663, 675
BstMCI	CGRYCG	1 cut(s)	287
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 595
BstSCI	CCNGG	2 cut(s)	92, 438
BstUI	CGCG	2 cut(s)	121, 240
BstV1I	GCAGC	2 cut(s)	66, 292
BstX2I	RGATCY	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	663
BsuRI	GGCC	4 cut(s)	105, 312, 462, 610
BtsCI	GGATG	3 cut(s)	135, 463, 598
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	3 cut(s)	313, 467, 720
CciI	TCATGA	1 cut(s)	570
Cfr13I	GGNCC	3 cut(s)	52, 311, 461
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	3 cut(s)	117, 347, 718
CviAII	CATG	2 cut(s)	571, 673
CviQI	GTAC	3 cut(s)	117, 347, 718
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	3 cut(s)	358, 665, 677
DpnII	GATC	3 cut(s)	356, 663, 675
DrdI	GACNNNNNNGTC	1 cut(s)	187
DseDI	GACNNNNNNGTC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	608
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
EciI	GGCGGA	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	2 cut(s)	102, 379
Eco47I	GGWCC	1 cut(s)	52
Eco88I	CYCGRG	2 cut(s)	332, 518
EcoT38I	GRGCYC	1 cut(s)	387
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	2 cut(s)	574, 676
FaiI	YATR	6 cut(s)	369, 381, 572, 622, 674, 690
FaqI	GGGAC	2 cut(s)	286, 677
FatI	CATG	2 cut(s)	570, 672
FauI	CCCGC	1 cut(s)	114
FbaI	TGATCA	1 cut(s)	675
Fnu4HI	GCNGC	6 cut(s)	80, 168, 241, 281, 292, 511
FokI	GGATG	3 cut(s)	122, 470, 605
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	6 cut(s)	80, 168, 241, 281, 292, 511
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	6 cut(s)	80, 168, 241, 281, 292, 511
HaeIII	GGCC	4 cut(s)	105, 312, 462, 610
HapII	CCGG	2 cut(s)	94, 440
HgaI	GACGC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	574, 676
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	5 cut(s)	30, 127, 235, 260, 390
HpaII	CCGG	2 cut(s)	94, 440
HphI	GGTGA	3 cut(s)	136, 295, 417
Hpy166II	GTNNAC	3 cut(s)	210, 436, 720
Hpy188I	TCNGA	4 cut(s)	111, 147, 265, 389
Hpy188III	TCNNGA	8 cut(s)	178, 230, 332, 334, 354, 400, 409, 571
Hpy8I	GTNNAC	3 cut(s)	210, 436, 720
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	3 cut(s)	116, 474, 586
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	300, 396
HpyCH4V	TGCA	1 cut(s)	563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 595
HpyF3I	CTNAG	1 cut(s)	163
HpySE526I	ACGT	2 cut(s)	300, 396
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	574, 676
Ksp22I	TGATCA	1 cut(s)	675
Kzo9I	GATC	3 cut(s)	356, 663, 675
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	2 cut(s)	66, 292
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	2 cut(s)	300, 396
MaeIII	GTNAC	2 cut(s)	178, 301
MalI	GATC	3 cut(s)	358, 665, 677
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	3 cut(s)	356, 663, 675
MboII	GAAGA	3 cut(s)	332, 412, 571
MflI	RGATCY	1 cut(s)	663
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	610
MluCI	AATT	2 cut(s)	46, 225
MluNI	TGGCCA	1 cut(s)	610
MnlI	CCTC	8 cut(s)	3, 18, 196, 263, 416, 524, 656, 708
Mox20I	TGGCCA	1 cut(s)	610
MscI	TGGCCA	1 cut(s)	610
MseI	TTAA	2 cut(s)	14, 525
Msp20I	TGGCCA	1 cut(s)	610
MspI	CCGG	2 cut(s)	94, 440
MspR9I	CCNGG	2 cut(s)	94, 440
Mva1269I	GAATGC	1 cut(s)	339
MvnI	CGCG	2 cut(s)	121, 240
MwoI	GCNNNNNNNGC	2 cut(s)	211, 595
NciI	CCSGG	2 cut(s)	94, 440
NdeII	GATC	3 cut(s)	356, 663, 675
NlaIII	CATG	2 cut(s)	574, 676
NmuCI	GTSAC	2 cut(s)	178, 301
PaeR7I	CTCGAG	1 cut(s)	332
PagI	TCATGA	1 cut(s)	570
PciSI	GCTCTTC	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	2 cut(s)	194, 393
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	5 cut(s)	30, 127, 235, 260, 390
PflFI	GACNNNGTC	1 cut(s)	94
PkrI	GCNGC	6 cut(s)	81, 169, 242, 282, 293, 512
PspPI	GGNCC	3 cut(s)	52, 311, 461
PsuI	RGATCY	1 cut(s)	663
PsyI	GACNNNGTC	1 cut(s)	94
RsaI	GTAC	3 cut(s)	118, 348, 719
RsaNI	GTAC	3 cut(s)	117, 347, 718
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	14, 525
SatI	GCNGC	6 cut(s)	80, 168, 241, 281, 292, 511
Sau3AI	GATC	3 cut(s)	356, 663, 675
Sau96I	GGNCC	3 cut(s)	52, 311, 461
ScaI	AGTACT	1 cut(s)	348
ScrFI	CCNGG	2 cut(s)	94, 440
SduI	GDGCHC	1 cut(s)	387
Sfr274I	CTCGAG	1 cut(s)	332
SinI	GGWCC	1 cut(s)	52
SlaI	CTCGAG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	2 cut(s)	46, 225
SsiI	CCGC	6 cut(s)	121, 167, 240, 291, 294, 511
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	92, 438
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	2 cut(s)	303, 399
TaqI	TCGA	2 cut(s)	216, 333
TaqII	GACCGA	1 cut(s)	301
TasI	AATT	2 cut(s)	46, 225
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	4 cut(s)	170, 243, 294, 513
TfiI	GAWTC	5 cut(s)	30, 127, 235, 260, 390
Tru1I	TTAA	2 cut(s)	14, 525
Tru9I	TTAA	2 cut(s)	14, 525
TscAI	CASTG	3 cut(s)	313, 474, 727
TseFI	GTSAC	2 cut(s)	178, 301
TseI	GCWGC	2 cut(s)	79, 280
Tsp45I	GTSAC	2 cut(s)	178, 301
TspDTI	ATGAA	2 cut(s)	544, 668
TspRI	CASTG	3 cut(s)	313, 474, 727
Tth111I	GACNNNGTC	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XhoI	CTCGAG	1 cut(s)	332
XspI	CTAG	1 cut(s)	114
ZraI	GACGTC	1 cut(s)	301
ZrmI	AGTACT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.