pycom15g22550

Rer1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002176
Physical Location & Seq
Forward (+)
16675650 .. 16676915
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g22550.2

Sequence Viewer

Length: 375 bp
ATGATTTACATTCTGCGTGTGTACTATGTTCAGGGTTTCTATGTTGTCTCCTATGGTCTGGGGATCTACATCTTGAATCTCTTGATCGGTTTCTTCTCCCCGAAAGTTGACCCGGAGCTTGAGTCCTTGGATGGCCCTTCATTGCCAACAAGTGGTTCTGATGAGTTTAAGCCTTTTGTCCGCCGCCTTCCTGAGTTTAAGTTCTGGTATTCCATCACAAAGGCATTTGTTATTGCATTCATCATGACCTTTATTTCTCTGCTGGATGTACCTGTTTTCTGGCCAATACTGCTATGCTACTGGATTGTTCTGTTTGTCCTCACAATGAAACGACAAATCCTACAGATCGATCAAATACAAATATGTCCCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

125

Amino Acids

14.52

Weight (kDa)

6.13

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 152
AciI CCGC 2 cut(s) 181, 184
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 281
AfaI GTAC 2 cut(s) 23, 270
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 76
AjuI GAANNNNNNNTTGG 2 cut(s) 139, 171
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 71
AoxI GGCC 2 cut(s) 133, 281
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 113
BalI TGGCCA 1 cut(s) 283
BccI CCATC 2 cut(s) 125, 221
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 52
BfmI CTRYAG 1 cut(s) 341
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 140
Bse8I GATNNNNATC 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 2 cut(s) 136, 271
BseJI GATNNNNATC 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 305
BshFI GGCC 2 cut(s) 135, 283
BshVI ATCGAT 1 cut(s) 348
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 2 cut(s) 135, 283
Bsp143I GATC 4 cut(s) 63, 84, 345, 349
BspACI CCGC 2 cut(s) 181, 184
BspANI GGCC 2 cut(s) 135, 283
BspCNI CTCAG 1 cut(s) 184
BspDI ATCGAT 1 cut(s) 348
BspHI TCATGA 1 cut(s) 243
BspPI GGATC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 140
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 4 cut(s) 63, 84, 345, 349
BssT1I CCWWGG 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 136, 271
BstKTI GATC 4 cut(s) 66, 87, 348, 352
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 4 cut(s) 63, 84, 345, 349
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 348
BsuRI GGCC 2 cut(s) 135, 283
BsuTUI ATCGAT 1 cut(s) 348
BtsCI GGATG 2 cut(s) 136, 271
CciI TCATGA 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 134
ClaI ATCGAT 1 cut(s) 348
Csp6I GTAC 2 cut(s) 22, 269
CviAII CATG 1 cut(s) 244
CviJI RGCY 4 cut(s) 118, 135, 172, 283
CviKI_1 RGCY 4 cut(s) 118, 135, 172, 283
CviQI GTAC 2 cut(s) 22, 269
DdeI CTNAG 1 cut(s) 192
DpnI GATC 4 cut(s) 65, 86, 347, 351
DpnII GATC 4 cut(s) 63, 84, 345, 349
EaeI YGGCCR 1 cut(s) 281
EciI GGCGGA 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 1 cut(s) 247
FaiI YATR 6 cut(s) 27, 42, 54, 245, 295, 364
FaqI GGGAC 1 cut(s) 351
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 2 cut(s) 143, 278
Fsp4HI GCNGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 184
HaeIII GGCC 2 cut(s) 135, 283
HapII CCGG 1 cut(s) 113
Hin1II CATG 1 cut(s) 247
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 2 cut(s) 76, 122
HpaII CCGG 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 22, 109
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 4 cut(s) 73, 82, 191, 244
Hpy8I GTNNAC 2 cut(s) 22, 109
HpyAV CCTTC 2 cut(s) 147, 197
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 4 cut(s) 63, 84, 345, 349
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 9 cut(s) 17, 44, 126, 190, 204, 248, 265, 285, 286
MalI GATC 4 cut(s) 65, 86, 347, 351
MboI GATC 4 cut(s) 63, 84, 345, 349
MboII GAAGA 1 cut(s) 85
MflI RGATCY 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 283
MluNI TGGCCA 1 cut(s) 283
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 1 cut(s) 329
Mox20I TGGCCA 1 cut(s) 283
MscI TGGCCA 1 cut(s) 283
MseI TTAA 2 cut(s) 168, 198
Msp20I TGGCCA 1 cut(s) 283
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 113
NdeII GATC 4 cut(s) 63, 84, 345, 349
NlaIII CATG 1 cut(s) 247
PagI TCATGA 1 cut(s) 243
PctI GAATGC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 76
PflMI CCANNNNNTGG 1 cut(s) 152
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 2 cut(s) 23, 270
RsaNI GTAC 2 cut(s) 22, 269
SaqAI TTAA 2 cut(s) 168, 198
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 4 cut(s) 63, 84, 345, 349
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 113
SetI ASST 3 cut(s) 120, 251, 274
SfcI CTRYAG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SsiI CCGC 2 cut(s) 181, 184
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 126
TaqI TCGA 1 cut(s) 348
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 2 cut(s) 168, 198
Tru9I TTAA 2 cut(s) 168, 198
TspDTI ATGAA 3 cut(s) 129, 229, 341
Van91I CCANNNNNTGG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.