Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7998428.1

Orthogroup ID

OG0002176

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 503

Gene Structure 503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7998428.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 350 bp

atggagggactcggaggcgacggagcggcggtgacgtcaccagtggcccaatggaagagcgatttctcgagagcattccagtactatctggatcggtccacgcctcacacgctttataggtggataggaaccctagttgtggcgatgatctacattctgcgagtctactatgtccagggcttctacgtggtctcgtatgggctcggaatctacgtcttgaacctcttgattggcttcttctcacccaaggttgacccggagcttgaacctttggatgggccttcattgccgaccaaaggtgccgatgagttcaagcctttcgttcgccgcctccccgagtttaagttctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

116

Amino Acids

13.17

Weight (kDa)

6.55

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18240 AT2G18240
fragaria_vesca	FvH4_1g12980 FvH4_1g12980
malus_domestica	MD02G1144300.v1.1 MD12G1092000.v1.1 MD15G1257900.v1.1 MD15G1258000.v1.1
prunus_persica	Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1
pyrus_communis	pycom02g11420 pycom15g22550 pycom15g22560
rosa_chinensis	RchiOBHm_Chr2g0101041 RchiOBHm_Chr2g0101051 RchiOBHm_Chr6g0247461 RchiOBHm_Chr6g0301161
rosa_laevigata	RLG00000017047
rosa_multiflora	Rmu_co7998428.1_g000001 Rmu_sc0000147.1_g000085 Rmu_sc0000193.1_g000024 Rmu_sc0001862.1_g000002 Rmu_sc0002886.1_g000003 Rmu_sc0007698.1_g000016 Rmu_sc0007698.1_g000017
rosa_roxburghii	Rroxscaffold_2G00141610
rosa_rugosa	Rorug02G0096300 Rorug07G0032000
rosa_samantha	Rh2AG142700 Rh2AG142800 Rh2BG147800 Rh2BG147900 Rh2CG149100 Rh2CG149300 Rh2DG148300 Rh2DG148400 Rh4DG139700 Rh5AG160300 Rh6AG040800 Rh6BG035900
rosa_wichuraiana	Rw2G011240 Rw4G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	299
AccBSI	CCGCTC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	3 cut(s)	26, 29, 328
AclWI	GGATC	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	3 cut(s)	139, 275, 296
AgsI	TTSAA	3 cut(s)	220, 266, 313
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	99
Ama87I	CYCGRG	2 cut(s)	67, 335
AoxI	GGCC	2 cut(s)	45, 278
AspS9I	GGNCC	3 cut(s)	46, 96, 278
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	3 cut(s)	30, 43, 234
AvaI	CYCGRG	2 cut(s)	67, 335
AvaII	GGWCC	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	204
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	134
BisI	GCNGC	2 cut(s)	27, 328
BlsI	GCNGC	2 cut(s)	28, 329
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	2 cut(s)	176, 257
Bme18I	GGWCC	1 cut(s)	96
BmeT110I	CYCGRG	2 cut(s)	67, 335
BmgT120I	GGNCC	3 cut(s)	46, 96, 278
BmiI	GGNNCC	2 cut(s)	130, 301
BmrFI	CCNGG	2 cut(s)	176, 257
BpuMI	CCSGG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	175, 246
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 275, 296
Bse1I	ACTGG	2 cut(s)	41, 79
Bse3DI	GCAATG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	175, 246
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	3 cut(s)	139, 275, 296
BseMI	GCAATG	1 cut(s)	284
BseNI	ACTGG	2 cut(s)	41, 79
BshFI	GGCC	2 cut(s)	47, 280
BshNI	GGYRCC	1 cut(s)	299
BsiHKCI	CYCGRG	2 cut(s)	67, 335
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	139, 275, 296
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	47, 280
Bso31I	GGTCTC	1 cut(s)	196
BsoBI	CYCGRG	2 cut(s)	67, 335
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	91, 147
BspACI	CCGC	3 cut(s)	26, 29, 328
BspANI	GGCC	2 cut(s)	47, 280
BspLI	GGNNCC	2 cut(s)	130, 301
BspPI	GGATC	1 cut(s)	99
BspQI	GCTCTTC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	196
BsrBI	CCGCTC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	41, 79
BssECI	CCNNGG	2 cut(s)	175, 246
BssMI	GATC	2 cut(s)	91, 147
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	94, 150
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	91, 147
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 286
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	174, 255
BsuRI	GGCC	2 cut(s)	47, 280
BtgZI	GCGATG	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	48
Cfr13I	GGNCC	3 cut(s)	46, 96, 278
Csp6I	GTAC	1 cut(s)	82
CviJI	RGCY	7 cut(s)	47, 180, 202, 234, 262, 280, 316
CviKI_1	RGCY	7 cut(s)	47, 180, 202, 234, 262, 280, 316
CviQI	GTAC	1 cut(s)	82
DpnI	GATC	2 cut(s)	93, 149
DpnII	GATC	2 cut(s)	91, 147
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	96
Eco88I	CYCGRG	2 cut(s)	67, 335
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	246
FaiI	YATR	3 cut(s)	117, 171, 198
FaqI	GGGAC	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	27, 328
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	27, 328
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	2 cut(s)	27, 328
HaeIII	GGCC	2 cut(s)	47, 280
HapII	CCGG	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	3 cut(s)	9, 162, 207
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	3 cut(s)	30, 43, 234
Hpy166II	GTNNAC	3 cut(s)	99, 166, 253
Hpy188I	TCNGA	2 cut(s)	14, 206
Hpy188III	TCNNGA	5 cut(s)	67, 69, 89, 217, 226
Hpy8I	GTNNAC	3 cut(s)	99, 166, 253
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	291
HpyCH4IV	ACGT	3 cut(s)	35, 186, 213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 286
HpySE526I	ACGT	3 cut(s)	35, 186, 213
Hsp92I	GRCGYC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	91, 147
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	2 cut(s)	23, 259
LpnPI	CCDG	6 cut(s)	54, 74, 92, 161, 188, 270
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	3 cut(s)	35, 186, 213
MaeIII	GTNAC	2 cut(s)	31, 36
MalI	GATC	2 cut(s)	93, 149
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	2 cut(s)	91, 147
MboII	GAAGA	2 cut(s)	67, 229
MhlI	GDGCHC	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	3, 171
MnlI	CCTC	4 cut(s)	8, 114, 233, 341
MseI	TTAA	1 cut(s)	342
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	176, 257
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	109, 286
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	2 cut(s)	91, 147
NlaIV	GGNNCC	2 cut(s)	130, 301
NmuCI	GTSAC	2 cut(s)	31, 36
PaeR7I	CTCGAG	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	28, 329
PleI	GAGTC	2 cut(s)	3, 170
PpsI	GAGTC	2 cut(s)	3, 170
Ppu21I	YACGTR	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	130, 301
PspPI	GGNCC	3 cut(s)	46, 96, 278
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	2 cut(s)	27, 328
Sau3AI	GATC	2 cut(s)	91, 147
Sau96I	GGNCC	3 cut(s)	46, 96, 278
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	2 cut(s)	3, 171
ScrFI	CCNGG	2 cut(s)	176, 257
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	9 cut(s)	38, 122, 189, 216, 225, 252, 264, 271, 301
Sfr274I	CTCGAG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SsiI	CCGC	3 cut(s)	26, 29, 328
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	174, 255
StyI	CCWWGG	1 cut(s)	246
TaiI	ACGT	3 cut(s)	38, 189, 216
TaqI	TCGA	1 cut(s)	68
TaqII	GACCGA	1 cut(s)	84
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	2 cut(s)	29, 330
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	2 cut(s)	31, 36
Tsp45I	GTSAC	2 cut(s)	31, 36
TspDTI	ATGAA	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	96
XcmI	CCANNNNNNNNNTGG	1 cut(s)	48
XhoI	CTCGAG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	134
ZraI	GACGTC	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.