Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002176

Physical Location & Seq

Genomic Coordinates Forward (+)

27808787 .. 27811914

Gene Structure 3128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG139700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAGGGACTCAGCAGCGACCGAGCGGCGGAGTTGTCACCAGTGGCCCAGTGGAAGAGCGATTTCTCGAGAGCATTCCAGTACTACCTGGATCGTTCCACGCCTCACACACTTCAGAGGTGGCTTGGAACCCTAGTTGTGGCGATGATCTACATTATGCGAGTCTACTATGTCCAGGGCTTCTATGTGGTCTCGTATGGGCTCGGAATCTACTTCTTGAACCTCTTGATTGGCTTCTTCTCACCCAAGGTTGACCCGGAGCTTGAACCTTTGGATGGCCCTTCACTGCCTACCAAAGGTGCTGATGAGTTCAAGCCTTTCGTTCGCCGCCTCCCCGAGTTTAAGTTCTGGTATTCAATCACAAAGGCTTTTGTTATTGCATTTATCATGACCTTCATCTCTGTACTGGATGTGCCTGTTTTCTGGCCGATATTGTTATGCTACTGGATTGTGCTATTTGTCCTCACAATGAAACGACAGATCCTACACATGATCAAATACAAATATGTCCCATTTGATATTGGAAAGCAGGTGGATGCTGCTCCTTTTAGGCAATGGTATCTACAGCACTACAATGTTCATATCGGGAGGAAGAAAAAGACAGCTGCAAAAAAAGGATGCCAAGGATGCTGCTACGAAGGAGGCAGATGGCACCACAGAAGAAACCAAAAAGGCAGCAATCTCCTGAGGAAGCTTGAGAAGCGCCAGAAAGATCGTACTCTTGATTCCCACATCGAAGAGCAGTTTAGGGGTGGTAGGTTGTTGGCTTGCATTTCTTCCCGCCCAGGCCAATGTGGAAGGTCTGATGGGTACATTTTGGAGGGGAAAGAATTAGAGTTTTACATGAAGAAACTCCATAGGAAGAAGGGAAAGGCAGCTGGTGCTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

297

Amino Acids

34.55

Weight (kDa)

9.74

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	18 - 177	4.6e-74	Rer1 family
Ribosomal_S8e	PF01201	243 - 273	3.2e-07	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18240 AT2G18240
fragaria_vesca	FvH4_1g12980 FvH4_1g12980
malus_domestica	MD02G1144300.v1.1 MD12G1092000.v1.1 MD15G1257900.v1.1 MD15G1258000.v1.1
prunus_persica	Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1
pyrus_communis	pycom02g11420 pycom15g22550 pycom15g22560
rosa_chinensis	RchiOBHm_Chr2g0101041 RchiOBHm_Chr2g0101051 RchiOBHm_Chr6g0247461 RchiOBHm_Chr6g0301161
rosa_laevigata	RLG00000017047
rosa_multiflora	Rmu_co7998428.1_g000001 Rmu_sc0000147.1_g000085 Rmu_sc0000193.1_g000024 Rmu_sc0001862.1_g000002 Rmu_sc0002886.1_g000003 Rmu_sc0007698.1_g000016 Rmu_sc0007698.1_g000017
rosa_roxburghii	Rroxscaffold_2G00141610
rosa_rugosa	Rorug02G0096300 Rorug07G0032000
rosa_samantha	Rh2AG142700 Rh2AG142800 Rh2BG147800 Rh2BG147900 Rh2CG149100 Rh2CG149300 Rh2DG148300 Rh2DG148400 Rh4DG139700 Rh5AG160300 Rh6AG040800 Rh6BG035900
rosa_wichuraiana	Rw2G011240 Rw4G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	520
Acc36I	ACCTGC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	651
AccBSI	CCGCTC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	4 cut(s)	26, 29, 328, 781
AclWI	GGATC	2 cut(s)	99, 475
AcoI	YGGCCR	1 cut(s)	425
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	4 cut(s)	83, 405, 718, 812
AfiI	CCNNNNNNNGG	4 cut(s)	28, 139, 275, 296
AgsI	TTSAA	4 cut(s)	220, 266, 313, 357
AjnI	CCWGG	3 cut(s)	87, 174, 784
AluBI	AGCT	4 cut(s)	262, 605, 694, 878
AluI	AGCT	4 cut(s)	262, 605, 694, 878
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	2 cut(s)	99, 475
Ama87I	CYCGRG	2 cut(s)	67, 335
AoxI	GGCC	4 cut(s)	45, 277, 425, 787
ApeKI	GCWGC	8 cut(s)	15, 539, 605, 630, 675, 875, 884, 887
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	2 cut(s)	46, 278
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	30, 234
AvaI	CYCGRG	2 cut(s)	67, 335
AxyI	CCTNAGG	1 cut(s)	686
BanI	GGYRCC	1 cut(s)	651
BanII	GRGCYC	1 cut(s)	204
BbvI	GCAGC	8 cut(s)	27, 526, 592, 617, 687, 871, 874, 887
BccI	CCATC	3 cut(s)	269, 642, 800
BciT130I	CCWGG	3 cut(s)	89, 176, 786
BclI	TGATCA	1 cut(s)	492
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	563
BfoI	RGCGCY	1 cut(s)	706
BfuAI	ACCTGC	1 cut(s)	520
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	4 cut(s)	89, 176, 257, 786
BmeT110I	CYCGRG	2 cut(s)	67, 335
BmgT120I	GGNCC	2 cut(s)	46, 278
BmiI	GGNNCC	2 cut(s)	130, 653
BmrFI	CCNGG	4 cut(s)	89, 176, 257, 786
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	3 cut(s)	526, 608, 617
BmuI	ACTGGG	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	4 cut(s)	175, 246, 622, 784
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 139, 275, 296
Bse1I	ACTGG	5 cut(s)	41, 49, 79, 411, 449
Bse21I	CCTNAGG	1 cut(s)	686
Bse3DI	GCAATG	1 cut(s)	560
BseBI	CCWGG	3 cut(s)	89, 176, 786
BseDI	CCNNGG	4 cut(s)	175, 246, 622, 784
BseGI	GGATG	5 cut(s)	280, 415, 541, 623, 632
BseLI	CCNNNNNNNGG	4 cut(s)	28, 139, 275, 296
BseMI	GCAATG	1 cut(s)	560
BseMII	CTCAG	2 cut(s)	25, 677
BseNI	ACTGG	5 cut(s)	41, 49, 79, 411, 449
BseXI	GCAGC	8 cut(s)	27, 526, 592, 617, 687, 871, 874, 887
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	4 cut(s)	47, 279, 427, 789
BshNI	GGYRCC	1 cut(s)	651
BsiEI	CGRYCG	1 cut(s)	22
BsiHKCI	CYCGRG	2 cut(s)	67, 335
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	2 cut(s)	21, 494
BslI	CCNNNNNNNGG	4 cut(s)	28, 139, 275, 296
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	21, 494
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	4 cut(s)	47, 279, 427, 789
Bso31I	GGTCTC	1 cut(s)	196
BsoBI	CYCGRG	2 cut(s)	67, 335
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	5 cut(s)	91, 147, 480, 492, 712
BspACI	CCGC	4 cut(s)	26, 29, 328, 781
BspANI	GGCC	4 cut(s)	47, 279, 427, 789
BspCNI	CTCAG	2 cut(s)	24, 678
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	130, 653
BspMI	ACCTGC	1 cut(s)	520
BspPI	GGATC	2 cut(s)	99, 475
BspQI	GCTCTTC	2 cut(s)	50, 732
BspT107I	GGYRCC	1 cut(s)	651
BspTNI	GGTCTC	1 cut(s)	196
BsrBI	CCGCTC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	560
BsrI	ACTGG	5 cut(s)	41, 49, 79, 411, 449
BssECI	CCNNGG	4 cut(s)	175, 246, 622, 784
BssMI	GATC	5 cut(s)	91, 147, 480, 492, 712
BssT1I	CCWWGG	2 cut(s)	246, 622
Bst2UI	CCWGG	3 cut(s)	89, 176, 786
Bst6I	CTCTTC	2 cut(s)	50, 732
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstC8I	GCNNGC	1 cut(s)	769
BstDEI	CTNAG	2 cut(s)	11, 686
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstF5I	GGATG	5 cut(s)	280, 415, 541, 623, 632
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	5 cut(s)	94, 150, 483, 495, 715
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	5 cut(s)	91, 147, 480, 492, 712
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	4 cut(s)	627, 700, 881, 884
BstNI	CCWGG	3 cut(s)	89, 176, 786
BstSCI	CCNGG	4 cut(s)	87, 174, 255, 784
BstSFI	CTRYAG	1 cut(s)	563
BstV1I	GCAGC	8 cut(s)	27, 526, 592, 617, 687, 871, 874, 887
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
Bsu36I	CCTNAGG	1 cut(s)	686
BsuRI	GGCC	4 cut(s)	47, 279, 427, 789
BtgZI	GCGATG	1 cut(s)	158
BtsCI	GGATG	5 cut(s)	280, 415, 541, 623, 632
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	3 cut(s)	48, 56, 284
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	1 cut(s)	769
CciI	TCATGA	1 cut(s)	387
CfoI	GCGC	1 cut(s)	705
Cfr13I	GGNCC	2 cut(s)	46, 278
Csp6I	GTAC	4 cut(s)	82, 404, 717, 811
CviAII	CATG	3 cut(s)	388, 490, 844
CviQI	GTAC	4 cut(s)	82, 404, 717, 811
DdeI	CTNAG	2 cut(s)	11, 686
DpnI	GATC	5 cut(s)	93, 149, 482, 494, 714
DpnII	GATC	5 cut(s)	91, 147, 480, 492, 712
EaeI	YGGCCR	1 cut(s)	425
Eam1104I	CTCTTC	2 cut(s)	50, 732
EarI	CTCTTC	2 cut(s)	50, 732
EciI	GGCGGA	1 cut(s)	44
Eco130I	CCWWGG	2 cut(s)	246, 622
Eco24I	GRGCYC	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	98
Eco81I	CCTNAGG	1 cut(s)	686
Eco88I	CYCGRG	2 cut(s)	67, 335
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoRII	CCWGG	3 cut(s)	87, 174, 784
EcoT14I	CCWWGG	2 cut(s)	246, 622
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	2 cut(s)	246, 622
FaeI	CATG	3 cut(s)	391, 493, 847
FaqI	GGGAC	2 cut(s)	21, 494
FatI	CATG	3 cut(s)	387, 489, 843
FauI	CCCGC	1 cut(s)	788
FbaI	TGATCA	1 cut(s)	492
FblI	GTMKAC	1 cut(s)	165
FokI	GGATG	5 cut(s)	287, 422, 548, 630, 639
FriOI	GRGCYC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	1 cut(s)	704
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	4 cut(s)	47, 279, 427, 789
HapII	CCGG	1 cut(s)	257
HhaI	GCGC	1 cut(s)	705
Hin1II	CATG	3 cut(s)	391, 493, 847
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	4 cut(s)	9, 162, 207, 725
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	2 cut(s)	30, 234
Hpy166II	GTNNAC	2 cut(s)	166, 253
Hpy188I	TCNGA	3 cut(s)	117, 206, 805
Hpy188III	TCNNGA	8 cut(s)	67, 69, 217, 226, 388, 586, 685, 722
Hpy8I	GTNNAC	2 cut(s)	166, 253
HpyAV	CCTTC	5 cut(s)	291, 403, 632, 792, 859
HpyCH4V	TGCA	4 cut(s)	380, 608, 771, 890
HpyF10VI	GCNNNNNNNGC	4 cut(s)	627, 700, 881, 884
HpyF3I	CTNAG	2 cut(s)	11, 686
Hsp92II	CATG	3 cut(s)	391, 493, 847
HspAI	GCGC	1 cut(s)	703
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	5 cut(s)	91, 147, 480, 492, 712
LguI	GCTCTTC	2 cut(s)	50, 732
LmnI	GCTCC	2 cut(s)	259, 547
Lsp1109I	GCAGC	8 cut(s)	27, 526, 592, 617, 687, 871, 874, 887
LweI	GCATC	3 cut(s)	526, 608, 617
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	5 cut(s)	93, 149, 482, 494, 714
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	5 cut(s)	91, 147, 480, 492, 712
MboII	GAAGA	8 cut(s)	67, 229, 604, 672, 749, 768, 859, 874
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	830
MlyI	GAGTC	2 cut(s)	3, 171
MnlI	CCTC	9 cut(s)	111, 114, 233, 341, 473, 582, 635, 681, 814
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	2 cut(s)	605, 878
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	4 cut(s)	89, 176, 257, 786
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	3 cut(s)	89, 176, 786
MwoI	GCNNNNNNNGC	4 cut(s)	627, 700, 881, 884
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	5 cut(s)	91, 147, 480, 492, 712
NlaIII	CATG	3 cut(s)	391, 493, 847
NlaIV	GGNNCC	2 cut(s)	130, 653
NmuCI	GTSAC	1 cut(s)	36
PaeR7I	CTCGAG	1 cut(s)	67
PagI	TCATGA	1 cut(s)	387
PaqCI	CACCTGC	1 cut(s)	520
PciSI	GCTCTTC	2 cut(s)	50, 732
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	207, 725
PleI	GAGTC	2 cut(s)	3, 170
PpsI	GAGTC	2 cut(s)	3, 170
Psp6I	CCWGG	3 cut(s)	87, 174, 784
PspGI	CCWGG	3 cut(s)	87, 174, 784
PspN4I	GGNNCC	2 cut(s)	130, 653
PspPI	GGNCC	2 cut(s)	46, 278
PsuI	RGATCY	1 cut(s)	480
PvuII	CAGCTG	2 cut(s)	605, 878
RsaI	GTAC	4 cut(s)	83, 405, 718, 812
RsaNI	GTAC	4 cut(s)	82, 404, 717, 811
RseI	CAYNNNNRTG	1 cut(s)	573
SapI	GCTCTTC	2 cut(s)	50, 732
SaqAI	TTAA	1 cut(s)	342
Sau3AI	GATC	5 cut(s)	91, 147, 480, 492, 712
Sau96I	GGNCC	2 cut(s)	46, 278
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	2 cut(s)	3, 171
ScrFI	CCNGG	4 cut(s)	89, 176, 257, 786
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	3 cut(s)	526, 608, 617
SfcI	CTRYAG	1 cut(s)	563
Sfr274I	CTCGAG	1 cut(s)	67
SlaI	CTCGAG	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	2 cut(s)	67, 695
SmoI	CTYRAG	2 cut(s)	67, 695
Sse9I	AATT	1 cut(s)	830
SsiI	CCGC	4 cut(s)	26, 29, 328, 781
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	4 cut(s)	87, 174, 255, 784
StyI	CCWWGG	2 cut(s)	246, 622
TaqI	TCGA	2 cut(s)	68, 735
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	830
TatI	WGTACW	2 cut(s)	81, 403
TauI	GCSGC	2 cut(s)	29, 330
TfiI	GAWTC	2 cut(s)	207, 725
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	3 cut(s)	48, 56, 291
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	8 cut(s)	15, 539, 605, 630, 675, 875, 884, 887
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	4 cut(s)	385, 485, 569, 860
TspRI	CASTG	3 cut(s)	48, 56, 291
XagI	CCTNNNNNAGG	1 cut(s)	294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	48
XhoI	CTCGAG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	134
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.