Rmu_sc0000193.1_g000024

Rer1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000193.1
OG0002176
Physical Location & Seq
Forward (+)
111636 .. 111938
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000193.1_g000024.1.cds

Sequence Viewer

Length: 303 bp
atggaccgggaaattgaagccttggatggggctttattgcctaccaaaggttctgatgagtttaggcctttcgttcgccgcctttcggagttcaagttctggtattccatcacaaaggctttcattattgcatttatcatgacctttatctttgtgttggatgtgcctgttttctggccaatattgaaatgctattggattatgctatttgtcctcacaatgaaacgacagatcctacacatgatcaaatacagatatgtcccatttgatattcgaaagcggagatgcactggaaagaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

100

Amino Acids

12.19

Weight (kDa)

9.95

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 79, 280
AclWI GGATC 1 cut(s) 226
AcoI YGGCCR 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 27, 47, 85
AgsI TTSAA 3 cut(s) 17, 94, 187
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AlwI GGATC 1 cut(s) 226
AoxI GGCC 2 cut(s) 65, 176
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 8
AsuII TTCGAA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 178
BccI CCATC 2 cut(s) 20, 116
BclI TGATCA 1 cut(s) 243
BcnI CCSGG 1 cut(s) 8
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 1 cut(s) 275
Bpu14I TTCGAA 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 47, 85
Bse1I ACTGG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 2 cut(s) 31, 166
BseLI CCNNNNNNNGG 3 cut(s) 27, 47, 85
BseNI ACTGG 1 cut(s) 295
BshFI GGCC 2 cut(s) 67, 178
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 3 cut(s) 27, 47, 85
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 2 cut(s) 67, 178
Bsp119I TTCGAA 1 cut(s) 274
Bsp143I GATC 2 cut(s) 231, 243
BspACI CCGC 2 cut(s) 79, 280
BspANI GGCC 2 cut(s) 67, 178
BspHI TCATGA 1 cut(s) 138
BspPI GGATC 1 cut(s) 226
BspT104I TTCGAA 1 cut(s) 274
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 231, 243
BssT1I CCWWGG 1 cut(s) 21
BstBI TTCGAA 1 cut(s) 274
BstENI CCTNNNNNAGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 31, 166
BstKTI GATC 2 cut(s) 234, 246
BstMBI GATC 2 cut(s) 231, 243
BstSCI CCNGG 1 cut(s) 6
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 2 cut(s) 67, 178
BtsCI GGATG 2 cut(s) 31, 166
BtsIMutI CAGTG 1 cut(s) 288
CciI TCATGA 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 2 cut(s) 139, 241
CviJI RGCY 5 cut(s) 20, 32, 67, 119, 178
CviKI_1 RGCY 5 cut(s) 20, 32, 67, 119, 178
DpnI GATC 2 cut(s) 233, 245
DpnII GATC 2 cut(s) 231, 243
EaeI YGGCCR 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 21
Eco147I AGGCCT 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 4
EcoNI CCTNNNNNAGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 2 cut(s) 142, 244
FaiI YATR 4 cut(s) 140, 203, 242, 258
FaqI GGGAC 1 cut(s) 245
FatI CATG 2 cut(s) 138, 240
FbaI TGATCA 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 2 cut(s) 38, 173
Fsp4HI GCNGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 79
HaeIII GGCC 2 cut(s) 67, 178
HapII CCGG 1 cut(s) 7
Hin1II CATG 2 cut(s) 142, 244
HpaII CCGG 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 55, 88
Hpy188III TCNNGA 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 131, 288
Hsp92II CATG 2 cut(s) 142, 244
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 2 cut(s) 231, 243
LpnPI CCDG 5 cut(s) 20, 85, 160, 180, 276
LweI GCATC 1 cut(s) 275
MalI GATC 2 cut(s) 233, 245
MboI GATC 2 cut(s) 231, 243
MflI RGATCY 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 1 cut(s) 12
MluNI TGGCCA 1 cut(s) 178
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 1 cut(s) 224
Mox20I TGGCCA 1 cut(s) 178
MscI TGGCCA 1 cut(s) 178
Msp20I TGGCCA 1 cut(s) 178
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 8
NciI CCSGG 1 cut(s) 8
NdeII GATC 2 cut(s) 231, 243
NlaIII CATG 2 cut(s) 142, 244
NspV TTCGAA 1 cut(s) 274
PagI TCATGA 1 cut(s) 138
PceI AGGCCT 1 cut(s) 67
PkrI GCNGC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 231
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 2 cut(s) 231, 243
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 8
SetI ASST 2 cut(s) 52, 146
SfaNI GCATC 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 274
SgeI CNNG 9 cut(s) 19, 20, 34, 106, 112, 151, 179, 187, 253
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 2 cut(s) 79, 280
SspI AATATT 1 cut(s) 183
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 1 cut(s) 21
TaqI TCGA 1 cut(s) 274
TasI AATT 1 cut(s) 12
TauI GCSGC 1 cut(s) 81
TscAI CASTG 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 112, 236
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.