Rh2DG148400

Rer1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002176
Physical Location & Seq
Forward (+)
12440770 .. 12442471
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG148400.1

Sequence Viewer

Length: 552 bp
ATGGAGGGACTGGGAGGCGACGGAGCGGCGGTGACGTCACCAGTGGCCCAATGGAAGAGCGATTTCTCGAGAGCATTCCAGTACTATCTGGATCGGTCCACGCCTCACACGCTTTATAGGTGGATAGGAACCCTAGTTGTGGCGATGATCTACATTCTGCGAGTCTACTATGTCCAGGGCTTCTATGTGGTCTCGTATGGGCTCGGAATCTACGTCTTGAACCTCTTGATTGGCTTCTTCTCACCCAAGGTTGACCCGGAGCTTGAACCTTTGGATGGGCCTTCATTGCCGACCAAAGGTGCCGATGAGTTCAAGCCTTTCGTTCGCCGCCTCCCCGAGTTTAAGTTCTGGTATTCCATCACAAAGGCTTTCATTATTGCATTTATCATGACCTTCTTCTCTGTGCTGGATGTGCCTGTTTTCTGGCCAATATTGTTATGCTACTGGATTGTGCTTTTTGTCCTAACAATGAAACGACAGATCCTACACATGATCAAATACAAATATGTCCCATTTGATATTGGAAAGCAGAGGTACACCGGAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

183

Amino Acids

21.32

Weight (kDa)

9.4

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 18 - 180 2.5e-76 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 299
AccBSI CCGCTC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 165
AciI CCGC 3 cut(s) 26, 29, 328
AclWI GGATC 2 cut(s) 99, 475
AcoI YGGCCR 1 cut(s) 425
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 2 cut(s) 83, 536
AfiI CCNNNNNNNGG 3 cut(s) 139, 275, 296
AgsI TTSAA 3 cut(s) 220, 266, 313
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 2 cut(s) 99, 475
Ama87I CYCGRG 2 cut(s) 67, 335
AoxI GGCC 3 cut(s) 45, 278, 425
AspS9I GGNCC 3 cut(s) 46, 96, 278
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 3 cut(s) 30, 43, 234
AvaI CYCGRG 2 cut(s) 67, 335
AvaII GGWCC 1 cut(s) 96
BalI TGGCCA 1 cut(s) 427
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 204
BccI CCATC 2 cut(s) 269, 365
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 1 cut(s) 492
BcnI CCSGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 134
BisI GCNGC 2 cut(s) 27, 328
BlsI GCNGC 2 cut(s) 28, 329
BmcAI AGTACT 1 cut(s) 83
Bme1390I CCNGG 2 cut(s) 176, 257
Bme18I GGWCC 1 cut(s) 96
BmeT110I CYCGRG 2 cut(s) 67, 335
BmgT120I GGNCC 3 cut(s) 46, 96, 278
BmiI GGNNCC 2 cut(s) 130, 301
BmrFI CCNGG 2 cut(s) 176, 257
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 175, 246
BsaWI WCCGGW 1 cut(s) 539
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 275, 296
Bse1I ACTGG 4 cut(s) 15, 41, 79, 449
Bse3DI GCAATG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 175, 246
BseGI GGATG 2 cut(s) 280, 415
BseLI CCNNNNNNNGG 3 cut(s) 139, 275, 296
BseMI GCAATG 1 cut(s) 284
BseNI ACTGG 4 cut(s) 15, 41, 79, 449
BshFI GGCC 3 cut(s) 47, 280, 427
BshNI GGYRCC 1 cut(s) 299
BsiHKCI CYCGRG 2 cut(s) 67, 335
BsiSI CCGG 2 cut(s) 257, 540
BslFI GGGAC 2 cut(s) 21, 494
BslI CCNNNNNNNGG 3 cut(s) 139, 275, 296
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 2 cut(s) 21, 494
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 3 cut(s) 47, 280, 427
Bso31I GGTCTC 1 cut(s) 196
BsoBI CYCGRG 2 cut(s) 67, 335
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 4 cut(s) 91, 147, 480, 492
BspACI CCGC 3 cut(s) 26, 29, 328
BspANI GGCC 3 cut(s) 47, 280, 427
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 130, 301
BspPI GGATC 2 cut(s) 99, 475
BspQI GCTCTTC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 196
BsrBI CCGCTC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 284
BsrI ACTGG 4 cut(s) 15, 41, 79, 449
BssECI CCNNGG 2 cut(s) 175, 246
BssMI GATC 4 cut(s) 91, 147, 480, 492
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 35
BstF5I GGATG 2 cut(s) 280, 415
BstKTI GATC 4 cut(s) 94, 150, 483, 495
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 4 cut(s) 91, 147, 480, 492
BstMWI GCNNNNNNNGC 3 cut(s) 109, 286, 412
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 2 cut(s) 174, 255
BstX2I RGATCY 1 cut(s) 480
BstYI RGATCY 1 cut(s) 480
BsuRI GGCC 3 cut(s) 47, 280, 427
BtgZI GCGATG 1 cut(s) 158
BtsCI GGATG 2 cut(s) 280, 415
BtsIMutI CAGTG 1 cut(s) 48
CciI TCATGA 1 cut(s) 387
Cfr13I GGNCC 3 cut(s) 46, 96, 278
Csp6I GTAC 2 cut(s) 82, 535
CviAII CATG 2 cut(s) 388, 490
CviJI RGCY 9 cut(s) 47, 180, 202, 234, 262, 280, 316, 368, 427
CviKI_1 RGCY 9 cut(s) 47, 180, 202, 234, 262, 280, 316, 368, 427
CviQI GTAC 2 cut(s) 82, 535
DpnI GATC 4 cut(s) 93, 149, 482, 494
DpnII GATC 4 cut(s) 91, 147, 480, 492
EaeI YGGCCR 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 96
Eco88I CYCGRG 2 cut(s) 67, 335
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 2 cut(s) 391, 493
FaiI YATR 8 cut(s) 117, 171, 186, 198, 389, 439, 491, 507
FaqI GGGAC 2 cut(s) 21, 494
FatI CATG 2 cut(s) 387, 489
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 2 cut(s) 27, 328
FokI GGATG 2 cut(s) 287, 422
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 27, 328
FspBI CTAG 1 cut(s) 134
GluI GCNGC 2 cut(s) 27, 328
HaeIII GGCC 3 cut(s) 47, 280, 427
HapII CCGG 2 cut(s) 257, 540
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 2 cut(s) 391, 493
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 2 cut(s) 162, 207
HpaII CCGG 2 cut(s) 257, 540
HphI GGTGA 3 cut(s) 30, 43, 234
Hpy166II GTNNAC 4 cut(s) 99, 166, 253, 537
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 6 cut(s) 67, 69, 89, 217, 226, 388
Hpy8I GTNNAC 4 cut(s) 99, 166, 253, 537
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 291, 403
HpyCH4IV ACGT 2 cut(s) 35, 213
HpyCH4V TGCA 1 cut(s) 380
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 286, 412
HpySE526I ACGT 2 cut(s) 35, 213
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 391, 493
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 4 cut(s) 91, 147, 480, 492
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 2 cut(s) 23, 259
MaeI CTAG 1 cut(s) 134
MaeII ACGT 2 cut(s) 35, 213
MaeIII GTNAC 2 cut(s) 31, 36
MalI GATC 4 cut(s) 93, 149, 482, 494
MbiI CCGCTC 1 cut(s) 26
MboI GATC 4 cut(s) 91, 147, 480, 492
MboII GAAGA 3 cut(s) 67, 229, 388
MflI RGATCY 1 cut(s) 480
MhlI GDGCHC 1 cut(s) 204
MlsI TGGCCA 1 cut(s) 427
MluNI TGGCCA 1 cut(s) 427
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 5 cut(s) 8, 114, 233, 341, 525
Mox20I TGGCCA 1 cut(s) 427
MscI TGGCCA 1 cut(s) 427
MseI TTAA 1 cut(s) 342
Msp20I TGGCCA 1 cut(s) 427
MspI CCGG 2 cut(s) 257, 540
MspR9I CCNGG 2 cut(s) 176, 257
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 3 cut(s) 109, 286, 412
NciI CCSGG 1 cut(s) 257
NdeII GATC 4 cut(s) 91, 147, 480, 492
NlaIII CATG 2 cut(s) 391, 493
NlaIV GGNNCC 2 cut(s) 130, 301
NmuCI GTSAC 2 cut(s) 31, 36
PaeR7I CTCGAG 1 cut(s) 67
PagI TCATGA 1 cut(s) 387
PciSI GCTCTTC 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PctI GAATGC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 207
PkrI GCNGC 2 cut(s) 28, 329
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 130, 301
PspPI GGNCC 3 cut(s) 46, 96, 278
PsuI RGATCY 1 cut(s) 480
RsaI GTAC 2 cut(s) 83, 536
RsaNI GTAC 2 cut(s) 82, 535
SapI GCTCTTC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 2 cut(s) 27, 328
Sau3AI GATC 4 cut(s) 91, 147, 480, 492
Sau96I GGNCC 3 cut(s) 46, 96, 278
ScaI AGTACT 1 cut(s) 83
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 176, 257
SduI GDGCHC 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 67
SinI GGWCC 1 cut(s) 96
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SsiI CCGC 3 cut(s) 26, 29, 328
SspI AATATT 1 cut(s) 432
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 174, 255
StyI CCWWGG 1 cut(s) 246
TaiI ACGT 2 cut(s) 38, 216
TaqI TCGA 1 cut(s) 68
TaqII GACCGA 1 cut(s) 84
TatI WGTACW 1 cut(s) 81
TauI GCSGC 2 cut(s) 29, 330
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 2 cut(s) 31, 36
Tsp45I GTSAC 2 cut(s) 31, 36
TspDTI ATGAA 3 cut(s) 273, 361, 485
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 48
XhoI CTCGAG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 134
ZraI GACGTC 1 cut(s) 36
ZrmI AGTACT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.