RchiOBHm_Chr6g0301161

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002176
Physical Location & Seq
Reverse (-)
61687285 .. 61687461
177 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27047

Sequence Viewer

Length: 177 bp
ATGGACCGGAAAATTGAAGCTTTGGATGGGGCTTTACTGCCTACCAAAGTTGCTGATGAGTTCAGGCCTTTCGTTCGCCGCCTCTTGGAGTTCAAGTTCTGGTATTCCATCACAAAGGCTTTCATTATTGCATTTATCATGACCTTTATCTTTGTGTTGGATGTGCCTGTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

58

Amino Acids

6.89

Weight (kDa)

8.14

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 6 - 58 6e-20 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 2 cut(s) 17, 94
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AoxI GGCC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BccI CCATC 2 cut(s) 20, 116
BfaI CTAG 1 cut(s) 175
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BsaWI WCCGGW 1 cut(s) 6
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 85
BseGI GGATG 2 cut(s) 31, 166
BseLI CCNNNNNNNGG 1 cut(s) 85
BshFI GGCC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 85
BsnI GGCC 1 cut(s) 67
BspACI CCGC 1 cut(s) 79
BspANI GGCC 1 cut(s) 67
BspHI TCATGA 1 cut(s) 138
BstF5I GGATG 2 cut(s) 31, 166
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 2 cut(s) 31, 166
CciI TCATGA 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 139
CviJI RGCY 4 cut(s) 20, 32, 67, 119
CviKI_1 RGCY 4 cut(s) 20, 32, 67, 119
Eco147I AGGCCT 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 4
FaeI CATG 1 cut(s) 142
FaiI YATR 1 cut(s) 140
FatI CATG 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 2 cut(s) 38, 173
Fsp4HI GCNGC 1 cut(s) 79
FspBI CTAG 1 cut(s) 175
GluI GCNGC 1 cut(s) 79
HaeIII GGCC 1 cut(s) 67
HapII CCGG 1 cut(s) 7
Hin1II CATG 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 18
HpaII CCGG 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 131
Hsp92II CATG 1 cut(s) 142
LpnPI CCDG 3 cut(s) 20, 49, 85
MaeI CTAG 1 cut(s) 175
MluCI AATT 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 1 cut(s) 92
MspI CCGG 1 cut(s) 7
NlaIII CATG 1 cut(s) 142
PagI TCATGA 1 cut(s) 138
PceI AGGCCT 1 cut(s) 67
PkrI GCNGC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 4
SatI GCNGC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 4
SetI ASST 2 cut(s) 22, 146
SgeI CNNG 6 cut(s) 19, 76, 97, 106, 112, 151
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 1 cut(s) 79
SspMI CTAG 1 cut(s) 175
StuI AGGCCT 1 cut(s) 67
TasI AATT 1 cut(s) 12
TauI GCSGC 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 4
XspI CTAG 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.