Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002176

Physical Location & Seq

Genomic Coordinates Forward (+)

12435377 .. 12436965

Gene Structure 1589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG148300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTATTGGAGGCGAATCTCCTGTGATAGAAATTTGGTCCAAGAAAACAGAAGTAAATCTGGGCTGCTTGACCCGACCCGGTCTCTAGGCCTTCTGACTAGTACGCGGGTGAATCACACTCTCCTTTATCAGACGCAACCCAATAGCTTAGCGGCAACCGTCGTGACTTCCTCGTCTTGCTCGTTTTGGCTGTCCACGCTCGAAACCCTAATTCCAGAGATTCGCGGCGAAAATCACAACCCCGATTCCGATGGAGGGAATCGGCAGCGACCGAGCGGCGGAGACGTCACCAGTGGCCCAATGGAAGAGCGATTTCTCGAGAGCATTCCGGGCTTCTATGTGGTCTCGTATGGACTCGGAATCTACGTCTTGAACCTCTTGATTGGCTTCTTCTCACCCAAGGTTGACCCGGAGCTTGAACCTTTGGATGGGCCTTCACTGCCTACCAAGGGTGCTGATGAGTTCAAGCCTTTCGTTCGCCGCCTCCCCGAGTTTAAGTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

168

Amino Acids

18.84

Weight (kDa)

5.71

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	109 - 168	1.7e-22	Rer1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18240 AT2G18240
fragaria_vesca	FvH4_1g12980 FvH4_1g12980
malus_domestica	MD02G1144300.v1.1 MD12G1092000.v1.1 MD15G1257900.v1.1 MD15G1258000.v1.1
prunus_persica	Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1
pyrus_communis	pycom02g11420 pycom15g22550 pycom15g22560
rosa_chinensis	RchiOBHm_Chr2g0101041 RchiOBHm_Chr2g0101051 RchiOBHm_Chr6g0247461 RchiOBHm_Chr6g0301161
rosa_laevigata	RLG00000017047
rosa_multiflora	Rmu_co7998428.1_g000001 Rmu_sc0000147.1_g000085 Rmu_sc0000193.1_g000024 Rmu_sc0001862.1_g000002 Rmu_sc0002886.1_g000003 Rmu_sc0007698.1_g000016 Rmu_sc0007698.1_g000017
rosa_roxburghii	Rroxscaffold_2G00141610
rosa_rugosa	Rorug02G0096300 Rorug07G0032000
rosa_samantha	Rh2AG142700 Rh2AG142800 Rh2BG147800 Rh2BG147900 Rh2CG149100 Rh2CG149300 Rh2DG148300 Rh2DG148400 Rh4DG139700 Rh5AG160300 Rh6AG040800 Rh6BG035900
rosa_wichuraiana	Rw2G011240 Rw4G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	172
AatII	GACGTC	1 cut(s)	288
AccBSI	CCGCTC	1 cut(s)	276
AccII	CGCG	2 cut(s)	106, 225
AciI	CCGC	6 cut(s)	106, 152, 225, 276, 279, 481
AcsI	RAATTY	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	4 cut(s)	255, 278, 428, 449
AgsI	TTSAA	3 cut(s)	373, 419, 466
AhlI	ACTAGT	1 cut(s)	98
AluBI	AGCT	2 cut(s)	147, 415
AluI	AGCT	2 cut(s)	147, 415
Alw26I	GTCTC	3 cut(s)	87, 276, 349
Ama87I	CYCGRG	2 cut(s)	317, 488
AoxI	GGCC	3 cut(s)	88, 295, 431
ApeKI	GCWGC	2 cut(s)	64, 265
ApoI	RAATTY	1 cut(s)	31
AspS9I	GGNCC	3 cut(s)	37, 296, 431
AsuC2I	CCSGG	3 cut(s)	79, 330, 410
AsuHPI	GGTGA	3 cut(s)	121, 280, 387
AvaI	CYCGRG	2 cut(s)	317, 488
AvaII	GGWCC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	51, 277
BccI	CCATC	2 cut(s)	245, 422
BcnI	CCSGG	3 cut(s)	79, 330, 410
BcoDI	GTCTC	3 cut(s)	87, 276, 349
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	2 cut(s)	86, 99
BisI	GCNGC	6 cut(s)	65, 153, 226, 266, 277, 481
BlpI	GCTNAGC	1 cut(s)	148
BlsI	GCNGC	6 cut(s)	66, 154, 227, 267, 278, 482
Bme1390I	CCNGG	3 cut(s)	79, 330, 410
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	2 cut(s)	317, 488
BmgT120I	GGNCC	3 cut(s)	37, 296, 431
BmrFI	CCNGG	3 cut(s)	79, 330, 410
Bpu1102I	GCTNAGC	1 cut(s)	148
BpuMI	CCSGG	3 cut(s)	79, 330, 410
BsaHI	GRCGYC	1 cut(s)	285
BsaI	GGTCTC	2 cut(s)	87, 349
BsaJI	CCNNGG	2 cut(s)	399, 447
Bsc4I	CCNNNNNNNGG	4 cut(s)	255, 278, 428, 449
Bse1I	ACTGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	399, 447
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	4 cut(s)	255, 278, 428, 449
BseNI	ACTGG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	51, 277
Bsh1236I	CGCG	2 cut(s)	106, 225
Bsh1285I	CGRYCG	1 cut(s)	272
BshFI	GGCC	3 cut(s)	90, 297, 433
BsiEI	CGRYCG	1 cut(s)	272
BsiHKCI	CYCGRG	2 cut(s)	317, 488
BsiSI	CCGG	3 cut(s)	79, 329, 410
BslI	CCNNNNNNNGG	4 cut(s)	255, 278, 428, 449
BsmAI	GTCTC	3 cut(s)	87, 276, 349
BsmBI	CGTCTC	1 cut(s)	276
BsmI	GAATGC	1 cut(s)	324
BsnI	GGCC	3 cut(s)	90, 297, 433
Bso31I	GGTCTC	2 cut(s)	87, 349
BsoBI	CYCGRG	2 cut(s)	317, 488
Bsp1720I	GCTNAGC	1 cut(s)	148
BspACI	CCGC	6 cut(s)	106, 152, 225, 276, 279, 481
BspANI	GGCC	3 cut(s)	90, 297, 433
BspFNI	CGCG	2 cut(s)	106, 225
BspQI	GCTCTTC	1 cut(s)	300
BspTNI	GGTCTC	2 cut(s)	87, 349
BsrBI	CCGCTC	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	399, 447
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	399, 447
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	300
BstACI	GRCGYC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	2 cut(s)	106, 225
BstMAI	GTCTC	3 cut(s)	87, 276, 349
BstMCI	CGRYCG	1 cut(s)	272
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 330, 439
BstSCI	CCNGG	3 cut(s)	77, 328, 408
BstUI	CGCG	2 cut(s)	106, 225
BstV1I	GCAGC	2 cut(s)	51, 277
BsuRI	GGCC	3 cut(s)	90, 297, 433
BtsCI	GGATG	1 cut(s)	433
BtsI	GCAGTG	1 cut(s)	437
BtsIMutI	CAGTG	2 cut(s)	298, 437
Cfr13I	GGNCC	3 cut(s)	37, 296, 431
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	102
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	1 cut(s)	148
DrdI	GACNNNNNNGTC	1 cut(s)	172
DseDI	GACNNNNNNGTC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	399, 447
Eco147I	AGGCCT	1 cut(s)	90
Eco31I	GGTCTC	2 cut(s)	87, 349
Eco47I	GGWCC	1 cut(s)	37
Eco88I	CYCGRG	2 cut(s)	317, 488
EcoT14I	CCWWGG	2 cut(s)	399, 447
ErhI	CCWWGG	2 cut(s)	399, 447
Esp3I	CGTCTC	1 cut(s)	276
FaiI	YATR	2 cut(s)	339, 351
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	6 cut(s)	65, 153, 226, 266, 277, 481
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	6 cut(s)	65, 153, 226, 266, 277, 481
FspBI	CTAG	2 cut(s)	86, 99
GluI	GCNGC	6 cut(s)	65, 153, 226, 266, 277, 481
HaeIII	GGCC	3 cut(s)	90, 297, 433
HapII	CCGG	3 cut(s)	79, 329, 410
HgaI	GACGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	7 cut(s)	15, 112, 220, 245, 259, 354, 360
HpaII	CCGG	3 cut(s)	79, 329, 410
HphI	GGTGA	3 cut(s)	121, 280, 387
Hpy166II	GTNNAC	2 cut(s)	195, 406
Hpy188I	TCNGA	4 cut(s)	96, 132, 250, 359
Hpy188III	TCNNGA	6 cut(s)	163, 215, 317, 319, 370, 379
Hpy8I	GTNNAC	2 cut(s)	195, 406
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	101, 444
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	2 cut(s)	285, 366
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 330, 439
HpyF3I	CTNAG	1 cut(s)	148
HpySE526I	ACGT	2 cut(s)	285, 366
Hsp92I	GRCGYC	1 cut(s)	285
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	8 cut(s)	34, 45, 92, 228, 304, 342, 423, 487
Lsp1109I	GCAGC	2 cut(s)	51, 277
MaeI	CTAG	2 cut(s)	86, 99
MaeII	ACGT	2 cut(s)	285, 366
MaeIII	GTNAC	2 cut(s)	163, 286
MbiI	CCGCTC	1 cut(s)	276
MboII	GAAGA	2 cut(s)	317, 382
MluCI	AATT	2 cut(s)	31, 210
MlyI	GAGTC	1 cut(s)	348
MnlI	CCTC	5 cut(s)	3, 181, 248, 386, 494
MseI	TTAA	1 cut(s)	495
MspI	CCGG	3 cut(s)	79, 329, 410
MspR9I	CCNGG	3 cut(s)	79, 330, 410
Mva1269I	GAATGC	1 cut(s)	324
MvnI	CGCG	2 cut(s)	106, 225
MwoI	GCNNNNNNNGC	3 cut(s)	196, 330, 439
NciI	CCSGG	3 cut(s)	79, 330, 410
NmuCI	GTSAC	2 cut(s)	163, 286
PaeR7I	CTCGAG	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	90
PciSI	GCTCTTC	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	2 cut(s)	179, 363
PctI	GAATGC	1 cut(s)	324
PfeI	GAWTC	6 cut(s)	15, 112, 220, 245, 259, 360
PflFI	GACNNNGTC	1 cut(s)	79
PkrI	GCNGC	6 cut(s)	66, 154, 227, 267, 278, 482
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PspPI	GGNCC	3 cut(s)	37, 296, 431
PsyI	GACNNNGTC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	6 cut(s)	65, 153, 226, 266, 277, 481
Sau96I	GGNCC	3 cut(s)	37, 296, 431
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	3 cut(s)	79, 330, 410
SetI	ASST	7 cut(s)	149, 288, 369, 378, 405, 417, 424
Sfr274I	CTCGAG	1 cut(s)	317
SinI	GGWCC	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	98
Sse9I	AATT	2 cut(s)	31, 210
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	6 cut(s)	106, 152, 225, 276, 279, 481
SspMI	CTAG	2 cut(s)	86, 99
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	3 cut(s)	77, 328, 408
StyI	CCWWGG	2 cut(s)	399, 447
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	2 cut(s)	288, 369
TaqI	TCGA	2 cut(s)	201, 318
TaqII	GACCGA	1 cut(s)	286
TasI	AATT	2 cut(s)	31, 210
TauI	GCSGC	4 cut(s)	155, 228, 279, 483
TfiI	GAWTC	6 cut(s)	15, 112, 220, 245, 259, 360
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	2 cut(s)	298, 444
TseFI	GTSAC	2 cut(s)	163, 286
TseI	GCWGC	2 cut(s)	64, 265
Tsp45I	GTSAC	2 cut(s)	163, 286
TspRI	CASTG	2 cut(s)	298, 444
Tth111I	GACNNNGTC	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XhoI	CTCGAG	1 cut(s)	317
XspI	CTAG	2 cut(s)	86, 99
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.