Rh6AG040800

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002176
Physical Location & Seq
Forward (+)
5944793 .. 5945020
228 bp
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UTR
Exon/CDS
Intron
Rh6AG040800.1

Sequence Viewer

Length: 228 bp
ATGGACCGGGAAATTGAAGCTTTGGATGGGGCTTTACTGCCTACCAAAGGTTCTGATGAGTTCAGGCCTTTCATTTGCCGCCTCTCGGAGCTCAAGTTCTGGTATTCCATCACAAAGGCTTTCATTATTGCATTTATCATGACCTTTATCTTTGTGTTGGATGTGCCTGTTTTCTGGCCAATGTTGAAATGCTACTGGATTATGCTATTTGTCCTCACAATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

75

Amino Acids

8.95

Weight (kDa)

6.12

Isoelectric Point (pI)

27.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 6 - 75 2.5e-28 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
AcoI YGGCCR 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 47, 85
AgsI TTSAA 2 cut(s) 17, 187
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 2 cut(s) 20, 91
AluI AGCT 2 cut(s) 20, 91
Alw21I GWGCWC 1 cut(s) 93
AoxI GGCC 2 cut(s) 65, 176
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 8
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 178
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BccI CCATC 2 cut(s) 20, 116
BcnI CCSGG 1 cut(s) 8
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 85
Bse1I ACTGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 31, 166
BseLI CCNNNNNNNGG 2 cut(s) 47, 85
BseNI ACTGG 1 cut(s) 200
BshFI GGCC 2 cut(s) 67, 178
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 47, 85
BsnI GGCC 2 cut(s) 67, 178
Bsp1286I GDGCHC 1 cut(s) 93
BspACI CCGC 1 cut(s) 79
BspANI GGCC 2 cut(s) 67, 178
BspHI TCATGA 1 cut(s) 138
BsrI ACTGG 1 cut(s) 200
BstENI CCTNNNNNAGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 31, 166
BstSCI CCNGG 1 cut(s) 6
BsuRI GGCC 2 cut(s) 67, 178
BtsCI GGATG 2 cut(s) 31, 166
CciI TCATGA 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 139
CviJI RGCY 6 cut(s) 20, 32, 67, 91, 119, 178
CviKI_1 RGCY 6 cut(s) 20, 32, 67, 91, 119, 178
EaeI YGGCCR 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 91
Eco147I AGGCCT 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 93
FaeI CATG 1 cut(s) 142
FaiI YATR 2 cut(s) 140, 203
FatI CATG 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 2 cut(s) 38, 173
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 79
HaeIII GGCC 2 cut(s) 67, 178
HapII CCGG 1 cut(s) 7
Hin1II CATG 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 18
HpaII CCGG 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 55, 88
Hpy188III TCNNGA 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 131
Hsp92II CATG 1 cut(s) 142
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 6 cut(s) 20, 49, 85, 160, 180, 181
MhlI GDGCHC 1 cut(s) 93
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 1 cut(s) 12
MluNI TGGCCA 1 cut(s) 178
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 2 cut(s) 92, 224
Mox20I TGGCCA 1 cut(s) 178
MscI TGGCCA 1 cut(s) 178
Msp20I TGGCCA 1 cut(s) 178
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 8
NciI CCSGG 1 cut(s) 8
NlaIII CATG 1 cut(s) 142
PagI TCATGA 1 cut(s) 138
PceI AGGCCT 1 cut(s) 67
PkrI GCNGC 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 93
SatI GCNGC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 93
SetI ASST 4 cut(s) 22, 52, 93, 146
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 1 cut(s) 79
SstI GAGCTC 1 cut(s) 93
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 6
TasI AATT 1 cut(s) 12
TauI GCSGC 1 cut(s) 81
TspDTI ATGAA 2 cut(s) 61, 112
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.