Rmu_sc0007698.1_g000017

Rer1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007698.1
OG0002176
Physical Location & Seq
Reverse (-)
69777 .. 71340
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007698.1_g000017.1.cds

Sequence Viewer

Length: 708 bp
atgtattggagggatagaaatttggtccaagaaaacagaagtaaatctgggctgcttgacccgacccggtctctaggccttctgactagtacgcgggtgaatcacaccattctttatcagacgcaacccaatagcttagcggcaatcgtcgtgacttcctcgtcttgctcgttttggctgtccacgctcgaaaccctaattccagagattcgcggcgaaaatcacaaccccgattccgatggagggactcggcagcgaccgagcggcggggacgtcaccagtggcccaatggaagagcgatttctcgagagcattccagtactacctggatcgggcttctatgtggtctcgtatgggctcggaatctacgtcttgaacctcttgattggcttcttctcaccgaaagttgacccggagcttgaacctttggatggcccttcactgccgaccaaaggtgctgatgagttcaagccttttgttcgccgcctccccgagtttaagttctggtattccatcacaaaggctttcattattgcatttatcatgaccttcttctctgtgctggatgtgcctgttttctggccaatattgttatgctactggattgtgctttttgtcctcacaatgaaacgacagatcctacacatgatcaaatacaaatatgtcccatttgatattggaaagcagaggtacactggaaagaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

235

Amino Acids

26.8

Weight (kDa)

9.0

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 160
AatII GACGTC 1 cut(s) 276
AccBSI CCGCTC 1 cut(s) 264
AccII CGCG 2 cut(s) 94, 213
AciI CCGC 6 cut(s) 94, 140, 213, 264, 267, 484
AclWI GGATC 2 cut(s) 337, 631
AcoI YGGCCR 1 cut(s) 581
AcsI RAATTY 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 273
AfaI GTAC 3 cut(s) 91, 321, 692
AfiI CCNNNNNNNGG 5 cut(s) 243, 266, 332, 431, 452
AgsI TTSAA 3 cut(s) 376, 422, 469
AhlI ACTAGT 1 cut(s) 86
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 2 cut(s) 135, 418
AluI AGCT 2 cut(s) 135, 418
Alw26I GTCTC 2 cut(s) 75, 352
AlwI GGATC 2 cut(s) 337, 631
Ama87I CYCGRG 2 cut(s) 305, 491
AoxI GGCC 4 cut(s) 76, 283, 433, 581
ApeKI GCWGC 2 cut(s) 52, 253
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 3 cut(s) 25, 284, 434
AsuC2I CCSGG 2 cut(s) 67, 413
AsuHPI GGTGA 3 cut(s) 109, 268, 390
AvaI CYCGRG 2 cut(s) 305, 491
AvaII GGWCC 1 cut(s) 25
BalI TGGCCA 1 cut(s) 583
BanII GRGCYC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 39, 265
BccI CCATC 3 cut(s) 233, 425, 521
BciT130I CCWGG 1 cut(s) 327
BclI TGATCA 1 cut(s) 648
BcnI CCSGG 2 cut(s) 67, 413
BcoDI GTCTC 2 cut(s) 75, 352
BcuI ACTAGT 1 cut(s) 86
BfaI CTAG 2 cut(s) 74, 87
BisI GCNGC 6 cut(s) 53, 141, 214, 254, 265, 484
BlpI GCTNAGC 1 cut(s) 136
BlsI GCNGC 6 cut(s) 54, 142, 215, 255, 266, 485
BmcAI AGTACT 1 cut(s) 321
Bme1390I CCNGG 3 cut(s) 67, 327, 413
Bme18I GGWCC 1 cut(s) 25
BmeT110I CYCGRG 2 cut(s) 305, 491
BmgT120I GGNCC 3 cut(s) 25, 284, 434
BmrFI CCNGG 3 cut(s) 67, 327, 413
Bpu1102I GCTNAGC 1 cut(s) 136
BpuMI CCSGG 2 cut(s) 67, 413
BsaHI GRCGYC 1 cut(s) 273
BsaI GGTCTC 2 cut(s) 75, 352
Bsc4I CCNNNNNNNGG 5 cut(s) 243, 266, 332, 431, 452
Bse1I ACTGG 4 cut(s) 279, 317, 605, 700
BseBI CCWGG 1 cut(s) 327
BseGI GGATG 2 cut(s) 436, 571
BseLI CCNNNNNNNGG 5 cut(s) 243, 266, 332, 431, 452
BseNI ACTGG 4 cut(s) 279, 317, 605, 700
BseXI GCAGC 2 cut(s) 39, 265
Bsh1236I CGCG 2 cut(s) 94, 213
Bsh1285I CGRYCG 1 cut(s) 260
BshFI GGCC 4 cut(s) 78, 285, 435, 583
BsiEI CGRYCG 1 cut(s) 260
BsiHKCI CYCGRG 2 cut(s) 305, 491
BsiSI CCGG 2 cut(s) 67, 413
BslFI GGGAC 3 cut(s) 259, 284, 650
BslI CCNNNNNNNGG 5 cut(s) 243, 266, 332, 431, 452
BsmAI GTCTC 2 cut(s) 75, 352
BsmFI GGGAC 3 cut(s) 259, 284, 650
BsmI GAATGC 1 cut(s) 312
BsnI GGCC 4 cut(s) 78, 285, 435, 583
Bso31I GGTCTC 2 cut(s) 75, 352
BsoBI CYCGRG 2 cut(s) 305, 491
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 3 cut(s) 329, 636, 648
Bsp1720I GCTNAGC 1 cut(s) 136
BspACI CCGC 6 cut(s) 94, 140, 213, 264, 267, 484
BspANI GGCC 4 cut(s) 78, 285, 435, 583
BspFNI CGCG 2 cut(s) 94, 213
BspHI TCATGA 1 cut(s) 543
BspPI GGATC 2 cut(s) 337, 631
BspQI GCTCTTC 1 cut(s) 288
BspTNI GGTCTC 2 cut(s) 75, 352
BsrBI CCGCTC 1 cut(s) 264
BsrI ACTGG 4 cut(s) 279, 317, 605, 700
BssMI GATC 3 cut(s) 329, 636, 648
BssNI GRCGYC 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 136
BstF5I GGATG 2 cut(s) 436, 571
BstFNI CGCG 2 cut(s) 94, 213
BstKTI GATC 3 cut(s) 332, 639, 651
BstMAI GTCTC 2 cut(s) 75, 352
BstMBI GATC 3 cut(s) 329, 636, 648
BstMCI CGRYCG 1 cut(s) 260
BstMWI GCNNNNNNNGC 2 cut(s) 184, 568
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 3 cut(s) 65, 325, 411
BstUI CGCG 2 cut(s) 94, 213
BstV1I GCAGC 2 cut(s) 39, 265
BstX2I RGATCY 1 cut(s) 636
BstYI RGATCY 1 cut(s) 636
BsuRI GGCC 4 cut(s) 78, 285, 435, 583
BtsCI GGATG 2 cut(s) 436, 571
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 3 cut(s) 286, 440, 693
CciI TCATGA 1 cut(s) 543
Cfr13I GGNCC 3 cut(s) 25, 284, 434
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 90, 320, 691
CviAII CATG 2 cut(s) 544, 646
CviQI GTAC 3 cut(s) 90, 320, 691
DdeI CTNAG 1 cut(s) 136
DpnI GATC 3 cut(s) 331, 638, 650
DpnII GATC 3 cut(s) 329, 636, 648
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 581
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 360
Eco31I GGTCTC 2 cut(s) 75, 352
Eco47I GGWCC 1 cut(s) 25
Eco88I CYCGRG 2 cut(s) 305, 491
EcoRII CCWGG 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 360
FaeI CATG 2 cut(s) 547, 649
FaiI YATR 6 cut(s) 342, 354, 545, 595, 647, 663
FaqI GGGAC 3 cut(s) 259, 284, 650
FatI CATG 2 cut(s) 543, 645
FauI CCCGC 2 cut(s) 87, 260
FbaI TGATCA 1 cut(s) 648
Fnu4HI GCNGC 6 cut(s) 53, 141, 214, 254, 265, 484
FokI GGATG 2 cut(s) 443, 578
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 6 cut(s) 53, 141, 214, 254, 265, 484
FspBI CTAG 2 cut(s) 74, 87
GluI GCNGC 6 cut(s) 53, 141, 214, 254, 265, 484
HaeIII GGCC 4 cut(s) 78, 285, 435, 583
HapII CCGG 2 cut(s) 67, 413
HgaI GACGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 2 cut(s) 547, 649
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 5 cut(s) 100, 208, 233, 247, 363
HpaII CCGG 2 cut(s) 67, 413
HphI GGTGA 3 cut(s) 109, 268, 390
Hpy166II GTNNAC 3 cut(s) 183, 409, 693
Hpy188I TCNGA 4 cut(s) 84, 120, 238, 362
Hpy188III TCNNGA 7 cut(s) 151, 203, 305, 307, 373, 382, 544
Hpy8I GTNNAC 3 cut(s) 183, 409, 693
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 89, 447, 559
HpyCH4IV ACGT 2 cut(s) 273, 369
HpyCH4V TGCA 1 cut(s) 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 568
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 2 cut(s) 273, 369
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 2 cut(s) 547, 649
Ksp22I TGATCA 1 cut(s) 648
Kzo9I GATC 3 cut(s) 329, 636, 648
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 2 cut(s) 39, 265
MaeI CTAG 2 cut(s) 74, 87
MaeII ACGT 2 cut(s) 273, 369
MaeIII GTNAC 2 cut(s) 151, 274
MalI GATC 3 cut(s) 331, 638, 650
MbiI CCGCTC 1 cut(s) 264
MboI GATC 3 cut(s) 329, 636, 648
MboII GAAGA 3 cut(s) 305, 385, 544
MflI RGATCY 1 cut(s) 636
MhlI GDGCHC 1 cut(s) 360
MlsI TGGCCA 1 cut(s) 583
MluCI AATT 2 cut(s) 19, 198
MluNI TGGCCA 1 cut(s) 583
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 7 cut(s) 3, 169, 236, 389, 497, 629, 681
Mox20I TGGCCA 1 cut(s) 583
MscI TGGCCA 1 cut(s) 583
MseI TTAA 1 cut(s) 498
Msp20I TGGCCA 1 cut(s) 583
MspI CCGG 2 cut(s) 67, 413
MspR9I CCNGG 3 cut(s) 67, 327, 413
Mva1269I GAATGC 1 cut(s) 312
MvaI CCWGG 1 cut(s) 327
MvnI CGCG 2 cut(s) 94, 213
MwoI GCNNNNNNNGC 2 cut(s) 184, 568
NciI CCSGG 2 cut(s) 67, 413
NdeII GATC 3 cut(s) 329, 636, 648
NlaIII CATG 2 cut(s) 547, 649
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 2 cut(s) 151, 274
PaeR7I CTCGAG 1 cut(s) 305
PagI TCATGA 1 cut(s) 543
PceI AGGCCT 1 cut(s) 78
PciSI GCTCTTC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 2 cut(s) 167, 366
PctI GAATGC 1 cut(s) 312
PfeI GAWTC 4 cut(s) 100, 208, 233, 363
PflFI GACNNNGTC 1 cut(s) 67
PkrI GCNGC 6 cut(s) 54, 142, 215, 255, 266, 485
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspPI GGNCC 3 cut(s) 25, 284, 434
PsuI RGATCY 1 cut(s) 636
PsyI GACNNNGTC 1 cut(s) 67
RsaI GTAC 3 cut(s) 91, 321, 692
RsaNI GTAC 3 cut(s) 90, 320, 691
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 6 cut(s) 53, 141, 214, 254, 265, 484
Sau3AI GATC 3 cut(s) 329, 636, 648
Sau96I GGNCC 3 cut(s) 25, 284, 434
ScaI AGTACT 1 cut(s) 321
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 3 cut(s) 67, 327, 413
SduI GDGCHC 1 cut(s) 360
Sfr274I CTCGAG 1 cut(s) 305
SinI GGWCC 1 cut(s) 25
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SpeI ACTAGT 1 cut(s) 86
Sse9I AATT 2 cut(s) 19, 198
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 6 cut(s) 94, 140, 213, 264, 267, 484
SspI AATATT 1 cut(s) 588
SspMI CTAG 2 cut(s) 74, 87
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 3 cut(s) 65, 325, 411
TaiI ACGT 2 cut(s) 276, 372
TaqI TCGA 2 cut(s) 189, 306
TaqII GACCGA 1 cut(s) 274
TasI AATT 2 cut(s) 19, 198
TatI WGTACW 1 cut(s) 319
TauI GCSGC 4 cut(s) 143, 216, 267, 486
TfiI GAWTC 4 cut(s) 100, 208, 233, 363
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 3 cut(s) 286, 447, 700
TseFI GTSAC 2 cut(s) 151, 274
TseI GCWGC 2 cut(s) 52, 253
Tsp45I GTSAC 2 cut(s) 151, 274
TspDTI ATGAA 2 cut(s) 517, 641
TspRI CASTG 3 cut(s) 286, 447, 700
Tth111I GACNNNGTC 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 305
XspI CTAG 2 cut(s) 74, 87
ZraI GACGTC 1 cut(s) 274
ZrmI AGTACT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.