Rw4G011840

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002176
Physical Location & Seq
Reverse (-)
27994610 .. 27997201
2592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G011840.1

Sequence Viewer

Length: 582 bp
ATGGAGGGACTCAGCAGCGACCGAGCGGCGGAGTTGTCACCAGTGGCCCAGTGGAAGAGCGATTTCTCGAGAGCATTCCAGTACTACCTGGATCGTTCCACGCCTCACACACTTCAGAGGTGGCTTGGAACCCTAGTTGTGGCGATGATCTACATTATGCGAGTCTACTATGTCCAGGGCTTCTATGTGGTCTCGTATGGGCTCGGAATCTACTTCTTGAACCTCTTGATTGGCTTCTTCTCACCCAAGGTTGACCCGGAGCTTGAAGCTTTGGATGGCCCTTCACTGCCTACCAAAGGTGCTGATGAGTTCAAGCCTTTCGTTCGCCGCCTCCCCGAGTTTAAGTTCTGGTATTCAATCACAAAGGCTTTTGTTATTGCATTTATCATGACCTTCATCTCTGTACTGGATGTGCCTGTTTTCTGGCCGATATTGTTATGCTACTGGATTGTGCTATTTGTCCTCACAATGAAACGACAGATCCTACACATGATCAAATACAAATATGTCCCATTTGATATTGGAAAGCAGCTGCAAAAAAAGGATGCCAAGGATGCTGCTACGAAGGTGATGAGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

193

Amino Acids

22.47

Weight (kDa)

9.3

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 18 - 177 8.9e-75 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 580
AccBSI CCGCTC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 165
AciI CCGC 3 cut(s) 26, 29, 328
AclWI GGATC 2 cut(s) 99, 475
AcoI YGGCCR 1 cut(s) 425
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 2 cut(s) 83, 405
AfiI CCNNNNNNNGG 3 cut(s) 28, 139, 296
AgsI TTSAA 4 cut(s) 220, 266, 313, 357
AjnI CCWGG 2 cut(s) 87, 174
AluBI AGCT 3 cut(s) 262, 269, 532
AluI AGCT 3 cut(s) 262, 269, 532
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 2 cut(s) 99, 475
Ama87I CYCGRG 2 cut(s) 67, 335
AoxI GGCC 3 cut(s) 45, 277, 425
ApeKI GCWGC 4 cut(s) 15, 529, 532, 557
AspS9I GGNCC 2 cut(s) 46, 278
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 3 cut(s) 30, 234, 580
AvaI CYCGRG 2 cut(s) 67, 335
BanII GRGCYC 1 cut(s) 204
BbvI GCAGC 4 cut(s) 27, 519, 541, 544
BccI CCATC 1 cut(s) 269
BciT130I CCWGG 2 cut(s) 89, 176
BclI TGATCA 1 cut(s) 492
BcnI CCSGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 134
BisI GCNGC 6 cut(s) 16, 27, 328, 530, 533, 558
BlsI GCNGC 6 cut(s) 17, 28, 329, 531, 534, 559
BmcAI AGTACT 1 cut(s) 83
Bme1390I CCNGG 3 cut(s) 89, 176, 257
BmeT110I CYCGRG 2 cut(s) 67, 335
BmgT120I GGNCC 2 cut(s) 46, 278
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 3 cut(s) 89, 176, 257
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 535, 544
BmuI ACTGGG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 175, 246, 549
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 139, 296
Bse1I ACTGG 5 cut(s) 41, 49, 79, 411, 449
BseBI CCWGG 2 cut(s) 89, 176
BseDI CCNNGG 3 cut(s) 175, 246, 549
BseGI GGATG 4 cut(s) 280, 415, 550, 559
BseLI CCNNNNNNNGG 3 cut(s) 28, 139, 296
BseMII CTCAG 1 cut(s) 25
BseNI ACTGG 5 cut(s) 41, 49, 79, 411, 449
BseXI GCAGC 4 cut(s) 27, 519, 541, 544
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 3 cut(s) 47, 279, 427
BsiEI CGRYCG 1 cut(s) 22
BsiHKCI CYCGRG 2 cut(s) 67, 335
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 2 cut(s) 21, 494
BslI CCNNNNNNNGG 3 cut(s) 28, 139, 296
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 2 cut(s) 21, 494
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 3 cut(s) 47, 279, 427
Bso31I GGTCTC 1 cut(s) 196
BsoBI CYCGRG 2 cut(s) 67, 335
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 4 cut(s) 91, 147, 480, 492
BspACI CCGC 3 cut(s) 26, 29, 328
BspANI GGCC 3 cut(s) 47, 279, 427
BspCNI CTCAG 1 cut(s) 24
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 2 cut(s) 99, 475
BspQI GCTCTTC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 196
BsrBI CCGCTC 1 cut(s) 26
BsrI ACTGG 5 cut(s) 41, 49, 79, 411, 449
BssECI CCNNGG 3 cut(s) 175, 246, 549
BssMI GATC 4 cut(s) 91, 147, 480, 492
BssT1I CCWWGG 2 cut(s) 246, 549
Bst2UI CCWGG 2 cut(s) 89, 176
Bst6I CTCTTC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 11
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 4 cut(s) 280, 415, 550, 559
BstKTI GATC 4 cut(s) 94, 150, 483, 495
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 4 cut(s) 91, 147, 480, 492
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNI CCWGG 2 cut(s) 89, 176
BstSCI CCNGG 3 cut(s) 87, 174, 255
BstV1I GCAGC 4 cut(s) 27, 519, 541, 544
BstX2I RGATCY 1 cut(s) 480
BstYI RGATCY 1 cut(s) 480
BsuRI GGCC 3 cut(s) 47, 279, 427
BtgZI GCGATG 1 cut(s) 158
BtsCI GGATG 4 cut(s) 280, 415, 550, 559
BtsI GCAGTG 1 cut(s) 284
BtsIMutI CAGTG 3 cut(s) 48, 56, 284
CciI TCATGA 1 cut(s) 387
Cfr13I GGNCC 2 cut(s) 46, 278
Csp6I GTAC 2 cut(s) 82, 404
CviAII CATG 2 cut(s) 388, 490
CviQI GTAC 2 cut(s) 82, 404
DdeI CTNAG 1 cut(s) 11
DpnI GATC 4 cut(s) 93, 149, 482, 494
DpnII GATC 4 cut(s) 91, 147, 480, 492
EaeI YGGCCR 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 246, 549
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 2 cut(s) 67, 335
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoRII CCWGG 2 cut(s) 87, 174
EcoT14I CCWWGG 2 cut(s) 246, 549
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 2 cut(s) 246, 549
FaeI CATG 2 cut(s) 391, 493
FaiI YATR 9 cut(s) 158, 171, 186, 198, 389, 439, 491, 507, 580
FaqI GGGAC 2 cut(s) 21, 494
FatI CATG 2 cut(s) 387, 489
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 6 cut(s) 16, 27, 328, 530, 533, 558
FokI GGATG 4 cut(s) 287, 422, 557, 566
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 6 cut(s) 16, 27, 328, 530, 533, 558
FspBI CTAG 1 cut(s) 134
GluI GCNGC 6 cut(s) 16, 27, 328, 530, 533, 558
HaeIII GGCC 3 cut(s) 47, 279, 427
HapII CCGG 1 cut(s) 257
Hin1II CATG 2 cut(s) 391, 493
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 3 cut(s) 9, 162, 207
HpaII CCGG 1 cut(s) 257
HphI GGTGA 3 cut(s) 30, 234, 580
Hpy166II GTNNAC 2 cut(s) 166, 253
Hpy188I TCNGA 2 cut(s) 117, 206
Hpy188III TCNNGA 5 cut(s) 67, 69, 217, 226, 388
Hpy8I GTNNAC 2 cut(s) 166, 253
HpyAV CCTTC 3 cut(s) 291, 403, 559
HpyCH4V TGCA 2 cut(s) 380, 535
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 2 cut(s) 391, 493
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 4 cut(s) 91, 147, 480, 492
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 1 cut(s) 259
Lsp1109I GCAGC 4 cut(s) 27, 519, 541, 544
LweI GCATC 2 cut(s) 535, 544
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 36
MalI GATC 4 cut(s) 93, 149, 482, 494
MbiI CCGCTC 1 cut(s) 26
MboI GATC 4 cut(s) 91, 147, 480, 492
MboII GAAGA 2 cut(s) 67, 229
MflI RGATCY 1 cut(s) 480
MhlI GDGCHC 1 cut(s) 204
MlyI GAGTC 2 cut(s) 3, 171
MnlI CCTC 5 cut(s) 111, 114, 233, 341, 473
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 3 cut(s) 89, 176, 257
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 2 cut(s) 89, 176
MwoI GCNNNNNNNGC 1 cut(s) 554
NciI CCSGG 1 cut(s) 257
NdeII GATC 4 cut(s) 91, 147, 480, 492
NlaIII CATG 2 cut(s) 391, 493
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 36
PaeR7I CTCGAG 1 cut(s) 67
PagI TCATGA 1 cut(s) 387
PciSI GCTCTTC 1 cut(s) 50
PctI GAATGC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 207
PkrI GCNGC 6 cut(s) 17, 28, 329, 531, 534, 559
PleI GAGTC 2 cut(s) 3, 170
PpsI GAGTC 2 cut(s) 3, 170
PsiI TTATAA 1 cut(s) 580
Psp6I CCWGG 2 cut(s) 87, 174
PspGI CCWGG 2 cut(s) 87, 174
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 2 cut(s) 46, 278
PsuI RGATCY 1 cut(s) 480
PvuII CAGCTG 1 cut(s) 532
RsaI GTAC 2 cut(s) 83, 405
RsaNI GTAC 2 cut(s) 82, 404
SapI GCTCTTC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 6 cut(s) 16, 27, 328, 530, 533, 558
Sau3AI GATC 4 cut(s) 91, 147, 480, 492
Sau96I GGNCC 2 cut(s) 46, 278
ScaI AGTACT 1 cut(s) 83
SchI GAGTC 2 cut(s) 3, 171
ScrFI CCNGG 3 cut(s) 89, 176, 257
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 2 cut(s) 535, 544
Sfr274I CTCGAG 1 cut(s) 67
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SsiI CCGC 3 cut(s) 26, 29, 328
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 3 cut(s) 87, 174, 255
StyI CCWWGG 2 cut(s) 246, 549
TaqI TCGA 1 cut(s) 68
TaqII GACCGA 1 cut(s) 36
TatI WGTACW 2 cut(s) 81, 403
TauI GCSGC 2 cut(s) 29, 330
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 3 cut(s) 48, 56, 291
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 4 cut(s) 15, 529, 532, 557
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 2 cut(s) 385, 485
TspRI CASTG 3 cut(s) 48, 56, 291
XagI CCTNNNNNAGG 1 cut(s) 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 48
XhoI CTCGAG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.