RchiOBHm_Chr2g0101041

Rer1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002176
Physical Location & Seq
Forward (+)
12803016 .. 12804980
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47566

Sequence Viewer

Length: 552 bp
ATGGAGGGAATCGGCAGCGACCGAGCCGCGGAGACGTCACCAGTGGCCCAATGGAAGAGCGATTTCTCGAGAGCATTCCAGTACTATCTGGATCGGTCCACGCCTCACACGCTTCAGAGGTGGCTTGGAACCCTAGTTGTGGCGATGATCTACATTCTGCGTGTCTACTATGTCCAGGGCTTCTATGTGGTCTCGTATGGGCTCGGAATCTACGTCTTGAACCTCTTGATTGGCTTCTTCTCACCCAAGGTTGACCCGGAGCTTGAACCTTTGGATGGGCCTTCACTGCCTACCAAAGGTGCTGATGAGTTCAAGCCTTTCGTTCGCCGCCTCCCCGAGTTTAAGTTCTGGTATTCAATCACAAAGGCTTTCGTTATTGCATTTATCATGACCTTCATCTCTGTACTGGATGTGCCTGTTTTCTGGCCGATATTGTTATGCTACTGGTTTGTGCTATTTGTCCTCACAATGAAACGACAGATCCTACACATGATCAAATACAAATATGTCCCATTTGATATTGGAAAGCAGAGGTACACTGGAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

183

Amino Acids

21.43

Weight (kDa)

9.42

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 18 - 180 9.4e-76 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 165
AccII CGCG 1 cut(s) 29
AciI CCGC 3 cut(s) 27, 29, 328
AclWI GGATC 2 cut(s) 99, 475
AcoI YGGCCR 1 cut(s) 425
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 3 cut(s) 83, 405, 536
AfiI CCNNNNNNNGG 4 cut(s) 28, 139, 275, 296
AgsI TTSAA 4 cut(s) 220, 266, 313, 357
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw26I GTCTC 2 cut(s) 26, 196
AlwI GGATC 2 cut(s) 99, 475
Ama87I CYCGRG 2 cut(s) 67, 335
AoxI GGCC 3 cut(s) 45, 278, 425
ApeKI GCWGC 1 cut(s) 15
AspS9I GGNCC 3 cut(s) 46, 96, 278
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 30, 234
AvaI CYCGRG 2 cut(s) 67, 335
AvaII GGWCC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 1 cut(s) 492
BcnI CCSGG 1 cut(s) 257
BcoDI GTCTC 2 cut(s) 26, 196
BfaI CTAG 1 cut(s) 134
BisI GCNGC 3 cut(s) 16, 27, 328
BlsI GCNGC 3 cut(s) 17, 28, 329
BmcAI AGTACT 1 cut(s) 83
Bme1390I CCNGG 2 cut(s) 176, 257
Bme18I GGWCC 1 cut(s) 96
BmeT110I CYCGRG 2 cut(s) 67, 335
BmgT120I GGNCC 3 cut(s) 46, 96, 278
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 176, 257
BpuMI CCSGG 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 27, 175, 246
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 139, 275, 296
Bse1I ACTGG 5 cut(s) 41, 79, 411, 449, 544
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 3 cut(s) 27, 175, 246
BseGI GGATG 2 cut(s) 280, 415
BseLI CCNNNNNNNGG 4 cut(s) 28, 139, 275, 296
BseNI ACTGG 5 cut(s) 41, 79, 411, 449, 544
BseXI GCAGC 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 3 cut(s) 47, 280, 427
BsiEI CGRYCG 1 cut(s) 22
BsiHKCI CYCGRG 2 cut(s) 67, 335
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 4 cut(s) 28, 139, 275, 296
BsmAI GTCTC 2 cut(s) 26, 196
BsmBI CGTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 494
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 3 cut(s) 47, 280, 427
Bso31I GGTCTC 1 cut(s) 196
BsoBI CYCGRG 2 cut(s) 67, 335
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 4 cut(s) 91, 147, 480, 492
BspACI CCGC 3 cut(s) 27, 29, 328
BspANI GGCC 3 cut(s) 47, 280, 427
BspFNI CGCG 1 cut(s) 29
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 2 cut(s) 99, 475
BspQI GCTCTTC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 196
BsrI ACTGG 5 cut(s) 41, 79, 411, 449, 544
BssECI CCNNGG 3 cut(s) 27, 175, 246
BssMI GATC 4 cut(s) 91, 147, 480, 492
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 27
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 280, 415
BstFNI CGCG 1 cut(s) 29
BstKTI GATC 4 cut(s) 94, 150, 483, 495
BstMAI GTCTC 2 cut(s) 26, 196
BstMBI GATC 4 cut(s) 91, 147, 480, 492
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 109, 286
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 2 cut(s) 174, 255
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 480
BstYI RGATCY 1 cut(s) 480
BsuRI GGCC 3 cut(s) 47, 280, 427
BtgI CCRYGG 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 158
BtsCI GGATG 2 cut(s) 280, 415
BtsI GCAGTG 1 cut(s) 284
BtsIMutI CAGTG 3 cut(s) 48, 284, 537
CciI TCATGA 1 cut(s) 387
Cfr13I GGNCC 3 cut(s) 46, 96, 278
Cfr42I CCGCGG 1 cut(s) 30
Csp6I GTAC 3 cut(s) 82, 404, 535
CviAII CATG 2 cut(s) 388, 490
CviQI GTAC 3 cut(s) 82, 404, 535
DpnI GATC 4 cut(s) 93, 149, 482, 494
DpnII GATC 4 cut(s) 91, 147, 480, 492
EaeI YGGCCR 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 2 cut(s) 67, 335
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 2 cut(s) 391, 493
FaiI YATR 7 cut(s) 171, 186, 198, 389, 439, 491, 507
FaqI GGGAC 1 cut(s) 494
FatI CATG 2 cut(s) 387, 489
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 3 cut(s) 16, 27, 328
FokI GGATG 2 cut(s) 287, 422
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 3 cut(s) 16, 27, 328
FspBI CTAG 1 cut(s) 134
GluI GCNGC 3 cut(s) 16, 27, 328
HaeIII GGCC 3 cut(s) 47, 280, 427
HapII CCGG 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 2 cut(s) 391, 493
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 2 cut(s) 9, 207
HpaII CCGG 1 cut(s) 257
HphI GGTGA 2 cut(s) 30, 234
Hpy166II GTNNAC 4 cut(s) 99, 166, 253, 537
Hpy188I TCNGA 2 cut(s) 117, 206
Hpy188III TCNNGA 6 cut(s) 67, 69, 89, 217, 226, 388
Hpy8I GTNNAC 4 cut(s) 99, 166, 253, 537
HpyAV CCTTC 2 cut(s) 291, 403
HpyCH4IV ACGT 2 cut(s) 35, 213
HpyCH4V TGCA 1 cut(s) 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 286
HpySE526I ACGT 2 cut(s) 35, 213
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 391, 493
Ksp22I TGATCA 1 cut(s) 492
KspI CCGCGG 1 cut(s) 30
Kzo9I GATC 4 cut(s) 91, 147, 480, 492
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 1 cut(s) 259
Lsp1109I GCAGC 1 cut(s) 27
MaeI CTAG 1 cut(s) 134
MaeII ACGT 2 cut(s) 35, 213
MaeIII GTNAC 1 cut(s) 36
MalI GATC 4 cut(s) 93, 149, 482, 494
MboI GATC 4 cut(s) 91, 147, 480, 492
MboII GAAGA 2 cut(s) 67, 229
MflI RGATCY 1 cut(s) 480
MhlI GDGCHC 1 cut(s) 204
MnlI CCTC 6 cut(s) 111, 114, 233, 341, 473, 525
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 2 cut(s) 176, 257
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 109, 286
NciI CCSGG 1 cut(s) 257
NdeII GATC 4 cut(s) 91, 147, 480, 492
NlaIII CATG 2 cut(s) 391, 493
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 36
PaeR7I CTCGAG 1 cut(s) 67
PagI TCATGA 1 cut(s) 387
PciSI GCTCTTC 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PctI GAATGC 1 cut(s) 74
PfeI GAWTC 2 cut(s) 9, 207
PkrI GCNGC 3 cut(s) 17, 28, 329
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 3 cut(s) 46, 96, 278
PsuI RGATCY 1 cut(s) 480
RsaI GTAC 3 cut(s) 83, 405, 536
RsaNI GTAC 3 cut(s) 82, 404, 535
SacII CCGCGG 1 cut(s) 30
SapI GCTCTTC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 3 cut(s) 16, 27, 328
Sau3AI GATC 4 cut(s) 91, 147, 480, 492
Sau96I GGNCC 3 cut(s) 46, 96, 278
ScaI AGTACT 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 176, 257
SduI GDGCHC 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 67
Sfr303I CCGCGG 1 cut(s) 30
SgrBI CCGCGG 1 cut(s) 30
SinI GGWCC 1 cut(s) 96
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SsiI CCGC 3 cut(s) 27, 29, 328
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 174, 255
StyI CCWWGG 1 cut(s) 246
TaiI ACGT 2 cut(s) 38, 216
TaqI TCGA 1 cut(s) 68
TaqII GACCGA 2 cut(s) 36, 84
TatI WGTACW 2 cut(s) 81, 403
TauI GCSGC 2 cut(s) 29, 330
TfiI GAWTC 2 cut(s) 9, 207
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 3 cut(s) 48, 291, 544
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 2 cut(s) 385, 485
TspRI CASTG 3 cut(s) 48, 291, 544
VpaK11BI GGWCC 1 cut(s) 96
XagI CCTNNNNNAGG 1 cut(s) 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 48
XhoI CTCGAG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 134
ZraI GACGTC 1 cut(s) 36
ZrmI AGTACT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.