Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000147.1

Orthogroup ID

OG0002176

Physical Location & Seq

Genomic Coordinates Reverse (-)

375391 .. 375663

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000147.1_g000085.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atggacctggaaattgaagctttggatggggctttactgcctaccaaaggttctgatgagttcaggcctttcattcgccgcctctcggagttcaagttctggtattccatcacaaaggctttcattattgcatttatcatgacctttatctttgtgttgtatgtacgtgcctgttttctggccaatattgaaatgctactggattatgctatttgtcctcacaatgaaatgacagatcctacacatgatcaaatacagatatgtcccatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rer1

Protein Analysis

90

Amino Acids

10.52

Weight (kDa)

4.74

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18240 AT2G18240
fragaria_vesca	FvH4_1g12980 FvH4_1g12980
malus_domestica	MD02G1144300.v1.1 MD12G1092000.v1.1 MD15G1257900.v1.1 MD15G1258000.v1.1
prunus_persica	Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1 Prupe.7G157300_v2.0.a1
pyrus_communis	pycom02g11420 pycom15g22550 pycom15g22560
rosa_chinensis	RchiOBHm_Chr2g0101041 RchiOBHm_Chr2g0101051 RchiOBHm_Chr6g0247461 RchiOBHm_Chr6g0301161
rosa_laevigata	RLG00000017047
rosa_multiflora	Rmu_co7998428.1_g000001 Rmu_sc0000147.1_g000085 Rmu_sc0000193.1_g000024 Rmu_sc0001862.1_g000002 Rmu_sc0002886.1_g000003 Rmu_sc0007698.1_g000016 Rmu_sc0007698.1_g000017
rosa_roxburghii	Rroxscaffold_2G00141610
rosa_rugosa	Rorug02G0096300 Rorug07G0032000
rosa_samantha	Rh2AG142700 Rh2AG142800 Rh2BG147800 Rh2BG147900 Rh2CG149100 Rh2CG149300 Rh2DG148300 Rh2DG148400 Rh4DG139700 Rh5AG160300 Rh6AG040800 Rh6BG035900
rosa_wichuraiana	Rw2G011240 Rw4G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	180
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	47, 85
AgsI	TTSAA	3 cut(s)	17, 94, 191
AjnI	CCWGG	1 cut(s)	6
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	2 cut(s)	65, 180
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	182
BccI	CCATC	2 cut(s)	20, 116
BciT130I	CCWGG	1 cut(s)	8
BclI	TGATCA	1 cut(s)	247
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 85
Bse1I	ACTGG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	47, 85
BseNI	ACTGG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	67, 182
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	47, 85
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	67, 182
Bsp143I	GATC	2 cut(s)	235, 247
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	2 cut(s)	67, 182
BspHI	TCATGA	1 cut(s)	138
BspPI	GGATC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	235, 247
Bst2UI	CCWGG	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	167
BstENI	CCTNNNNNAGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	2 cut(s)	238, 250
BstMBI	GATC	2 cut(s)	235, 247
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	67, 182
BtsCI	GGATG	1 cut(s)	31
CciI	TCATGA	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	2 cut(s)	139, 245
CviJI	RGCY	5 cut(s)	20, 32, 67, 119, 182
CviKI_1	RGCY	5 cut(s)	20, 32, 67, 119, 182
CviQI	GTAC	1 cut(s)	164
DpnI	GATC	2 cut(s)	237, 249
DpnII	GATC	2 cut(s)	235, 247
EaeI	YGGCCR	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	142, 248
FaiI	YATR	5 cut(s)	140, 162, 207, 246, 262
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	2 cut(s)	138, 244
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	67, 182
Hin1II	CATG	2 cut(s)	142, 248
HindIII	AAGCTT	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	55, 88
Hpy188III	TCNNGA	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	2 cut(s)	142, 248
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	235, 247
LpnPI	CCDG	6 cut(s)	20, 49, 85, 164, 184, 185
MaeII	ACGT	1 cut(s)	166
MalI	GATC	2 cut(s)	237, 249
MboI	GATC	2 cut(s)	235, 247
MflI	RGATCY	1 cut(s)	235
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	1 cut(s)	12
MluNI	TGGCCA	1 cut(s)	182
MnlI	CCTC	2 cut(s)	92, 228
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
NdeII	GATC	2 cut(s)	235, 247
NlaIII	CATG	2 cut(s)	142, 248
PagI	TCATGA	1 cut(s)	138
PceI	AGGCCT	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	2 cut(s)	235, 247
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	8
SetI	ASST	5 cut(s)	9, 22, 52, 146, 169
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	12
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	1 cut(s)	79
SspI	AATATT	1 cut(s)	187
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	6
TaiI	ACGT	1 cut(s)	169
TasI	AATT	1 cut(s)	12
TauI	GCSGC	1 cut(s)	81
TspDTI	ATGAA	3 cut(s)	61, 112, 240
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.