AT2G18560

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
8059106 .. 8061073
1968 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18560.1

Sequence Viewer

Length: 1143 bp
ATGCGAGAAATGAAGTCCACGGTTCGTGATGCCGTGAAATCAATGAAGCAAAAACCGACGGTCATGATTGTTGACTTTTTTGGTACAGCGTTGTTGTCCATAACCGATGTAGGTGTGACGAGTAAGTATGTGTACATACCGTCTCACGCGTGGTTCTTGGCATTAATTGTCTACTTGCCGGTATTGGATAAGGTAATGGAAGGTGAGTATGTTGATATTAAGGAGCCTATGAAAATACCAGGTTGTAAACCGGTCGGACCAAAAGAGCTTTTGGACACAATGTTAGACCGGTCCGACCAACAATACCGTGATTGTGTACAGATTGGGTTGGAGATACCTATGAGCGATGGAGTTTTGGTAAATACTTGGGGGGAGTTACAAGGGAAGACTCTAGCTGCGCTAAGAGAGGACATAGATTTGAACCGGGTTATAAAAGTACCGGTTTATCCTATTGGACCTATTGTTAGGACTAATGTGCTTATTGAAAAACCAAACAGTACATTCGAGTGGCTAGACAAACAAGAGGAAAGATCTGTTGTATATGTGTGTTTAGGGAGTGGTGGAACATTGTCGTTTGAGCAAACGATGGAACTAGCTTGGGGGTTAGAGTTAAGTTGTCAAAGTTTCTTATGGGTTCTACGTAAGCCTCCTTCTTACCTTGGAGCAAGCTCAAAAGATGATGATCAAGTAAGTGACGGTCTACCAGAAGGTTTCTTGGACCGCACACGTGGTGTAGGGCTTGTGGTAACGCAATGGGCACCGCAAGTTGAGATCTTAAGCCATAGATCAATCGGTGGGTTTTTGTCACATTGTGGTTGGAGCTCGGTGTTGGAGAGTTTAACTAAAGGAGTTCCGATCATCGCTTGGCCTCTTTATGCGGAGCAATGGATGAATGCCACGTTGCTGACGGAGGAGATTGGTATGGCTATTCGTACGTCAGAGTTACCGTCGAAGAAAGTGATCAGCCGGGAAGAAGTGGCGTCTTTGGTGAAGAAGATTGTAGCGGAAGAGGATAAAGAAGGACGAAAGATAAAGACTAAAGCTGAAGAGGTGAGGGTTAGCTCCGAACGAGCTTGGACTCATGGTGGGTCGTCTCATAGTTCTCTCTTTGAATGGGCAAAACGATGTGGGCTTGTATCTTAA

Protein Analysis

380

Amino Acids

42.42

Weight (kDa)

5.61

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 157 - 336 5.6e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AccB1I GGYRCC 1 cut(s) 757
AccI GTMKAC 2 cut(s) 171, 700
AccII CGCG 1 cut(s) 149
AciI CCGC 4 cut(s) 721, 761, 878, 1004
AcuI CTGAAG 1 cut(s) 1065
AcvI CACGTG 1 cut(s) 728
AcyI GRCGYC 1 cut(s) 980
AdeI CACNNNGTG 2 cut(s) 731, 812
AfaI GTAC 6 cut(s) 85, 134, 318, 438, 499, 934
AflII CTTAAG 1 cut(s) 775
AflIII ACRYGT 2 cut(s) 147, 725
AgeI ACCGGT 3 cut(s) 250, 288, 439
AgsI TTSAA 3 cut(s) 421, 485, 1112
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 8 cut(s) 268, 395, 596, 669, 822, 1043, 1062, 1073
AluI AGCT 8 cut(s) 268, 395, 596, 669, 822, 1043, 1062, 1073
Alw21I GWGCWC 1 cut(s) 824
Alw26I GTCTC 2 cut(s) 147, 1098
AoxI GGCC 1 cut(s) 866
ApeKI GCWGC 1 cut(s) 395
AseI ATTAAT 1 cut(s) 164
AsiGI ACCGGT 3 cut(s) 250, 288, 439
AspLEI GCGC 1 cut(s) 400
AspS9I GGNCC 4 cut(s) 257, 291, 455, 718
AsuC2I CCSGG 2 cut(s) 425, 968
AsuHPI GGTGA 3 cut(s) 215, 1000, 1063
AvaII GGWCC 4 cut(s) 257, 291, 455, 718
BaeGI GKGCMC 1 cut(s) 760
BanI GGYRCC 1 cut(s) 757
BanII GRGCYC 1 cut(s) 824
BarI GAAGNNNNNNTAC 2 cut(s) 634, 666
BbrPI CACGTG 1 cut(s) 728
BbsI GAAGAC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 824
BbvI GCAGC 1 cut(s) 382
BccI CCATC 2 cut(s) 341, 580
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 240
BclI TGATCA 2 cut(s) 682, 960
BcnI CCSGG 2 cut(s) 425, 968
BcoDI GTCTC 2 cut(s) 147, 1098
BfaI CTAG 3 cut(s) 392, 512, 593
BfrI CTTAAG 1 cut(s) 775
BglII AGATCT 2 cut(s) 530, 771
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
Bme1390I CCNGG 3 cut(s) 240, 425, 968
Bme18I GGWCC 4 cut(s) 257, 291, 455, 718
BmgT120I GGNCC 4 cut(s) 257, 291, 455, 718
BmiI GGNNCC 2 cut(s) 225, 759
BmrFI CCNGG 3 cut(s) 240, 425, 968
BmsI GCATC 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 392
BpuMI CCSGG 2 cut(s) 425, 968
BsaAI YACGTR 2 cut(s) 641, 728
BsaBI GATNNNNATC 1 cut(s) 681
BsaHI GRCGYC 1 cut(s) 980
BsaJI CCNNGG 2 cut(s) 18, 658
BsaWI WCCGGW 3 cut(s) 250, 288, 439
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bse118I RCCGGY 4 cut(s) 178, 250, 288, 439
Bse3DI GCAATG 2 cut(s) 758, 890
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 18, 658
BseGI GGATG 1 cut(s) 894
BseJI GATNNNNATC 1 cut(s) 681
BseMI GCAATG 2 cut(s) 758, 890
BseRI GAGGAG 1 cut(s) 926
BseSI GKGCMC 1 cut(s) 760
BseXI GCAGC 1 cut(s) 382
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 1 cut(s) 868
BshNI GGYRCC 1 cut(s) 757
BshTI ACCGGT 3 cut(s) 250, 288, 439
BsiEI CGRYCG 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 824
BsiSI CCGG 6 cut(s) 179, 251, 289, 424, 440, 967
BsiWI CGTACG 1 cut(s) 932
BsmAI GTCTC 2 cut(s) 147, 1098
BsmBI CGTCTC 2 cut(s) 147, 1098
BsmI GAATGC 1 cut(s) 898
BsnI GGCC 1 cut(s) 868
Bsp1286I GDGCHC 2 cut(s) 760, 824
Bsp1407I TGTACA 2 cut(s) 132, 316
Bsp143I GATC 6 cut(s) 530, 682, 771, 785, 855, 960
BspACI CCGC 4 cut(s) 721, 761, 878, 1004
BspANI GGCC 1 cut(s) 868
BspFNI CGCG 1 cut(s) 149
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 225, 759
BspT107I GGYRCC 1 cut(s) 757
BspTI CTTAAG 1 cut(s) 775
BsrDI GCAATG 2 cut(s) 758, 890
BsrFI RCCGGY 4 cut(s) 178, 250, 288, 439
BsrGI TGTACA 2 cut(s) 132, 316
BssAI RCCGGY 4 cut(s) 178, 250, 288, 439
BssECI CCNNGG 2 cut(s) 18, 658
BssMI GATC 6 cut(s) 530, 682, 771, 785, 855, 960
BssNI GRCGYC 1 cut(s) 980
BssT1I CCWWGG 1 cut(s) 658
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 7 cut(s) 22, 61, 141, 308, 497, 698, 948
Bst6I CTCTTC 2 cut(s) 1002, 1041
BstACI GRCGYC 1 cut(s) 980
BstAFI CTTAAG 1 cut(s) 775
BstAUI TGTACA 2 cut(s) 132, 316
BstBAI YACGTR 2 cut(s) 641, 728
BstC8I GCNNGC 1 cut(s) 667
BstDEI CTNAG 1 cut(s) 401
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 894
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 6 cut(s) 533, 685, 774, 788, 858, 963
BstMAI GTCTC 2 cut(s) 147, 1098
BstMBI GATC 6 cut(s) 530, 682, 771, 785, 855, 960
BstMCI CGRYCG 1 cut(s) 255
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 3 cut(s) 238, 423, 966
BstSLI GKGCMC 1 cut(s) 760
BstSNI TACGTA 1 cut(s) 641
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 382
BstV2I GAAGAC 1 cut(s) 392
BstX2I RGATCY 2 cut(s) 530, 771
BstYI RGATCY 2 cut(s) 530, 771
BsuRI GGCC 1 cut(s) 868
BtgI CCRYGG 1 cut(s) 18
BtgZI GCGATG 2 cut(s) 360, 844
BtsCI GGATG 1 cut(s) 894
Cac8I GCNNGC 1 cut(s) 667
CciI TCATGA 1 cut(s) 63
CfoI GCGC 1 cut(s) 400
Cfr10I RCCGGY 4 cut(s) 178, 250, 288, 439
Cfr13I GGNCC 4 cut(s) 257, 291, 455, 718
CpoI CGGWCCG 1 cut(s) 291
CseI GACGC 1 cut(s) 969
CsiI ACCWGGT 1 cut(s) 238
Csp6I GTAC 6 cut(s) 84, 133, 317, 437, 498, 933
CspAI ACCGGT 3 cut(s) 250, 288, 439
CspI CGGWCCG 1 cut(s) 291
CviAII CATG 2 cut(s) 64, 1082
CviQI GTAC 6 cut(s) 84, 133, 317, 437, 498, 933
DdeI CTNAG 1 cut(s) 401
DpnI GATC 6 cut(s) 532, 684, 773, 787, 857, 962
DpnII GATC 6 cut(s) 530, 682, 771, 785, 855, 960
DraIII CACNNNGTG 2 cut(s) 731, 812
Eam1104I CTCTTC 2 cut(s) 1002, 1041
EarI CTCTTC 2 cut(s) 1002, 1041
Ecl136II GAGCTC 1 cut(s) 822
Eco105I TACGTA 1 cut(s) 641
Eco130I CCWWGG 1 cut(s) 658
Eco24I GRGCYC 1 cut(s) 824
Eco47I GGWCC 4 cut(s) 257, 291, 455, 718
Eco53kI GAGCTC 1 cut(s) 822
Eco57I CTGAAG 1 cut(s) 1065
Eco72I CACGTG 1 cut(s) 728
EcoICRI GAGCTC 1 cut(s) 822
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 658
EcoT38I GRGCYC 1 cut(s) 824
ErhI CCWWGG 1 cut(s) 658
Esp3I CGTCTC 2 cut(s) 147, 1098
FaeI CATG 2 cut(s) 67, 1085
FatI CATG 2 cut(s) 63, 1081
FbaI TGATCA 2 cut(s) 682, 960
FblI GTMKAC 2 cut(s) 171, 700
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 1 cut(s) 901
FriOI GRGCYC 1 cut(s) 824
Fsp4HI GCNGC 1 cut(s) 396
FspBI CTAG 3 cut(s) 392, 512, 593
GlaI GCGC 1 cut(s) 399
GluI GCNGC 1 cut(s) 396
HaeIII GGCC 1 cut(s) 868
HapII CCGG 6 cut(s) 179, 251, 289, 424, 440, 967
HgaI GACGC 1 cut(s) 969
HhaI GCGC 1 cut(s) 400
Hin1I GRCGYC 1 cut(s) 980
Hin1II CATG 2 cut(s) 67, 1085
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 2 cut(s) 388, 1078
HpaII CCGG 6 cut(s) 179, 251, 289, 424, 440, 967
HphI GGTGA 3 cut(s) 215, 1000, 1063
Hpy166II GTNNAC 7 cut(s) 18, 73, 133, 172, 248, 317, 701
Hpy188I TCNGA 5 cut(s) 257, 295, 855, 940, 1066
Hpy188III TCNNGA 2 cut(s) 26, 64
Hpy8I GTNNAC 7 cut(s) 18, 73, 133, 172, 248, 317, 701
Hpy99I CGWCG 2 cut(s) 61, 952
HpyAV CCTTC 4 cut(s) 194, 660, 701, 1013
HpyCH4III ACNGT 7 cut(s) 22, 61, 141, 308, 497, 698, 948
HpyCH4IV ACGT 4 cut(s) 640, 727, 899, 935
HpyF3I CTNAG 1 cut(s) 401
HpySE526I ACGT 4 cut(s) 640, 727, 899, 935
Hsp92I GRCGYC 1 cut(s) 980
Hsp92II CATG 2 cut(s) 67, 1085
HspAI GCGC 1 cut(s) 398
Ksp22I TGATCA 2 cut(s) 682, 960
Kzo9I GATC 6 cut(s) 530, 682, 771, 785, 855, 960
LmnI GCTCC 5 cut(s) 223, 662, 819, 880, 1067
LpnPI CCDG 9 cut(s) 192, 225, 252, 264, 302, 437, 453, 717, 980
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 1 cut(s) 19
MabI ACCWGGT 1 cut(s) 238
MaeI CTAG 3 cut(s) 392, 512, 593
MaeII ACGT 4 cut(s) 640, 727, 899, 935
MaeIII GTNAC 6 cut(s) 115, 375, 692, 745, 804, 942
MalI GATC 6 cut(s) 532, 684, 773, 787, 857, 962
MboI GATC 6 cut(s) 530, 682, 771, 785, 855, 960
MboII GAAGA 7 cut(s) 397, 964, 983, 1003, 1006, 1019, 1058
MflI RGATCY 2 cut(s) 530, 771
MhlI GDGCHC 2 cut(s) 760, 824
MluCI AATT 1 cut(s) 165
MluI ACGCGT 1 cut(s) 147
MlyI GAGTC 2 cut(s) 382, 1072
MmeI TCCRAC 5 cut(s) 235, 309, 318, 797, 810
MnlI CCTC 8 cut(s) 400, 517, 657, 879, 904, 1003, 1042, 1047
MseI TTAA 6 cut(s) 164, 219, 611, 776, 839, 1141
MslI CAYNNNNRTG 1 cut(s) 505
MspCI CTTAAG 1 cut(s) 775
MspI CCGG 6 cut(s) 179, 251, 289, 424, 440, 967
MspR9I CCNGG 3 cut(s) 240, 425, 968
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 1 cut(s) 240
MvnI CGCG 1 cut(s) 149
NciI CCSGG 2 cut(s) 425, 968
NdeII GATC 6 cut(s) 530, 682, 771, 785, 855, 960
NlaIII CATG 2 cut(s) 67, 1085
NlaIV GGNNCC 2 cut(s) 225, 759
NmuCI GTSAC 3 cut(s) 115, 692, 804
PagI TCATGA 1 cut(s) 63
PctI GAATGC 1 cut(s) 898
Pfl23II CGTACG 1 cut(s) 932
PinAI ACCGGT 3 cut(s) 250, 288, 439
PkrI GCNGC 1 cut(s) 397
PleI GAGTC 2 cut(s) 382, 1072
PmaCI CACGTG 1 cut(s) 728
PmlI CACGTG 1 cut(s) 728
PpsI GAGTC 2 cut(s) 382, 1072
Ppu21I YACGTR 2 cut(s) 641, 728
PshBI ATTAAT 1 cut(s) 164
PsiI TTATAA 1 cut(s) 431
Psp124BI GAGCTC 1 cut(s) 824
Psp6I CCWGG 1 cut(s) 238
PspCI CACGTG 1 cut(s) 728
PspGI CCWGG 1 cut(s) 238
PspLI CGTACG 1 cut(s) 932
PspN4I GGNNCC 2 cut(s) 225, 759
PspPI GGNCC 4 cut(s) 257, 291, 455, 718
PsuI RGATCY 2 cut(s) 530, 771
RsaI GTAC 6 cut(s) 85, 134, 318, 438, 499, 934
RsaNI GTAC 6 cut(s) 84, 133, 317, 437, 498, 933
RseI CAYNNNNRTG 1 cut(s) 505
Rsr2I CGGWCCG 1 cut(s) 291
RsrII CGGWCCG 1 cut(s) 291
SacI GAGCTC 1 cut(s) 824
SaqAI TTAA 6 cut(s) 164, 219, 611, 776, 839, 1141
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 6 cut(s) 530, 682, 771, 785, 855, 960
Sau96I GGNCC 4 cut(s) 257, 291, 455, 718
SchI GAGTC 2 cut(s) 382, 1072
ScrFI CCNGG 3 cut(s) 240, 425, 968
SduI GDGCHC 2 cut(s) 760, 824
SexAI ACCWGGT 1 cut(s) 238
SfaNI GCATC 1 cut(s) 19
SinI GGWCC 4 cut(s) 257, 291, 455, 718
SmiMI CAYNNNNRTG 1 cut(s) 505
SmlI CTYRAG 1 cut(s) 775
SmoI CTYRAG 1 cut(s) 775
SnaBI TACGTA 1 cut(s) 641
Sse9I AATT 1 cut(s) 165
SsiI CCGC 4 cut(s) 721, 761, 878, 1004
SspMI CTAG 3 cut(s) 392, 512, 593
SstI GAGCTC 1 cut(s) 824
StyD4I CCNGG 3 cut(s) 238, 423, 966
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 7 cut(s) 22, 61, 141, 308, 497, 698, 948
TaiI ACGT 4 cut(s) 643, 730, 902, 938
TaqI TCGA 2 cut(s) 504, 950
TasI AATT 1 cut(s) 165
TatI WGTACW 3 cut(s) 132, 316, 497
Tru1I TTAA 6 cut(s) 164, 219, 611, 776, 839, 1141
Tru9I TTAA 6 cut(s) 164, 219, 611, 776, 839, 1141
TseFI GTSAC 3 cut(s) 115, 692, 804
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 3 cut(s) 115, 692, 804
TspDTI ATGAA 4 cut(s) 26, 59, 245, 905
TspGWI ACGGA 1 cut(s) 923
Vha464I CTTAAG 1 cut(s) 775
VpaK11BI GGWCC 4 cut(s) 257, 291, 455, 718
VspI ATTAAT 1 cut(s) 164
XmiI GTMKAC 2 cut(s) 171, 700
XspI CTAG 3 cut(s) 392, 512, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.