Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

13937533 .. 13938417

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG161400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAGATCACAAACCAACATGCTGCACTACTCTGCAGCCCAGGTATGGGCCATATCATCCCTGTCCTTGAGCTCGGGAAACGACTCGTCACCCACCAAAACTTCACTGTCACAATCTTCGTCGTCCCATTGCACACTTCCAAGGCTGAATATGAACTCCTCGATGCATCTGCCTTCCCACGTAGTCTGGACATCATCAAGCTCCCATCACCTGATGTTTCTGGCCTTGTCGAACCTGATGCTGTCGTCGTCACACGCCTCGCAGAAATGATGCGACAAGTACGACCCACGTTTCGTGCCGCCTTACATGACATGATCAACTTTCGTCATCGGTGCCCCACCATGCTCATCGTGGACCTATTCGGCACCGAATCTTTGCCCATTGCCGAGGAGTTTGGGATTCCAAAGTATGTGTACATTGCTTCCAATGCATGGTTCCTTTCTGTAATGATTTATTCTCCAACACTAGATGAGCAAGTCAAGGGTAAATTTGTTGACCTCAAAGATCCACTAGAAATTCCTGGATGTAGAAAATTATTCCCAGAACTTGATATAGTTGATGCTTTGCTGGACTGGAGTAATCAGCAATATGACGAGCACATGCTGATGGGAAGAGGAATCCCAAAGGGTGATGGAATTTTGATAAACATATGGGAAGAATTGGAGCCCAAGTCTCTAGCAGCACTAAGAGATGAGAACTTTTTGGGCCGATTTGTGAAAGTGCCGATCTTTCCAATTGGGCCATTGATGAGGCCCAATGTGTCTTCCATCCCGAGGGGTGATGTGTTTGATTGGCTAGATAAGCAACCTAATGAAACTGTGATTTACGTGTCCTTTGGAAGCGGTGGGGTCCTGTCGTATGAACAAATGGTCGAGCTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

294

Amino Acids

33.06

Weight (kDa)

5.04

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	333, 365
AccB7I	CCANNNNNTGG	1 cut(s)	432
AciI	CCGC	2 cut(s)	300, 843
AclWI	GGATC	1 cut(s)	500
AcsI	RAATTY	3 cut(s)	488, 516, 636
AfaI	GTAC	2 cut(s)	282, 416
AfiI	CCNNNNNNNGG	4 cut(s)	46, 47, 432, 774
AflIII	ACRYGT	1 cut(s)	828
AjnI	CCWGG	2 cut(s)	40, 520
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	4 cut(s)	73, 202, 877, 881
AluI	AGCT	4 cut(s)	73, 202, 877, 881
Alw21I	GWGCWC	2 cut(s)	75, 600
Alw26I	GTCTC	1 cut(s)	678
AlwI	GGATC	1 cut(s)	500
Ama87I	CYCGRG	2 cut(s)	74, 772
AoxI	GGCC	5 cut(s)	49, 223, 706, 740, 752
ApeKI	GCWGC	3 cut(s)	23, 36, 680
ApoI	RAATTY	3 cut(s)	488, 516, 636
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
AspS9I	GGNCC	6 cut(s)	49, 355, 706, 740, 753, 850
AsuHPI	GGTGA	4 cut(s)	82, 201, 641, 791
AsuNHI	GCTAGC	1 cut(s)	877
AvaI	CYCGRG	2 cut(s)	74, 772
AvaII	GGWCC	2 cut(s)	355, 850
BaeGI	GKGCMC	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	333, 365
BanII	GRGCYC	2 cut(s)	75, 669
BbsI	GAAGAC	1 cut(s)	756
Bbv12I	GWGCWC	2 cut(s)	75, 600
BbvI	GCAGC	3 cut(s)	10, 48, 692
BccI	CCATC	4 cut(s)	214, 601, 626, 776
BcgI	CGANNNNNNTGC	4 cut(s)	152, 186, 221, 255
BciT130I	CCWGG	2 cut(s)	42, 522
BclI	TGATCA	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	678
BfaI	CTAG	5 cut(s)	467, 512, 677, 797, 878
BfmI	CTRYAG	1 cut(s)	34
BisI	GCNGC	4 cut(s)	24, 37, 300, 681
BlsI	GCNGC	4 cut(s)	25, 38, 301, 682
Bme1390I	CCNGG	2 cut(s)	42, 522
Bme18I	GGWCC	2 cut(s)	355, 850
BmeT110I	CYCGRG	2 cut(s)	74, 772
BmgT120I	GGNCC	6 cut(s)	49, 355, 706, 740, 753, 850
BmiI	GGNNCC	5 cut(s)	335, 367, 437, 666, 851
BmrFI	CCNGG	2 cut(s)	42, 522
BmsI	GCATC	5 cut(s)	154, 176, 229, 261, 550
BmtI	GCTAGC	1 cut(s)	881
BpiI	GAAGAC	1 cut(s)	756
BpmI	CTGGAG	1 cut(s)	595
BpuEI	CTTGAG	1 cut(s)	89
BsaAI	YACGTR	2 cut(s)	182, 829
BsaJI	CCNNGG	4 cut(s)	40, 141, 387, 773
BsaXI	ACNNNNNCTCC	2 cut(s)	656, 686
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 47, 432, 774
Bse1I	ACTGG	1 cut(s)	578
Bse3DI	GCAATG	3 cut(s)	128, 381, 417
BseBI	CCWGG	2 cut(s)	42, 522
BseDI	CCNNGG	4 cut(s)	40, 141, 387, 773
BseGI	GGATG	3 cut(s)	57, 530, 768
BseLI	CCNNNNNNNGG	4 cut(s)	46, 47, 432, 774
BseMI	GCAATG	3 cut(s)	128, 381, 417
BseNI	ACTGG	1 cut(s)	578
BseRI	GAGGAG	2 cut(s)	149, 404
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	3 cut(s)	10, 48, 692
BsgI	GTGCAG	1 cut(s)	9
BshFI	GGCC	5 cut(s)	51, 225, 708, 742, 754
BshNI	GGYRCC	2 cut(s)	333, 365
BsiHKAI	GWGCWC	2 cut(s)	75, 600
BsiHKCI	CYCGRG	2 cut(s)	74, 772
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	4 cut(s)	46, 47, 432, 774
BsmAI	GTCTC	1 cut(s)	678
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	5 cut(s)	51, 225, 708, 742, 754
BsoBI	CYCGRG	2 cut(s)	74, 772
Bsp1286I	GDGCHC	4 cut(s)	75, 338, 600, 669
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	6, 315, 505, 726
BspACI	CCGC	2 cut(s)	300, 843
BspANI	GGCC	5 cut(s)	51, 225, 708, 742, 754
BspLI	GGNNCC	5 cut(s)	335, 367, 437, 666, 851
BspMAI	CTGCAG	1 cut(s)	38
BspOI	GCTAGC	1 cut(s)	881
BspPI	GGATC	1 cut(s)	500
BspT107I	GGYRCC	2 cut(s)	333, 365
BsrDI	GCAATG	3 cut(s)	128, 381, 417
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	578
BssECI	CCNNGG	4 cut(s)	40, 141, 387, 773
BssMI	GATC	4 cut(s)	6, 315, 505, 726
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	42, 522
Bst4CI	ACNGT	2 cut(s)	109, 820
Bst6I	CTCTTC	1 cut(s)	607
BstAUI	TGTACA	1 cut(s)	414
BstBAI	YACGTR	2 cut(s)	182, 829
BstC8I	GCNNGC	1 cut(s)	879
BstDEI	CTNAG	2 cut(s)	686, 882
BstF5I	GGATG	3 cut(s)	57, 530, 768
BstKTI	GATC	4 cut(s)	9, 318, 508, 729
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	4 cut(s)	6, 315, 505, 726
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 802
BstNI	CCWGG	2 cut(s)	42, 522
BstNSI	RCATGY	2 cut(s)	23, 604
BstSCI	CCNGG	2 cut(s)	40, 520
BstSFI	CTRYAG	1 cut(s)	34
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	3 cut(s)	10, 48, 692
BstV2I	GAAGAC	1 cut(s)	756
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	5 cut(s)	51, 225, 708, 742, 754
BtsCI	GGATG	3 cut(s)	57, 530, 768
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	879
Cfr13I	GGNCC	6 cut(s)	49, 355, 706, 740, 753, 850
Csp6I	GTAC	2 cut(s)	281, 415
CviAII	CATG	6 cut(s)	20, 308, 313, 343, 432, 601
CviQI	GTAC	2 cut(s)	281, 415
DdeI	CTNAG	2 cut(s)	686, 882
DpnI	GATC	4 cut(s)	8, 317, 507, 728
DpnII	GATC	4 cut(s)	6, 315, 505, 726
Eam1104I	CTCTTC	1 cut(s)	607
EarI	CTCTTC	1 cut(s)	607
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	2 cut(s)	75, 669
Eco47I	GGWCC	2 cut(s)	355, 850
Eco53kI	GAGCTC	1 cut(s)	73
Eco88I	CYCGRG	2 cut(s)	74, 772
EcoICRI	GAGCTC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	850
EcoRII	CCWGG	2 cut(s)	40, 520
EcoT14I	CCWWGG	1 cut(s)	141
EcoT22I	ATGCAT	2 cut(s)	169, 433
EcoT38I	GRGCYC	2 cut(s)	75, 669
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	6 cut(s)	23, 311, 316, 346, 435, 604
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	6 cut(s)	19, 307, 312, 342, 431, 600
FauNDI	CATATG	1 cut(s)	650
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	4 cut(s)	24, 37, 300, 681
FokI	GGATG	3 cut(s)	44, 537, 755
FriOI	GRGCYC	2 cut(s)	75, 669
Fsp4HI	GCNGC	4 cut(s)	24, 37, 300, 681
FspBI	CTAG	5 cut(s)	467, 512, 677, 797, 878
GluI	GCNGC	4 cut(s)	24, 37, 300, 681
GsuI	CTGGAG	1 cut(s)	595
HaeIII	GGCC	5 cut(s)	51, 225, 708, 742, 754
Hin1II	CATG	6 cut(s)	23, 311, 316, 346, 435, 604
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	4 cut(s)	84, 371, 400, 618
HphI	GGTGA	4 cut(s)	82, 201, 641, 791
Hpy166II	GTNNAC	3 cut(s)	355, 415, 496
Hpy188III	TCNNGA	3 cut(s)	76, 188, 772
Hpy8I	GTNNAC	3 cut(s)	355, 415, 496
Hpy99I	CGWCG	2 cut(s)	125, 251
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	2 cut(s)	109, 820
HpyCH4IV	ACGT	3 cut(s)	181, 290, 828
HpyCH4V	TGCA	5 cut(s)	26, 36, 133, 167, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 802
HpyF3I	CTNAG	2 cut(s)	686, 882
HpySE526I	ACGT	3 cut(s)	181, 290, 828
Hsp92II	CATG	6 cut(s)	23, 311, 316, 346, 435, 604
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	4 cut(s)	6, 315, 505, 726
LmnI	GCTCC	2 cut(s)	207, 664
Lsp1109I	GCAGC	3 cut(s)	10, 48, 692
LweI	GCATC	5 cut(s)	154, 176, 229, 261, 550
MaeI	CTAG	5 cut(s)	467, 512, 677, 797, 878
MaeII	ACGT	3 cut(s)	181, 290, 828
MaeIII	GTNAC	3 cut(s)	88, 109, 250
MalI	GATC	4 cut(s)	8, 317, 507, 728
MboI	GATC	4 cut(s)	6, 315, 505, 726
MboII	GAAGA	4 cut(s)	109, 624, 668, 756
MfeI	CAATTG	1 cut(s)	735
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	4 cut(s)	75, 338, 600, 669
MluCI	AATT	6 cut(s)	488, 516, 533, 636, 659, 735
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	7 cut(s)	170, 269, 382, 509, 608, 744, 768
Mph1103I	ATGCAT	2 cut(s)	169, 433
MslI	CAYNNNNRTG	1 cut(s)	605
MspR9I	CCNGG	2 cut(s)	42, 522
MunI	CAATTG	1 cut(s)	735
MvaI	CCWGG	2 cut(s)	42, 522
MwoI	GCNNNNNNNGC	2 cut(s)	428, 802
NdeI	CATATG	1 cut(s)	650
NdeII	GATC	4 cut(s)	6, 315, 505, 726
NheI	GCTAGC	1 cut(s)	877
NlaIII	CATG	6 cut(s)	23, 311, 316, 346, 435, 604
NlaIV	GGNNCC	5 cut(s)	335, 367, 437, 666, 851
NmeAIII	GCCGAG	1 cut(s)	412
NmuCI	GTSAC	3 cut(s)	88, 109, 250
NsiI	ATGCAT	2 cut(s)	169, 433
NspI	RCATGY	2 cut(s)	23, 604
PfeI	GAWTC	3 cut(s)	371, 400, 618
PflMI	CCANNNNNTGG	1 cut(s)	432
PfoI	TCCNGGA	1 cut(s)	520
PkrI	GCNGC	4 cut(s)	25, 38, 301, 682
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Ppu21I	YACGTR	2 cut(s)	182, 829
PpuMI	RGGWCCY	1 cut(s)	850
Psp124BI	GAGCTC	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	850
Psp6I	CCWGG	2 cut(s)	40, 520
PspGI	CCWGG	2 cut(s)	40, 520
PspN4I	GGNNCC	5 cut(s)	335, 367, 437, 666, 851
PspPI	GGNCC	6 cut(s)	49, 355, 706, 740, 753, 850
PspPPI	RGGWCCY	1 cut(s)	850
PstI	CTGCAG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	2 cut(s)	282, 416
RsaNI	GTAC	2 cut(s)	281, 415
RseI	CAYNNNNRTG	1 cut(s)	605
SacI	GAGCTC	1 cut(s)	75
SatI	GCNGC	4 cut(s)	24, 37, 300, 681
Sau3AI	GATC	4 cut(s)	6, 315, 505, 726
Sau96I	GGNCC	6 cut(s)	49, 355, 706, 740, 753, 850
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	42, 522
SduI	GDGCHC	4 cut(s)	75, 338, 600, 669
SfaNI	GCATC	5 cut(s)	154, 176, 229, 261, 550
SfcI	CTRYAG	1 cut(s)	34
SinI	GGWCC	2 cut(s)	355, 850
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	6 cut(s)	488, 516, 533, 636, 659, 735
SsiI	CCGC	2 cut(s)	300, 843
SspMI	CTAG	5 cut(s)	467, 512, 677, 797, 878
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	40, 520
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	109, 820
TaiI	ACGT	3 cut(s)	184, 293, 831
TaqI	TCGA	3 cut(s)	162, 231, 873
TasI	AATT	6 cut(s)	488, 516, 533, 636, 659, 735
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	3 cut(s)	371, 400, 618
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	3 cut(s)	88, 109, 250
TseI	GCWGC	3 cut(s)	23, 36, 680
Tsp45I	GTSAC	3 cut(s)	88, 109, 250
TspDTI	ATGAA	3 cut(s)	168, 828, 876
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	432
VpaK11BI	GGWCC	2 cut(s)	355, 850
XapI	RAATTY	3 cut(s)	488, 516, 636
XceI	RCATGY	2 cut(s)	23, 604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XspI	CTAG	5 cut(s)	467, 512, 677, 797, 878
Zsp2I	ATGCAT	2 cut(s)	169, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.