Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

9133541 .. 9134813

Gene Structure 1273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0106900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCCGCTGAATTCGTTGATCTTACCGACGACTCTCCTCCGGCTAGCCCGAAGACCCCCAGACCCACCTCCCGAACATCAGCTGGTTCTCCTTCTGCCCCGGCTGTGATGCAAAACCTGCACCAGCCTCGGCCTAGTCCAGAACAACAACCTCAGCCTCTTCCCAAAAGGCTGCGAATCTCTGGTGAACCGGCCATGGAGCCCCGAAATCCCAACCAATCAACACCGGGTCAGCTTCGCCTCGTGAGAAGCTCTTCTGAGAATTACATCATCGGATCGGGAACAAAACCCATGCATGTTCAACTATTATCGACTACGCGGGACCTTGTCCAAGGTTCAGTTAACCGAGGCAGAGCATATATTATTAATGCGTCAGACACTCAGATGTGTTCCTCAAACCCGAATAAGCCGGTGAACTGTATGGCTCGTGCAAACAATTCCGGCTCATCGTCAAGCTCAAAGACGCCCGTGGATGTGGCTTATCAGGCTCCCCTTGCGTCAGATCCTCCTATATCAGCTCCTGTTGTGTCTGCTCCTCCTGTGCGGGTTTCTCTTGCGTCAGTTCCACCTGTACCGGCTCCTTCTGTGCTATCTTCTCCTATTTCTCTTGAAAATATAAGGACAGAATGTGTTTTCTGGAAAATGGGAATTGCAAGGCACGTATCAATTCTTACTGGGCAGAAATCAAAAATATCAAACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

234

Amino Acids

24.87

Weight (kDa)

10.09

Isoelectric Point (pI)

70.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	126
AccII	CGCG	1 cut(s)	319
AciI	CCGC	3 cut(s)	6, 319, 544
AclWI	GGATC	2 cut(s)	283, 497
AcoI	YGGCCR	2 cut(s)	3, 192
AcsI	RAATTY	1 cut(s)	11
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	1 cut(s)	573
AgsI	TTSAA	2 cut(s)	302, 611
AluBI	AGCT	5 cut(s)	83, 235, 252, 456, 518
AluI	AGCT	5 cut(s)	83, 235, 252, 456, 518
AlwI	GGATC	2 cut(s)	283, 497
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	3 cut(s)	3, 131, 192
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	11
AseI	ATTAAT	1 cut(s)	366
Asp700I	GAANNNNTTC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	2 cut(s)	101, 228
AsuHPI	GGTGA	2 cut(s)	197, 424
AsuNHI	GCTAGC	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	204
BauI	CACGAG	2 cut(s)	242, 426
BbsI	GAAGAC	1 cut(s)	59
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BcnI	CCSGG	2 cut(s)	101, 228
BfaI	CTAG	2 cut(s)	45, 135
BfuAI	ACCTGC	1 cut(s)	126
BisI	GCNGC	2 cut(s)	6, 173
BlsI	GCNGC	2 cut(s)	7, 174
Bme1390I	CCNGG	2 cut(s)	101, 228
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	4 cut(s)	201, 323, 489, 579
BmrFI	CCNGG	2 cut(s)	101, 228
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	1 cut(s)	99
BmtI	GCTAGC	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	684
BpiI	GAAGAC	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	153
BpuMI	CCSGG	2 cut(s)	101, 228
BsaAI	YACGTR	1 cut(s)	661
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	6 cut(s)	99, 128, 195, 331, 346, 468
Bse118I	RCCGGY	3 cut(s)	190, 409, 574
Bse1I	ACTGG	1 cut(s)	679
BseDI	CCNNGG	6 cut(s)	99, 128, 195, 331, 346, 468
BseGI	GGATG	1 cut(s)	478
BseMII	CTCAG	3 cut(s)	167, 249, 395
BseNI	ACTGG	1 cut(s)	679
BseRI	GAGGAG	2 cut(s)	27, 525
BseXI	GCAGC	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	319
BshFI	GGCC	3 cut(s)	5, 133, 194
BsiSI	CCGG	7 cut(s)	41, 101, 191, 227, 410, 441, 575
BslFI	GGGAC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	3 cut(s)	5, 133, 194
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	19, 275, 502
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	3 cut(s)	6, 319, 544
BspANI	GGCC	3 cut(s)	5, 133, 194
BspCNI	CTCAG	3 cut(s)	166, 250, 394
BspFNI	CGCG	1 cut(s)	319
BspLI	GGNNCC	4 cut(s)	201, 323, 489, 579
BspMI	ACCTGC	1 cut(s)	126
BspOI	GCTAGC	1 cut(s)	48
BspPI	GGATC	2 cut(s)	283, 497
BspQI	GCTCTTC	1 cut(s)	259
BsrFI	RCCGGY	3 cut(s)	190, 409, 574
BsrI	ACTGG	1 cut(s)	679
BssAI	RCCGGY	3 cut(s)	190, 409, 574
BssECI	CCNNGG	6 cut(s)	99, 128, 195, 331, 346, 468
BssMI	GATC	3 cut(s)	19, 275, 502
BssNI	GRCGYC	1 cut(s)	464
BssSI	CACGAG	2 cut(s)	242, 426
BssT1I	CCWWGG	2 cut(s)	195, 331
Bst2BI	CACGAG	2 cut(s)	242, 426
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	2 cut(s)	165, 259
BstACI	GRCGYC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	661
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	3 cut(s)	153, 258, 381
BstDSI	CCRYGG	2 cut(s)	195, 468
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	319
BstKTI	GATC	3 cut(s)	22, 278, 505
BstMBI	GATC	3 cut(s)	19, 275, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 485, 494
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	2 cut(s)	99, 226
BstUI	CGCG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BsuRI	GGCC	3 cut(s)	5, 133, 194
BtgI	CCRYGG	2 cut(s)	195, 468
BtsCI	GGATG	1 cut(s)	478
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	46
CaiI	CAGNNNCTG	1 cut(s)	521
Cfr10I	RCCGGY	3 cut(s)	190, 409, 574
Cfr13I	GGNCC	1 cut(s)	322
CseI	GACGC	4 cut(s)	360, 472, 486, 546
Csp6I	GTAC	1 cut(s)	572
CviAII	CATG	3 cut(s)	196, 292, 296
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	3 cut(s)	153, 258, 381
DpnI	GATC	3 cut(s)	21, 277, 504
DpnII	GATC	3 cut(s)	19, 275, 502
EaeI	YGGCCR	2 cut(s)	3, 192
Eam1104I	CTCTTC	2 cut(s)	165, 259
EarI	CTCTTC	2 cut(s)	165, 259
Eco130I	CCWWGG	2 cut(s)	195, 331
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	11
EcoT14I	CCWWGG	2 cut(s)	195, 331
EcoT22I	ATGCAT	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	2 cut(s)	195, 331
FaeI	CATG	3 cut(s)	199, 295, 299
FaiI	YATR	8 cut(s)	197, 293, 297, 358, 360, 422, 512, 617
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	3 cut(s)	195, 291, 295
FauI	CCCGC	2 cut(s)	312, 537
Fnu4HI	GCNGC	2 cut(s)	6, 173
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	6, 173
FspBI	CTAG	2 cut(s)	45, 135
GluI	GCNGC	2 cut(s)	6, 173
HaeIII	GGCC	3 cut(s)	5, 133, 194
HapII	CCGG	7 cut(s)	41, 101, 191, 227, 410, 441, 575
HgaI	GACGC	4 cut(s)	360, 472, 486, 546
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	3 cut(s)	199, 295, 299
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	32, 177
HpaI	GTTAAC	1 cut(s)	343
HpaII	CCGG	7 cut(s)	41, 101, 191, 227, 410, 441, 575
HphI	GGTGA	2 cut(s)	197, 424
Hpy166II	GTNNAC	3 cut(s)	188, 343, 415
Hpy188I	TCNGA	5 cut(s)	259, 275, 376, 384, 502
Hpy188III	TCNNGA	6 cut(s)	72, 140, 244, 279, 608, 637
Hpy8I	GTNNAC	3 cut(s)	188, 343, 415
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	102, 591
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	1 cut(s)	660
HpyCH4V	TGCA	5 cut(s)	112, 121, 295, 431, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 485, 494
HpyF3I	CTNAG	3 cut(s)	153, 258, 381
HpySE526I	ACGT	1 cut(s)	660
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	3 cut(s)	199, 295, 299
KspAI	GTTAAC	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	19, 275, 502
LguI	GCTCTTC	1 cut(s)	259
LmnI	GCTCC	5 cut(s)	199, 493, 523, 538, 583
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	2 cut(s)	45, 135
MaeII	ACGT	1 cut(s)	660
MalI	GATC	3 cut(s)	21, 277, 504
MboI	GATC	3 cut(s)	19, 275, 502
MboII	GAAGA	4 cut(s)	64, 152, 246, 585
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	5 cut(s)	11, 262, 436, 648, 666
MlyI	GAGTC	1 cut(s)	26
Mph1103I	ATGCAT	1 cut(s)	297
MroXI	GAANNNNTTC	1 cut(s)	253
MseI	TTAA	2 cut(s)	342, 366
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	2 cut(s)	8, 83
MspI	CCGG	7 cut(s)	41, 101, 191, 227, 410, 441, 575
MspR9I	CCNGG	2 cut(s)	101, 228
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	3 cut(s)	118, 485, 494
NciI	CCSGG	2 cut(s)	101, 228
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	3 cut(s)	19, 275, 502
NheI	GCTAGC	1 cut(s)	44
NlaIII	CATG	3 cut(s)	199, 295, 299
NlaIV	GGNNCC	4 cut(s)	201, 323, 489, 579
NmeAIII	GCCGAG	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	177
PflFI	GACNNNGTC	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	7, 174
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	661
PpuMI	RGGWCCY	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	322
PspN4I	GGNNCC	4 cut(s)	201, 323, 489, 579
PspPI	GGNCC	1 cut(s)	322
PspPPI	RGGWCCY	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	502
PsyI	GACNNNGTC	1 cut(s)	326
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
RseI	CAYNNNNRTG	1 cut(s)	383
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	342, 366
SatI	GCNGC	2 cut(s)	6, 173
Sau3AI	GATC	3 cut(s)	19, 275, 502
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	101, 228
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	99
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	5 cut(s)	11, 262, 436, 648, 666
SsiI	CCGC	3 cut(s)	6, 319, 544
SspMI	CTAG	2 cut(s)	45, 135
StyD4I	CCNGG	2 cut(s)	99, 226
StyI	CCWWGG	2 cut(s)	195, 331
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	1 cut(s)	663
TaqI	TCGA	1 cut(s)	311
TasI	AATT	5 cut(s)	11, 262, 436, 648, 666
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	2 cut(s)	342, 366
Tru9I	TTAA	2 cut(s)	342, 366
TseI	GCWGC	1 cut(s)	172
Tth111I	GACNNNGTC	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	322
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	253
XspI	CTAG	2 cut(s)	45, 135
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.