Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

13844845 .. 13846251

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG161500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCTCATCGTGGACCTATTCGGCACCGAATCTTTGCCCATTGCCGAGGAGTTTGGGATTCCAAAGTATGTGTACATTGCTTCCGATGCATGGTTCCTTTCTGTAATGATTTATTCTCCAACACTAGATGAGCAAGTTAAGGCTAAATATGTTGACCTCGAAGATCCACTAGAAATTCCTGGATACCCAGAACTTGATATCGTTGACGCTTTGCTGGACCGGAGTAATCAGCAGTACGATGAGCACATGCTGATGGGAAGAGGAATCCCAAAGGGTGATGGAATTTTGATAAACATATGGGAGGAACTAGAGCCCAAGTCCCTAGCAGCACTAAGAGATGAGAAATTCTTGGGCCGATTTGCGAATGTGCTTGTCTTTCCAATTGGGCCGTTGATGAGGCCCAATGTGTCTTCTAGCTTGAGGGGTGATGTGTTTGATTGGCTAGATGAGCTGCCCAATGAATTTGTGATTTACATGTCCTTTGGAAACGGTGGGGCCCTGTCATCTGAACAAATGGTCGAGCTAGCTTGGGGTTTAGAGATGAGTCAACAGAGTCCTTCTTACAATGTGTGGTACCAAGAATATCATAGGGTTCTAGCTGATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

202

Amino Acids

23.0

Weight (kDa)

4.19

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	573
AccB1I	GGYRCC	2 cut(s)	23, 573
AclWI	GGATC	1 cut(s)	158
AcsI	RAATTY	4 cut(s)	174, 282, 344, 461
AfaI	GTAC	3 cut(s)	74, 236, 575
AfiI	CCNNNNNNNGG	1 cut(s)	90
AflIII	ACRYGT	1 cut(s)	474
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	5 cut(s)	417, 451, 523, 527, 599
AluI	AGCT	5 cut(s)	417, 451, 523, 527, 599
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	158
AoxI	GGCC	4 cut(s)	352, 386, 398, 495
ApaI	GGGCCC	1 cut(s)	499
ApeKI	GCWGC	2 cut(s)	326, 451
ApoI	RAATTY	4 cut(s)	174, 282, 344, 461
Asp718I	GGTACC	1 cut(s)	573
AspS9I	GGNCC	7 cut(s)	13, 217, 352, 386, 399, 495, 496
AsuHPI	GGTGA	2 cut(s)	287, 437
AsuNHI	GCTAGC	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	13, 217
BaeGI	GKGCMC	1 cut(s)	499
BanI	GGYRCC	2 cut(s)	23, 573
BanII	GRGCYC	2 cut(s)	315, 499
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	338, 438
BccI	CCATC	2 cut(s)	247, 272
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	176
BclI	TGATCA	1 cut(s)	601
BfaI	CTAG	8 cut(s)	125, 170, 308, 323, 414, 443, 524, 596
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	2 cut(s)	327, 452
BlsI	GCNGC	2 cut(s)	328, 453
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	2 cut(s)	13, 217
BmgT120I	GGNCC	7 cut(s)	13, 217, 352, 386, 399, 495, 496
BmiI	GGNNCC	5 cut(s)	25, 95, 496, 497, 575
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	76
BmtI	GCTAGC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	439
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse3DI	GCAATG	2 cut(s)	39, 75
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMI	GCAATG	2 cut(s)	39, 75
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	2 cut(s)	338, 438
BshFI	GGCC	4 cut(s)	354, 388, 400, 497
BshNI	GGYRCC	2 cut(s)	23, 573
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	4 cut(s)	354, 388, 400, 497
Bsp120I	GGGCCC	1 cut(s)	495
Bsp1286I	GDGCHC	3 cut(s)	246, 315, 499
Bsp1407I	TGTACA	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	163, 601
BspANI	GGCC	4 cut(s)	354, 388, 400, 497
BspLI	GGNNCC	5 cut(s)	25, 95, 496, 497, 575
BspOI	GCTAGC	1 cut(s)	527
BspPI	GGATC	1 cut(s)	158
BspT107I	GGYRCC	2 cut(s)	23, 573
BsrDI	GCAATG	2 cut(s)	39, 75
BsrGI	TGTACA	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	163, 601
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	253
BstAUI	TGTACA	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	1 cut(s)	332
BstKTI	GATC	2 cut(s)	166, 604
BstMBI	GATC	2 cut(s)	163, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 448
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	2 cut(s)	250, 478
BstSCI	CCNGG	1 cut(s)	178
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	338, 438
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	4 cut(s)	354, 388, 400, 497
Cac8I	GCNNGC	1 cut(s)	525
Cfr13I	GGNCC	7 cut(s)	13, 217, 352, 386, 399, 495, 496
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	3 cut(s)	73, 235, 574
CviAII	CATG	3 cut(s)	90, 247, 475
CviQI	GTAC	3 cut(s)	73, 235, 574
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	2 cut(s)	165, 603
DpnII	GATC	2 cut(s)	163, 601
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco24I	GRGCYC	2 cut(s)	315, 499
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	13, 217
EcoO109I	RGGNCCY	2 cut(s)	495, 496
EcoRII	CCWGG	1 cut(s)	178
EcoRV	GATATC	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	2 cut(s)	315, 499
FaeI	CATG	3 cut(s)	93, 250, 478
FaiI	YATR	8 cut(s)	69, 91, 150, 248, 296, 298, 476, 588
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	3 cut(s)	89, 246, 474
FauNDI	CATATG	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	2 cut(s)	327, 452
FriOI	GRGCYC	2 cut(s)	315, 499
Fsp4HI	GCNGC	2 cut(s)	327, 452
FspBI	CTAG	8 cut(s)	125, 170, 308, 323, 414, 443, 524, 596
GluI	GCNGC	2 cut(s)	327, 452
HaeIII	GGCC	4 cut(s)	354, 388, 400, 497
HapII	CCGG	1 cut(s)	220
HgaI	GACGC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	93, 250, 478
HincII	GTYRAC	3 cut(s)	154, 205, 548
HindII	GTYRAC	3 cut(s)	154, 205, 548
HinfI	GANTC	5 cut(s)	29, 58, 264, 544, 553
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	2 cut(s)	287, 437
Hpy166II	GTNNAC	5 cut(s)	13, 73, 154, 205, 548
Hpy188I	TCNGA	2 cut(s)	85, 508
Hpy8I	GTNNAC	5 cut(s)	13, 73, 154, 205, 548
HpyAV	CCTTC	1 cut(s)	567
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 448
HpyF3I	CTNAG	1 cut(s)	332
Hsp92II	CATG	3 cut(s)	93, 250, 478
KpnI	GGTACC	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	2 cut(s)	163, 601
LpnPI	CCDG	6 cut(s)	165, 192, 200, 201, 233, 512
Lsp1109I	GCAGC	2 cut(s)	338, 438
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	8 cut(s)	125, 170, 308, 323, 414, 443, 524, 596
MalI	GATC	2 cut(s)	165, 603
MboI	GATC	2 cut(s)	163, 601
MboII	GAAGA	3 cut(s)	173, 270, 402
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	3 cut(s)	246, 315, 499
MluCI	AATT	5 cut(s)	174, 282, 344, 381, 461
MlyI	GAGTC	2 cut(s)	553, 562
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	6 cut(s)	40, 167, 254, 295, 390, 414
Mph1103I	ATGCAT	1 cut(s)	91
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	180
MunI	CAATTG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	86, 448
NdeI	CATATG	1 cut(s)	296
NdeII	GATC	2 cut(s)	163, 601
NheI	GCTAGC	1 cut(s)	523
NlaIII	CATG	3 cut(s)	93, 250, 478
NlaIV	GGNNCC	5 cut(s)	25, 95, 496, 497, 575
NmeAIII	GCCGAG	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	91
NspI	RCATGY	2 cut(s)	250, 478
PciI	ACATGT	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	29, 58, 264
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	328, 453
PleI	GAGTC	2 cut(s)	552, 561
PpsI	GAGTC	2 cut(s)	552, 561
PscI	ACATGT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	5 cut(s)	25, 95, 496, 497, 575
PspOMI	GGGCCC	1 cut(s)	495
PspPI	GGNCC	7 cut(s)	13, 217, 352, 386, 399, 495, 496
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	3 cut(s)	74, 236, 575
RsaNI	GTAC	3 cut(s)	73, 235, 574
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	2 cut(s)	327, 452
Sau3AI	GATC	2 cut(s)	163, 601
Sau96I	GGNCC	7 cut(s)	13, 217, 352, 386, 399, 495, 496
SchI	GAGTC	2 cut(s)	553, 562
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	3 cut(s)	246, 315, 499
SetI	ASST	7 cut(s)	18, 159, 419, 453, 525, 529, 601
SfaNI	GCATC	1 cut(s)	76
SinI	GGWCC	2 cut(s)	13, 217
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	5 cut(s)	174, 282, 344, 381, 461
SspMI	CTAG	8 cut(s)	125, 170, 308, 323, 414, 443, 524, 596
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	491
TaqI	TCGA	2 cut(s)	159, 519
TasI	AATT	5 cut(s)	174, 282, 344, 381, 461
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	3 cut(s)	29, 58, 264
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseI	GCWGC	2 cut(s)	326, 451
TspDTI	ATGAA	1 cut(s)	474
VpaK11BI	GGWCC	2 cut(s)	13, 217
XapI	RAATTY	4 cut(s)	174, 282, 344, 461
XceI	RCATGY	2 cut(s)	250, 478
XspI	CTAG	8 cut(s)	125, 170, 308, 323, 414, 443, 524, 596
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.