Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

41705707 .. 41706506

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029634

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGATGCAAGAAGTACGACCAACGTTTTGGTCAGCTCTGCAAGACATGAAGTTTTATCCTACCATGCTTATTATGGACTTCTCTGGCACCGAATCTCTGCCCATTGCAGAAGAGTTTGGGATTCTCAATTACACCTACGTTGCTTCCAATGCATGGTTCCTTTCTCTCATGGTATATTCTCCTACACTGGATGAAGAAGTGGAAGGAGAATTCGTTGACGAGAAAGAGCGAATGAGAATCCCTAGTTCTAGAGCCGAAGACACTGGCATCACTTGGAGATCAGAAACTCCTAGGCTGATTTATGAAGGTGCCAAATCCAATGTATCATTTGGTTCAAAGGAGAAGGTGTTGTTTGATTGGCTAGATGAGCAGCCCAATGAGTCAGTGATTTACGTGTCCTTTGGTAACGGTTACGATGATGACAATAATCCATTGAAGTTCATGCCTAAGGGGTTCTTGGATTGGACCAAGGGCATTGGTCTTGTCATCCCTGTATGGGCTCCTCAAGTGGACATCTTGGCGCATCAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

178

Amino Acids

20.34

Weight (kDa)

4.35

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	86, 308
AccB7I	CCANNNNNTGG	1 cut(s)	153
AclI	AACGTT	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	153, 496
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	2 cut(s)	336, 436
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	370
ApoI	RAATTY	1 cut(s)	209
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AspA2I	CCTAGG	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	523
AspS9I	GGNCC	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	465
AvrII	CCTAGG	1 cut(s)	290
AxyI	CCTNAGG	1 cut(s)	447
BanI	GGYRCC	2 cut(s)	86, 308
BanII	GRGCYC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	382
BfaI	CTAG	4 cut(s)	243, 249, 291, 362
BisI	GCNGC	1 cut(s)	371
BlnI	CCTAGG	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	4 cut(s)	88, 158, 310, 501
BmsI	GCATC	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	489
BsaAI	YACGTR	1 cut(s)	394
BsaJI	CCNNGG	2 cut(s)	290, 468
BsaXI	ACNNNNNCTCC	4 cut(s)	198, 228, 332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 496
Bse1I	ACTGG	2 cut(s)	192, 268
Bse21I	CCTNAGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	290, 468
BseGI	GGATG	2 cut(s)	196, 486
BseLI	CCNNNNNNNGG	2 cut(s)	153, 496
BseMI	GCAATG	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	192, 268
BseRI	GAGGAG	1 cut(s)	492
BseXI	GCAGC	1 cut(s)	382
BshNI	GGYRCC	2 cut(s)	86, 308
BslI	CCNNNNNNNGG	2 cut(s)	153, 496
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	1 cut(s)	278
BspLI	GGNNCC	4 cut(s)	88, 158, 310, 501
BspT107I	GGYRCC	2 cut(s)	86, 308
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	192, 268
BssECI	CCNNGG	2 cut(s)	290, 468
BssMI	GATC	1 cut(s)	278
BssT1I	CCWWGG	2 cut(s)	290, 468
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	105
BstBAI	YACGTR	1 cut(s)	394
BstDEI	CTNAG	1 cut(s)	447
BstF5I	GGATG	2 cut(s)	196, 486
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 367
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	264
BstXI	CCANNNNNNTGG	1 cut(s)	27
Bsu36I	CCTNAGG	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	196, 486
BtsIMutI	CAGTG	3 cut(s)	185, 261, 390
CfoI	GCGC	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	465
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	5 cut(s)	46, 64, 153, 169, 442
CviJI	RGCY	6 cut(s)	35, 254, 295, 361, 373, 500
CviKI_1	RGCY	6 cut(s)	35, 254, 295, 361, 373, 500
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	2 cut(s)	290, 468
Eco24I	GRGCYC	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	465
Eco81I	CCTNAGG	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	209
EcoT14I	CCWWGG	2 cut(s)	290, 468
EcoT22I	ATGCAT	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	502
ErhI	CCWWGG	2 cut(s)	290, 468
FaeI	CATG	5 cut(s)	49, 67, 156, 172, 445
FaiI	YATR	9 cut(s)	47, 65, 74, 154, 170, 175, 303, 443, 496
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FatI	CATG	5 cut(s)	45, 63, 152, 168, 441
Fnu4HI	GCNGC	1 cut(s)	371
FokI	GGATG	2 cut(s)	203, 473
FriOI	GRGCYC	1 cut(s)	502
Fsp4HI	GCNGC	1 cut(s)	371
FspBI	CTAG	4 cut(s)	243, 249, 291, 362
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	1 cut(s)	371
HhaI	GCGC	1 cut(s)	523
Hin1II	CATG	5 cut(s)	49, 67, 156, 172, 445
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	4 cut(s)	92, 121, 237, 380
Hpy166II	GTNNAC	2 cut(s)	217, 511
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	249
Hpy8I	GTNNAC	2 cut(s)	217, 511
HpyAV	CCTTC	3 cut(s)	197, 299, 337
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	3 cut(s)	23, 138, 393
HpyCH4V	TGCA	4 cut(s)	7, 40, 107, 152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 367
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	3 cut(s)	23, 138, 393
Hsp92II	CATG	5 cut(s)	49, 67, 156, 172, 445
HspAI	GCGC	1 cut(s)	521
Kzo9I	GATC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	505
LpnPI	CCDG	4 cut(s)	69, 173, 249, 504
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	4 cut(s)	243, 249, 291, 362
MaeII	ACGT	3 cut(s)	23, 138, 393
MaeIII	GTNAC	2 cut(s)	404, 410
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	3 cut(s)	122, 206, 269
MfeI	CAATTG	1 cut(s)	527
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	3 cut(s)	127, 209, 527
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	1 cut(s)	513
Mph1103I	ATGCAT	1 cut(s)	154
MunI	CAATTG	1 cut(s)	527
MwoI	GCNNNNNNNGC	2 cut(s)	149, 367
NdeII	GATC	1 cut(s)	278
NlaIII	CATG	5 cut(s)	49, 67, 156, 172, 445
NlaIV	GGNNCC	4 cut(s)	88, 158, 310, 501
NsiI	ATGCAT	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	92, 121, 237
PflMI	CCANNNNNTGG	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	372
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
Ppu21I	YACGTR	1 cut(s)	394
Psp1406I	AACGTT	1 cut(s)	23
PspN4I	GGNNCC	4 cut(s)	88, 158, 310, 501
PspPI	GGNCC	1 cut(s)	465
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SatI	GCNGC	1 cut(s)	371
Sau3AI	GATC	1 cut(s)	278
Sau96I	GGNCC	1 cut(s)	465
SchI	GAGTC	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	7 cut(s)	26, 37, 137, 141, 310, 348, 396
SfaNI	GCATC	1 cut(s)	276
SinI	GGWCC	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
Sse9I	AATT	3 cut(s)	127, 209, 527
SspMI	CTAG	4 cut(s)	243, 249, 291, 362
StyI	CCWWGG	2 cut(s)	290, 468
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	3 cut(s)	26, 141, 396
TasI	AATT	3 cut(s)	127, 209, 527
TfiI	GAWTC	3 cut(s)	92, 121, 237
TscAI	CASTG	3 cut(s)	192, 268, 390
TseI	GCWGC	1 cut(s)	370
TspDTI	ATGAA	4 cut(s)	62, 207, 318, 430
TspRI	CASTG	3 cut(s)	192, 268, 390
Van91I	CCANNNNNTGG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	465
XapI	RAATTY	1 cut(s)	209
XbaI	TCTAGA	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XmaJI	CCTAGG	1 cut(s)	290
XspI	CTAG	4 cut(s)	243, 249, 291, 362
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.