Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

8671072 .. 8671947

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g12100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGCTCAAAGCCACATGCTGCCATACTTTGCAGCCCAGGCCTCGGCCACCTCATCCCCGCCCTCGAACTCGCAAAACGACTTGTCACCCACCGGAATTTCACCGTGACGATCTTCGCCATCCCATCTCCTACTTCCAAGACTGAGTCTGAGCTCCTCAAGGCAGCCGCCACCCCCAAATTTTTTGACATTATTGAACTCCCACCGCCCGACATTTCCGGCTGTGTTGGCCCCGATGCTGCTGTCGCTACCCTCCTGGCAGTCATGATGCGTGAAGTACGACCTGCGTTTCGGTCAGCCATACTTGGAATGGAGTCTTCCCTTCGTCCTACAGTGCTTATCGTGGACCTCTTCAGCACCGAATCTCTGTCCATCGGCGACGAGCTGGGGATTCCCAAGTACGTTTACATTGCTAGCACTGCATGGTTCGTAGCTTTGACTGTATACGGGCCAGTTTTTGATAAAGAGGTGGAAGGAGAGTACGTGAACCAGACTGAACCGCTGAGAATTCCGGGTTGCAAGCCCGTTCAGCCCGAAGACTTGGTTGACCCGATGCTGGACCGGACTGACCAACAATATTTGGAATATGTAAGGATGGGTACTAATTTCCCGAAGAGTGATGGGATTTTGATGAACACATGGGAGGACTTGGAGCACAAAACAATAGATGCGTTACGGGATGAGGGACTCTTGGGTAGAGTGGCTAAGGTGCCAGTTTATCCCATTGGACCATTAACGAGGCCGGTCCAATCAGCCGGTTCAACCTCAACCGGTCTAAGGGAGGAGGGCTTGTTTAATTGGCTAGACAAGCAACCTTGTGAATCTGTGATATTTGTGTCATTAGGGAGTGGAGGACTGTGTCCTTTGAGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

292

Amino Acids

31.73

Weight (kDa)

5.05

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	709
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	4 cut(s)	60, 168, 206, 500
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	3 cut(s)	97, 179, 507
AcuI	CTGAAG	1 cut(s)	337
AfaI	GTAC	4 cut(s)	279, 401, 482, 601
AfiI	CCNNNNNNNGG	3 cut(s)	44, 556, 777
AgeI	ACCGGT	1 cut(s)	770
AgsI	TTSAA	2 cut(s)	197, 762
AjnI	CCWGG	2 cut(s)	37, 255
AluBI	AGCT	4 cut(s)	6, 154, 385, 434
AluI	AGCT	4 cut(s)	6, 154, 385, 434
Alw21I	GWGCWC	3 cut(s)	8, 156, 657
AoxI	GGCC	5 cut(s)	40, 46, 229, 449, 740
ApeKI	GCWGC	4 cut(s)	20, 33, 164, 239
ApoI	RAATTY	3 cut(s)	97, 179, 507
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AsiGI	ACCGGT	1 cut(s)	770
AspS9I	GGNCC	6 cut(s)	230, 346, 449, 559, 728, 745
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	2 cut(s)	79, 94
AsuNHI	GCTAGC	1 cut(s)	413
AvaII	GGWCC	4 cut(s)	346, 559, 728, 745
BanI	GGYRCC	1 cut(s)	709
BanII	GRGCYC	2 cut(s)	8, 156
BbsI	GAAGAC	2 cut(s)	309, 543
Bbv12I	GWGCWC	3 cut(s)	8, 156, 657
BbvI	GCAGC	4 cut(s)	7, 45, 176, 226
BccI	CCATC	5 cut(s)	128, 133, 380, 589, 614
BciT130I	CCWGG	2 cut(s)	39, 257
BcnI	CCSGG	1 cut(s)	513
BfaI	CTAG	2 cut(s)	414, 803
BfmI	CTRYAG	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	5 cut(s)	21, 34, 165, 168, 240
BlsI	GCNGC	5 cut(s)	22, 35, 166, 169, 241
Bme1390I	CCNGG	3 cut(s)	39, 257, 513
Bme18I	GGWCC	4 cut(s)	346, 559, 728, 745
BmgT120I	GGNCC	6 cut(s)	230, 346, 449, 559, 728, 745
BmiI	GGNNCC	2 cut(s)	232, 711
BmrFI	CCNGG	3 cut(s)	39, 257, 513
BmsI	GCATC	4 cut(s)	226, 258, 543, 658
BmtI	GCTAGC	1 cut(s)	417
BpiI	GAAGAC	2 cut(s)	309, 543
Bpu10I	CCTNAGC	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	513
BsaAI	YACGTR	1 cut(s)	484
BsaJI	CCNNGG	2 cut(s)	37, 43
BsaWI	WCCGGW	3 cut(s)	93, 561, 770
BsaXI	ACNNNNNCTCC	4 cut(s)	468, 498, 776, 806
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 556, 777
Bse118I	RCCGGY	3 cut(s)	742, 755, 770
Bse1I	ACTGG	2 cut(s)	452, 713
Bse3DI	GCAATG	1 cut(s)	408
BseBI	CCWGG	2 cut(s)	39, 257
BseDI	CCNNGG	2 cut(s)	37, 43
BseGI	GGATG	4 cut(s)	54, 120, 600, 685
BseLI	CCNNNNNNNGG	3 cut(s)	44, 556, 777
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	3 cut(s)	135, 141, 494
BseNI	ACTGG	2 cut(s)	452, 713
BseRI	GAGGAG	2 cut(s)	146, 797
BseXI	GCAGC	4 cut(s)	7, 45, 176, 226
BseYI	CCCAGC	1 cut(s)	385
BshFI	GGCC	5 cut(s)	42, 48, 231, 451, 742
BshNI	GGYRCC	1 cut(s)	709
BshTI	ACCGGT	1 cut(s)	770
BsiHKAI	GWGCWC	3 cut(s)	8, 156, 657
BsiSI	CCGG	7 cut(s)	94, 219, 512, 562, 743, 756, 771
BslFI	GGGAC	1 cut(s)	699
BslI	CCNNNNNNNGG	3 cut(s)	44, 556, 777
BsmFI	GGGAC	1 cut(s)	699
BsnI	GGCC	5 cut(s)	42, 48, 231, 451, 742
Bsp1286I	GDGCHC	3 cut(s)	8, 156, 657
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	4 cut(s)	60, 168, 206, 500
BspANI	GGCC	5 cut(s)	42, 48, 231, 451, 742
BspCNI	CTCAG	3 cut(s)	136, 142, 495
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	232, 711
BspMI	ACCTGC	1 cut(s)	292
BspOI	GCTAGC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	709
BsrDI	GCAATG	1 cut(s)	408
BsrFI	RCCGGY	3 cut(s)	742, 755, 770
BsrI	ACTGG	2 cut(s)	452, 713
BssAI	RCCGGY	3 cut(s)	742, 755, 770
BssECI	CCNNGG	2 cut(s)	37, 43
BssMI	GATC	1 cut(s)	111
BssNAI	GTATAC	1 cut(s)	445
Bst1107I	GTATAC	1 cut(s)	445
Bst2UI	CCWGG	2 cut(s)	39, 257
Bst4CI	ACNGT	4 cut(s)	106, 334, 442, 858
Bst6I	CTCTTC	2 cut(s)	356, 608
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	415, 521
BstDEI	CTNAG	5 cut(s)	144, 150, 503, 705, 776
BstF5I	GGATG	4 cut(s)	54, 120, 600, 685
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 228, 245, 419, 529, 808
BstNI	CCWGG	2 cut(s)	39, 257
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	3 cut(s)	37, 255, 511
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	7, 45, 176, 226
BstV2I	GAAGAC	2 cut(s)	309, 543
BstZ17I	GTATAC	1 cut(s)	445
BsuRI	GGCC	5 cut(s)	42, 48, 231, 451, 742
BtsCI	GGATG	4 cut(s)	54, 120, 600, 685
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	2 cut(s)	339, 417
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	415, 521
CciI	TCATGA	1 cut(s)	264
Cfr10I	RCCGGY	3 cut(s)	742, 755, 770
Cfr13I	GGNCC	6 cut(s)	230, 346, 449, 559, 728, 745
Csp6I	GTAC	4 cut(s)	278, 400, 481, 600
CspAI	ACCGGT	1 cut(s)	770
CviAII	CATG	4 cut(s)	17, 265, 423, 639
CviQI	GTAC	4 cut(s)	278, 400, 481, 600
DdeI	CTNAG	5 cut(s)	144, 150, 503, 705, 776
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	356, 608
EarI	CTCTTC	2 cut(s)	356, 608
Ecl136II	GAGCTC	2 cut(s)	6, 154
Eco147I	AGGCCT	1 cut(s)	42
Eco24I	GRGCYC	2 cut(s)	8, 156
Eco47I	GGWCC	4 cut(s)	346, 559, 728, 745
Eco53kI	GAGCTC	2 cut(s)	6, 154
Eco57I	CTGAAG	1 cut(s)	337
EcoICRI	GAGCTC	2 cut(s)	6, 154
EcoRI	GAATTC	1 cut(s)	507
EcoRII	CCWGG	2 cut(s)	37, 255
EcoT38I	GRGCYC	2 cut(s)	8, 156
FaeI	CATG	4 cut(s)	20, 268, 426, 642
FaiI	YATR	8 cut(s)	18, 26, 266, 302, 424, 445, 588, 640
FaqI	GGGAC	1 cut(s)	699
FatI	CATG	4 cut(s)	16, 264, 422, 638
FauI	CCCGC	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	5 cut(s)	21, 34, 165, 168, 240
FokI	GGATG	4 cut(s)	41, 107, 607, 692
FriOI	GRGCYC	2 cut(s)	8, 156
Fsp4HI	GCNGC	5 cut(s)	21, 34, 165, 168, 240
FspBI	CTAG	2 cut(s)	414, 803
GluI	GCNGC	5 cut(s)	21, 34, 165, 168, 240
GsaI	CCCAGC	1 cut(s)	389
HaeIII	GGCC	5 cut(s)	42, 48, 231, 451, 742
HapII	CCGG	7 cut(s)	94, 219, 512, 562, 743, 756, 771
Hin1II	CATG	4 cut(s)	20, 268, 426, 642
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	6 cut(s)	146, 314, 362, 391, 687, 821
HpaII	CCGG	7 cut(s)	94, 219, 512, 562, 743, 756, 771
HphI	GGTGA	2 cut(s)	79, 94
Hpy166II	GTNNAC	5 cut(s)	346, 406, 445, 487, 547
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	2 cut(s)	265, 610
Hpy8I	GTNNAC	5 cut(s)	346, 406, 445, 487, 547
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	2 cut(s)	332, 467
HpyCH4III	ACNGT	4 cut(s)	106, 334, 442, 858
HpyCH4IV	ACGT	2 cut(s)	402, 483
HpyCH4V	TGCA	3 cut(s)	33, 422, 519
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 228, 245, 419, 529, 808
HpyF3I	CTNAG	5 cut(s)	144, 150, 503, 705, 776
HpySE526I	ACGT	2 cut(s)	402, 483
Hsp92II	CATG	4 cut(s)	20, 268, 426, 642
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	2 cut(s)	159, 652
Lsp1109I	GCAGC	4 cut(s)	7, 45, 176, 226
LweI	GCATC	4 cut(s)	226, 258, 543, 658
MaeI	CTAG	2 cut(s)	414, 803
MaeII	ACGT	2 cut(s)	402, 483
MaeIII	GTNAC	3 cut(s)	85, 106, 672
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	5 cut(s)	106, 309, 343, 548, 625
MhlI	GDGCHC	3 cut(s)	8, 156, 657
MluCI	AATT	5 cut(s)	97, 179, 507, 604, 796
MlyI	GAGTC	3 cut(s)	155, 323, 681
MseI	TTAA	2 cut(s)	734, 795
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	7 cut(s)	94, 219, 512, 562, 743, 756, 771
MspR9I	CCNGG	3 cut(s)	39, 257, 513
MvaI	CCWGG	2 cut(s)	39, 257
MwoI	GCNNNNNNNGC	6 cut(s)	39, 228, 245, 419, 529, 808
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	1 cut(s)	111
NheI	GCTAGC	1 cut(s)	413
NlaIII	CATG	4 cut(s)	20, 268, 426, 642
NlaIV	GGNNCC	2 cut(s)	232, 711
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	2 cut(s)	85, 106
NspI	RCATGY	1 cut(s)	20
PagI	TCATGA	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	362, 391, 821
PflFI	GACNNNGTC	2 cut(s)	145, 858
PinAI	ACCGGT	1 cut(s)	770
PkrI	GCNGC	5 cut(s)	22, 35, 166, 169, 241
PleI	GAGTC	3 cut(s)	154, 322, 681
PpsI	GAGTC	3 cut(s)	154, 322, 681
Ppu21I	YACGTR	1 cut(s)	484
Psp124BI	GAGCTC	2 cut(s)	8, 156
Psp6I	CCWGG	2 cut(s)	37, 255
PspFI	CCCAGC	1 cut(s)	385
PspGI	CCWGG	2 cut(s)	37, 255
PspN4I	GGNNCC	2 cut(s)	232, 711
PspPI	GGNCC	6 cut(s)	230, 346, 449, 559, 728, 745
PsyI	GACNNNGTC	2 cut(s)	145, 858
RsaI	GTAC	4 cut(s)	279, 401, 482, 601
RsaNI	GTAC	4 cut(s)	278, 400, 481, 600
SacI	GAGCTC	2 cut(s)	8, 156
SaqAI	TTAA	2 cut(s)	734, 795
SatI	GCNGC	5 cut(s)	21, 34, 165, 168, 240
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	6 cut(s)	230, 346, 449, 559, 728, 745
SchI	GAGTC	3 cut(s)	155, 323, 681
ScrFI	CCNGG	3 cut(s)	39, 257, 513
SduI	GDGCHC	3 cut(s)	8, 156, 657
SfaNI	GCATC	4 cut(s)	226, 258, 543, 658
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	4 cut(s)	346, 559, 728, 745
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	5 cut(s)	97, 179, 507, 604, 796
SseBI	AGGCCT	1 cut(s)	42
SsiI	CCGC	4 cut(s)	60, 168, 206, 500
SspI	AATATT	1 cut(s)	578
SspMI	CTAG	2 cut(s)	414, 803
SstI	GAGCTC	2 cut(s)	8, 156
StuI	AGGCCT	1 cut(s)	42
StyD4I	CCNGG	3 cut(s)	37, 255, 511
TaaI	ACNGT	4 cut(s)	106, 334, 442, 858
TaiI	ACGT	2 cut(s)	405, 486
TaqI	TCGA	1 cut(s)	66
TaqII	GACCGA	1 cut(s)	282
TasI	AATT	5 cut(s)	97, 179, 507, 604, 796
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	3 cut(s)	362, 391, 821
Tru1I	TTAA	2 cut(s)	734, 795
Tru9I	TTAA	2 cut(s)	734, 795
TscAI	CASTG	2 cut(s)	339, 424
TseFI	GTSAC	2 cut(s)	85, 106
TseI	GCWGC	4 cut(s)	20, 33, 164, 239
Tsp45I	GTSAC	2 cut(s)	85, 106
TspDTI	ATGAA	1 cut(s)	647
TspRI	CASTG	2 cut(s)	339, 424
Tth111I	GACNNNGTC	2 cut(s)	145, 858
VpaK11BI	GGWCC	4 cut(s)	346, 559, 728, 745
XapI	RAATTY	3 cut(s)	97, 179, 507
XceI	RCATGY	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	2 cut(s)	414, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.