Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

13806297 .. 13806680

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG161300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATGTACTCTCCAACCCTAGACAAGGAAGTGGAAGGAGAATACGTGGACCGAACCGAACCGCTCAAAATTCCTGGTTGTAGGGCACTTCGGCCTGAAGACGTGGTTGACCCGATGCTGGACCGGACCAATCAGCAATATTCTGAATACATACGATTTTGTGCTGAGATTCCACTCGGTGATGGGATTTTGCTGAATATTTGGGAGGAGTTGCAGCCTACAACACTAGCTGCGTTTAGAGATGAAAAACTATTGGGTGGAGTGACTGAAATGGTGCCAGTTTATCCAATTGGACCGTTAACTAGATCGGTCCAATCGGGTTGTCCAAGGGTTAATGAGGACTTGTTTGATTGGCTTGACAAACAACCCAGTGAGTCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

127

Amino Acids

14.42

Weight (kDa)

4.33

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	274
AccBSI	CCGCTC	1 cut(s)	64
AciI	CCGC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	25, 118
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	2 cut(s)	214, 230
ApoI	RAATTY	1 cut(s)	69
AspS9I	GGNCC	5 cut(s)	49, 121, 126, 293, 310
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	5 cut(s)	49, 121, 126, 293, 310
BaeGI	GKGCMC	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	217, 226
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	75
BfaI	CTAG	3 cut(s)	20, 227, 303
BisI	GCNGC	2 cut(s)	215, 231
BlsI	GCNGC	2 cut(s)	216, 232
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	5 cut(s)	49, 121, 126, 293, 310
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	5 cut(s)	49, 121, 126, 293, 310
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	75
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	326
BsaWI	WCCGGW	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 118
Bse1I	ACTGG	2 cut(s)	278, 369
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	326
BseLI	CCNNNNNNNGG	2 cut(s)	25, 118
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	278, 369
BseRI	GAGGAG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	217, 226
BshFI	GGCC	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	25, 118
BsnI	GGCC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	305
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	274
BsrBI	CCGCTC	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	278, 369
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	165
BstENI	CCTNNNNNAGG	1 cut(s)	23
BstKTI	GATC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	217, 226
BstV2I	GAAGAC	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	94
BtrI	CACGTC	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	376
Cfr13I	GGNCC	5 cut(s)	49, 121, 126, 293, 310
Csp6I	GTAC	1 cut(s)	7
CviJI	RGCY	5 cut(s)	94, 217, 230, 355, 380
CviKI_1	RGCY	5 cut(s)	94, 217, 230, 355, 380
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	307
DpnII	GATC	1 cut(s)	305
DraIII	CACNNNGTG	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	326
Eco47I	GGWCC	5 cut(s)	49, 121, 126, 293, 310
Eco57I	CTGAAG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaiI	YATR	1 cut(s)	152
Fnu4HI	GCNGC	2 cut(s)	215, 231
Fsp4HI	GCNGC	2 cut(s)	215, 231
FspBI	CTAG	3 cut(s)	20, 227, 303
GluI	GCNGC	2 cut(s)	215, 231
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	124
HincII	GTYRAC	2 cut(s)	109, 300
HindII	GTYRAC	2 cut(s)	109, 300
HinfI	GANTC	2 cut(s)	169, 374
HpaI	GTTAAC	1 cut(s)	300
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	3 cut(s)	49, 109, 300
Hpy188I	TCNGA	1 cut(s)	145
Hpy8I	GTNNAC	3 cut(s)	49, 109, 300
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4IV	ACGT	2 cut(s)	45, 102
HpyCH4V	TGCA	1 cut(s)	214
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	2 cut(s)	45, 102
KspAI	GTTAAC	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	305
LpnPI	CCDG	6 cut(s)	60, 87, 104, 108, 137, 291
Lsp1109I	GCAGC	2 cut(s)	217, 226
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	3 cut(s)	20, 227, 303
MaeII	ACGT	2 cut(s)	45, 102
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	307
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	1 cut(s)	305
MboII	GAAGA	1 cut(s)	110
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	2 cut(s)	69, 288
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	2 cut(s)	199, 331
MseI	TTAA	2 cut(s)	299, 333
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	216, 232
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
Ppu21I	YACGTR	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	5 cut(s)	49, 121, 126, 293, 310
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	299, 333
SatI	GCNGC	2 cut(s)	215, 231
Sau3AI	GATC	1 cut(s)	305
Sau96I	GGNCC	5 cut(s)	49, 121, 126, 293, 310
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	3 cut(s)	48, 105, 232
SfaNI	GCATC	1 cut(s)	105
SinI	GGWCC	5 cut(s)	49, 121, 126, 293, 310
Sse9I	AATT	2 cut(s)	69, 288
SsiI	CCGC	1 cut(s)	62
SspI	AATATT	2 cut(s)	140, 199
SspMI	CTAG	3 cut(s)	20, 227, 303
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	297
TaiI	ACGT	2 cut(s)	48, 105
TaqII	GACCGA	2 cut(s)	66, 298
TasI	AATT	2 cut(s)	69, 288
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	299, 333
Tru9I	TTAA	2 cut(s)	299, 333
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	214, 230
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	5 cut(s)	49, 121, 126, 293, 310
XagI	CCTNNNNNAGG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	69
XspI	CTAG	3 cut(s)	20, 227, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.