Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

14031923 .. 14032216

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG160600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGAGAGCTCAAATCATCAACAACATGCAGCACTGCTCTGCAGCCCAGGAATGGGCCATCTGATCATCCCTTTGCTCGAGCTCGGAAAGCGACTTGTCGTCCACCAAAACTTCATCGGCACAATCTTGGTCGTCCCTTCCAACACTTCCAAGGTCGAAAGACTCGAAACCGAGCTCCTCCAGGCAGACGCCGTCCTCGAAACCATCGAACTTCCGCCACCAGACATTTCCGGCGTCGCTAACCCTGATGCTGACGTCGTCACCCGCATAGCGGCAATGATGCGAGAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

97

Amino Acids

10.5

Weight (kDa)

4.96

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AciI	CCGC	3 cut(s)	215, 265, 272
AcyI	GRCGYC	3 cut(s)	189, 234, 255
AfiI	CCNNNNNNNGG	3 cut(s)	52, 53, 271
AhdI	GACNNNNNGTC	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	46, 180
AluBI	AGCT	3 cut(s)	9, 82, 175
AluI	AGCT	3 cut(s)	9, 82, 175
Alw21I	GWGCWC	3 cut(s)	11, 84, 177
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	29, 42
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	77
BanII	GRGCYC	3 cut(s)	11, 84, 177
Bbv12I	GWGCWC	3 cut(s)	11, 84, 177
BbvI	GCAGC	2 cut(s)	41, 54
BccI	CCATC	2 cut(s)	66, 212
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	2 cut(s)	48, 182
BclI	TGATCA	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	40
BisI	GCNGC	3 cut(s)	30, 43, 273
BlsI	GCNGC	3 cut(s)	31, 44, 274
Bme1390I	CCNGG	2 cut(s)	48, 182
BmeRI	GACNNNNNGTC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	48, 182
BmsI	GCATC	2 cut(s)	238, 270
BpmI	CTGGAG	1 cut(s)	164
BsaHI	GRCGYC	3 cut(s)	189, 234, 255
BsaJI	CCNNGG	2 cut(s)	46, 150
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 53, 271
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	48, 182
BseDI	CCNNGG	2 cut(s)	46, 150
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	3 cut(s)	52, 53, 271
BseMI	GCAATG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	41, 54
BshFI	GGCC	1 cut(s)	57
BsiHKAI	GWGCWC	3 cut(s)	11, 84, 177
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	3 cut(s)	52, 53, 271
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	3 cut(s)	11, 84, 177
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	3 cut(s)	215, 265, 272
BspANI	GGCC	1 cut(s)	57
BspMAI	CTGCAG	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	46, 150
BssMI	GATC	1 cut(s)	63
BssNI	GRCGYC	3 cut(s)	189, 234, 255
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	48, 182
BstACI	GRCGYC	3 cut(s)	189, 234, 255
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	2 cut(s)	48, 182
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	46, 180
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	41, 54
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	2 cut(s)	197, 223
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	5 cut(s)	9, 45, 57, 82, 175
CviKI_1	RGCY	5 cut(s)	9, 45, 57, 82, 175
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
DriI	GACNNNNNGTC	1 cut(s)	98
Eam1105I	GACNNNNNGTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	204
Ecl136II	GAGCTC	3 cut(s)	9, 82, 175
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	3 cut(s)	11, 84, 177
Eco53kI	GAGCTC	3 cut(s)	9, 82, 175
Eco88I	CYCGRG	1 cut(s)	77
EcoICRI	GAGCTC	3 cut(s)	9, 82, 175
EcoRII	CCWGG	2 cut(s)	46, 180
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	3 cut(s)	11, 84, 177
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	29
FaiI	YATR	2 cut(s)	27, 269
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	1 cut(s)	25
FauI	CCCGC	1 cut(s)	272
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	30, 43, 273
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	3 cut(s)	11, 84, 177
Fsp4HI	GCNGC	3 cut(s)	30, 43, 273
GluI	GCNGC	3 cut(s)	30, 43, 273
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	2 cut(s)	197, 223
Hin1I	GRCGYC	3 cut(s)	189, 234, 255
Hin1II	CATG	1 cut(s)	29
HinfI	GANTC	1 cut(s)	162
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	63, 86, 293
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	2 cut(s)	239, 260
HpyAV	CCTTC	1 cut(s)	147
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	2 cut(s)	29, 42
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	3 cut(s)	189, 234, 255
Hsp92II	CATG	1 cut(s)	29
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	7 cut(s)	33, 60, 167, 194, 234, 244, 258
Lsp1109I	GCAGC	2 cut(s)	41, 54
LweI	GCATC	2 cut(s)	238, 270
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MhlI	GDGCHC	3 cut(s)	11, 84, 177
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	2 cut(s)	188, 206
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	48, 182
MvaI	CCWGG	2 cut(s)	48, 182
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	29
PaeR7I	CTCGAG	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	3 cut(s)	162, 195, 204
PflFI	GACNNNGTC	2 cut(s)	191, 257
PkrI	GCNGC	3 cut(s)	31, 44, 274
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
Psp124BI	GAGCTC	3 cut(s)	11, 84, 177
Psp6I	CCWGG	2 cut(s)	46, 180
PspGI	CCWGG	2 cut(s)	46, 180
PspPI	GGNCC	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	77
PstI	CTGCAG	1 cut(s)	44
PsyI	GACNNNGTC	2 cut(s)	191, 257
SacI	GAGCTC	3 cut(s)	11, 84, 177
SatI	GCNGC	3 cut(s)	30, 43, 273
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	2 cut(s)	48, 182
SduI	GDGCHC	3 cut(s)	11, 84, 177
SetI	ASST	5 cut(s)	11, 84, 156, 177, 258
SfaNI	GCATC	2 cut(s)	238, 270
SfcI	CTRYAG	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	77
SlaI	CTCGAG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SsiI	CCGC	3 cut(s)	215, 265, 272
SstI	GAGCTC	3 cut(s)	11, 84, 177
StyD4I	CCNGG	2 cut(s)	46, 180
StyI	CCWWGG	1 cut(s)	150
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	5 cut(s)	78, 156, 165, 198, 207
TauI	GCSGC	1 cut(s)	275
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	29, 42
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	39
Tth111I	GACNNNGTC	2 cut(s)	191, 257
XceI	RCATGY	1 cut(s)	29
XhoI	CTCGAG	1 cut(s)	77
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.