Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

14050782 .. 14052496

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG160900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGCCATATCATCCCTGTCCTTGAGCTCGGGAAACGACTCGTCACCCACCAAAACTTCACTGTCACAATCTTCGTCGTCCCATTGCACACTTCCAAGGCCGAATCTGAACTCCTCGACGCATCTGCCTTCCCACATAGTCTGGACATCATCAAGCTCCCATCACCTGATATTTCTGGCCTTGTCGAACCTGATGCTGTCGTCGTCACACGCCTCACAGAAATGATGCGACAAGTACGACCCACGTTTCGTGCCGCCTTACACGACATGATCAACTTTCGTCATCGTTGCCCCACCATGCTCATCGTGGACCTATTCGGCACCGAATCTTTGCCCATTGCCGAGGAGTTTGGGATTCCAAAGTATGTGTACATTGCTTCCAATGCATGGTTCCTTTCTGTAATGATTTATTCTCCAACACTAGATGAGCAAGTCAAGGGTAAATTTGTTGACCTCAAAGATCCACTAGAAATTCCTGGATGTAGAAAATTATTCCCAGAACTTGATATAGTTGATGCTTTGCTAGACTGGAGTAATCAGCAATATGACGAGCACATGCTGATGGGAAGAGGAATCCCAAAGGGTGATGGAATTTTGATAAACATATGGGAAGAATTGGAGCCCAAGTCTCTAGCAGCACTAAGAGATGAGAACTTTTTGGGCAGATTTGTGAAAGTGCCGATCTTTCCAATTGGGCCATTGATGAGGCCCAATGTGTCTTCCATCCCGAGGGGTGATGTGTTTGATTGGCTAGATAAGCAACCCAATGAAACTGTGATTTACGTGTCCTTCGGAAGCGGTGGGGCCCTGTCGTATGAACAAATGGTTGAGCTAGCTTGGGGTTTGGAGATGAGTCAACAGAGGTTCGTTTGGGTCATTCGGCCACCTATCATATCATCTGCCAATGAAACATTTTTCACTGCAGGGAATCACAATGGCGAGGATGACAATCTAACTAAGTACTTGCCCAAGGGGTTTATGGGTCGAACCAAGGACATTGGTGTCAACTATCTAGTCCTTCTTACAATGTATAGTACCAAGAATATCATAGGGTTTCTAGCTGACCAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

357

Amino Acids

40.35

Weight (kDa)

5.17

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1001
AccB1I	GGYRCC	1 cut(s)	320
AccB7I	CCANNNNNTGG	1 cut(s)	387
AciI	CCGC	2 cut(s)	255, 798
AclWI	GGATC	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	881
AcsI	RAATTY	3 cut(s)	443, 471, 591
AfaI	GTAC	4 cut(s)	237, 371, 962, 1036
AfiI	CCNNNNNNNGG	2 cut(s)	387, 729
AflIII	ACRYGT	1 cut(s)	783
AjnI	CCWGG	1 cut(s)	475
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	5 cut(s)	28, 157, 832, 836, 1061
AluI	AGCT	5 cut(s)	28, 157, 832, 836, 1061
Alw21I	GWGCWC	2 cut(s)	30, 555
Alw26I	GTCTC	1 cut(s)	633
AlwI	GGATC	1 cut(s)	455
Ama87I	CYCGRG	2 cut(s)	29, 727
AoxI	GGCC	7 cut(s)	4, 99, 178, 695, 707, 804, 881
ApaI	GGGCCC	1 cut(s)	808
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	3 cut(s)	443, 471, 591
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
AspS9I	GGNCC	6 cut(s)	4, 310, 695, 708, 804, 805
AsuHPI	GGTGA	4 cut(s)	37, 156, 596, 746
AsuNHI	GCTAGC	1 cut(s)	832
AvaI	CYCGRG	2 cut(s)	29, 727
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	808
BanI	GGYRCC	1 cut(s)	320
BanII	GRGCYC	3 cut(s)	30, 624, 808
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	2 cut(s)	30, 555
BbvI	GCAGC	1 cut(s)	647
BccI	CCATC	4 cut(s)	169, 556, 581, 731
BcgI	CGANNNNNNTGC	4 cut(s)	107, 141, 176, 210
BciT130I	CCWGG	1 cut(s)	477
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	633
BfaI	CTAG	8 cut(s)	422, 467, 524, 632, 752, 833, 1013, 1058
BfmI	CTRYAG	1 cut(s)	921
BisI	GCNGC	2 cut(s)	255, 636
BlsI	GCNGC	2 cut(s)	256, 637
BmcAI	AGTACT	1 cut(s)	962
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	2 cut(s)	29, 727
BmgT120I	GGNCC	6 cut(s)	4, 310, 695, 708, 804, 805
BmiI	GGNNCC	5 cut(s)	322, 392, 621, 805, 806
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	4 cut(s)	131, 184, 216, 505
BmtI	GCTAGC	1 cut(s)	836
BpiI	GAAGAC	1 cut(s)	711
BpmI	CTGGAG	1 cut(s)	550
BpuEI	CTTGAG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	784
BsaBI	GATNNNNATC	1 cut(s)	948
BsaJI	CCNNGG	5 cut(s)	96, 342, 728, 969, 990
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	2 cut(s)	387, 729
Bse1I	ACTGG	1 cut(s)	533
Bse3DI	GCAATG	3 cut(s)	83, 336, 372
Bse8I	GATNNNNATC	1 cut(s)	948
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	5 cut(s)	96, 342, 728, 969, 990
BseGI	GGATG	4 cut(s)	12, 485, 723, 949
BseJI	GATNNNNATC	1 cut(s)	948
BseLI	CCNNNNNNNGG	2 cut(s)	387, 729
BseMI	GCAATG	3 cut(s)	83, 336, 372
BseNI	ACTGG	1 cut(s)	533
BseRI	GAGGAG	2 cut(s)	104, 359
BseSI	GKGCMC	1 cut(s)	808
BseXI	GCAGC	1 cut(s)	647
BshFI	GGCC	7 cut(s)	6, 101, 180, 697, 709, 806, 883
BshNI	GGYRCC	1 cut(s)	320
BsiHKAI	GWGCWC	2 cut(s)	30, 555
BsiHKCI	CYCGRG	2 cut(s)	29, 727
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	387, 729
BsmAI	GTCTC	1 cut(s)	633
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	7 cut(s)	6, 101, 180, 697, 709, 806, 883
BsoBI	CYCGRG	2 cut(s)	29, 727
Bsp120I	GGGCCC	1 cut(s)	804
Bsp1286I	GDGCHC	4 cut(s)	30, 555, 624, 808
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	3 cut(s)	270, 460, 681
BspACI	CCGC	2 cut(s)	255, 798
BspANI	GGCC	7 cut(s)	6, 101, 180, 697, 709, 806, 883
BspLI	GGNNCC	5 cut(s)	322, 392, 621, 805, 806
BspMAI	CTGCAG	1 cut(s)	925
BspOI	GCTAGC	1 cut(s)	836
BspPI	GGATC	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	320
BsrDI	GCAATG	3 cut(s)	83, 336, 372
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	533
BssECI	CCNNGG	5 cut(s)	96, 342, 728, 969, 990
BssMI	GATC	3 cut(s)	270, 460, 681
BssT1I	CCWWGG	3 cut(s)	96, 969, 990
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	2 cut(s)	64, 775
Bst6I	CTCTTC	1 cut(s)	562
BstAUI	TGTACA	1 cut(s)	369
BstBAI	YACGTR	1 cut(s)	784
BstC8I	GCNNGC	1 cut(s)	834
BstDEI	CTNAG	2 cut(s)	641, 957
BstF5I	GGATG	4 cut(s)	12, 485, 723, 949
BstKTI	GATC	3 cut(s)	273, 463, 684
BstMAI	GTCTC	1 cut(s)	633
BstMBI	GATC	3 cut(s)	270, 460, 681
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 757
BstNI	CCWGG	1 cut(s)	477
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	921
BstSLI	GKGCMC	1 cut(s)	808
BstV1I	GCAGC	1 cut(s)	647
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	7 cut(s)	6, 101, 180, 697, 709, 806, 883
BtsCI	GGATG	4 cut(s)	12, 485, 723, 949
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	2 cut(s)	60, 918
Cac8I	GCNNGC	1 cut(s)	834
Cfr13I	GGNCC	6 cut(s)	4, 310, 695, 708, 804, 805
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	4 cut(s)	236, 370, 961, 1035
CviAII	CATG	4 cut(s)	268, 298, 387, 556
CviQI	GTAC	4 cut(s)	236, 370, 961, 1035
DdeI	CTNAG	2 cut(s)	641, 957
DpnI	GATC	3 cut(s)	272, 462, 683
DpnII	GATC	3 cut(s)	270, 460, 681
DrdI	GACNNNNNNGTC	1 cut(s)	1001
DseDI	GACNNNNNNGTC	1 cut(s)	1001
EaeI	YGGCCR	1 cut(s)	881
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	3 cut(s)	96, 969, 990
Eco24I	GRGCYC	3 cut(s)	30, 624, 808
Eco47I	GGWCC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	28
Eco88I	CYCGRG	2 cut(s)	29, 727
EcoICRI	GAGCTC	1 cut(s)	28
EcoO109I	RGGNCCY	2 cut(s)	804, 805
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	3 cut(s)	96, 969, 990
EcoT22I	ATGCAT	1 cut(s)	388
EcoT38I	GRGCYC	3 cut(s)	30, 624, 808
ErhI	CCWWGG	3 cut(s)	96, 969, 990
FaeI	CATG	4 cut(s)	271, 301, 390, 559
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	4 cut(s)	267, 297, 386, 555
FauNDI	CATATG	1 cut(s)	605
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	255, 636
FokI	GGATG	3 cut(s)	492, 710, 956
FriOI	GRGCYC	3 cut(s)	30, 624, 808
Fsp4HI	GCNGC	2 cut(s)	255, 636
FspBI	CTAG	8 cut(s)	422, 467, 524, 632, 752, 833, 1013, 1058
GluI	GCNGC	2 cut(s)	255, 636
GsuI	CTGGAG	1 cut(s)	550
HaeIII	GGCC	7 cut(s)	6, 101, 180, 697, 709, 806, 883
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	271, 301, 390, 559
HincII	GTYRAC	3 cut(s)	451, 857, 1006
HindII	GTYRAC	3 cut(s)	451, 857, 1006
HinfI	GANTC	7 cut(s)	39, 104, 326, 355, 573, 853, 928
HphI	GGTGA	4 cut(s)	37, 156, 596, 746
Hpy166II	GTNNAC	5 cut(s)	310, 370, 451, 857, 1006
Hpy188I	TCNGA	2 cut(s)	109, 794
Hpy188III	TCNNGA	3 cut(s)	31, 143, 727
Hpy8I	GTNNAC	5 cut(s)	310, 370, 451, 857, 1006
Hpy99I	CGWCG	3 cut(s)	80, 122, 206
HpyAV	CCTTC	3 cut(s)	139, 799, 1028
HpyCH4III	ACNGT	2 cut(s)	64, 775
HpyCH4IV	ACGT	2 cut(s)	245, 783
HpyCH4V	TGCA	3 cut(s)	88, 386, 923
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 757
HpyF3I	CTNAG	2 cut(s)	641, 957
HpySE526I	ACGT	2 cut(s)	245, 783
Hsp92II	CATG	4 cut(s)	271, 301, 390, 559
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	270, 460, 681
LmnI	GCTCC	2 cut(s)	162, 619
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	4 cut(s)	131, 184, 216, 505
MaeI	CTAG	8 cut(s)	422, 467, 524, 632, 752, 833, 1013, 1058
MaeII	ACGT	2 cut(s)	245, 783
MaeIII	GTNAC	3 cut(s)	43, 64, 205
MalI	GATC	3 cut(s)	272, 462, 683
MboI	GATC	3 cut(s)	270, 460, 681
MboII	GAAGA	4 cut(s)	64, 579, 623, 711
MfeI	CAATTG	1 cut(s)	690
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	4 cut(s)	30, 555, 624, 808
MluCI	AATT	6 cut(s)	443, 471, 488, 591, 614, 690
MlyI	GAGTC	2 cut(s)	33, 862
MmeI	TCCRAC	1 cut(s)	440
MnlI	CCTC	9 cut(s)	125, 224, 337, 464, 563, 699, 723, 855, 934
Mph1103I	ATGCAT	1 cut(s)	388
MslI	CAYNNNNRTG	2 cut(s)	221, 560
MspR9I	CCNGG	1 cut(s)	477
MunI	CAATTG	1 cut(s)	690
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	383, 757
NdeI	CATATG	1 cut(s)	605
NdeII	GATC	3 cut(s)	270, 460, 681
NheI	GCTAGC	1 cut(s)	832
NlaIII	CATG	4 cut(s)	271, 301, 390, 559
NlaIV	GGNNCC	5 cut(s)	322, 392, 621, 805, 806
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	3 cut(s)	43, 64, 205
NsiI	ATGCAT	1 cut(s)	388
NspI	RCATGY	1 cut(s)	559
PfeI	GAWTC	5 cut(s)	104, 326, 355, 573, 928
PflMI	CCANNNNNTGG	1 cut(s)	387
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	2 cut(s)	256, 637
PleI	GAGTC	2 cut(s)	33, 861
PpsI	GAGTC	2 cut(s)	33, 861
Ppu21I	YACGTR	1 cut(s)	784
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	5 cut(s)	322, 392, 621, 805, 806
PspOMI	GGGCCC	1 cut(s)	804
PspPI	GGNCC	6 cut(s)	4, 310, 695, 708, 804, 805
PstI	CTGCAG	1 cut(s)	925
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	4 cut(s)	237, 371, 962, 1036
RsaNI	GTAC	4 cut(s)	236, 370, 961, 1035
RseI	CAYNNNNRTG	2 cut(s)	221, 560
SacI	GAGCTC	1 cut(s)	30
SatI	GCNGC	2 cut(s)	255, 636
Sau3AI	GATC	3 cut(s)	270, 460, 681
Sau96I	GGNCC	6 cut(s)	4, 310, 695, 708, 804, 805
ScaI	AGTACT	1 cut(s)	962
SchI	GAGTC	2 cut(s)	33, 862
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	4 cut(s)	30, 555, 624, 808
SfaNI	GCATC	4 cut(s)	131, 184, 216, 505
SfcI	CTRYAG	1 cut(s)	921
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	2 cut(s)	221, 560
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	6 cut(s)	443, 471, 488, 591, 614, 690
SsiI	CCGC	2 cut(s)	255, 798
SspMI	CTAG	8 cut(s)	422, 467, 524, 632, 752, 833, 1013, 1058
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	475
StyI	CCWWGG	3 cut(s)	96, 969, 990
TaaI	ACNGT	2 cut(s)	64, 775
TaiI	ACGT	2 cut(s)	248, 786
TaqI	TCGA	3 cut(s)	117, 186, 985
TasI	AATT	6 cut(s)	443, 471, 488, 591, 614, 690
TatI	WGTACW	2 cut(s)	369, 960
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	5 cut(s)	104, 326, 355, 573, 928
TscAI	CASTG	2 cut(s)	67, 925
TseFI	GTSAC	3 cut(s)	43, 64, 205
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	3 cut(s)	43, 64, 205
TspDTI	ATGAA	3 cut(s)	783, 831, 921
TspRI	CASTG	2 cut(s)	67, 925
Van91I	CCANNNNNTGG	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	3 cut(s)	443, 471, 591
XceI	RCATGY	1 cut(s)	559
XcmI	CCANNNNNNNNNTGG	2 cut(s)	304, 976
XspI	CTAG	8 cut(s)	422, 467, 524, 632, 752, 833, 1013, 1058
ZrmI	AGTACT	1 cut(s)	962
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.