Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

12754731 .. 12757338

Gene Structure 2608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1153900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGCTCAAAGCCACATGCAGCCATACTTTGCAGCCCAGGCCTGGGCCACCTCATCCCCGTCCTCGAGCTCGCAAAAAGACTTGTCATCCACCGAAACTTCACCGTGACGATCTTCGCCATCCCATCTCCTACTTCCAAGGTTGAGTCTGAGCTCCTCGAGGCAGCCACCACCCCCAAGTTTTGTGACATTGTTGACCTCCCACCGCCCGACATTTCCGGCTGTGTTGGCCCTGAAGCTACGGCCTTTGCACTCCTTGCAGTCATGATGCGTGAAGTACGACCTGCGTTTCGTGATGGGATTTTGATGAATACATGGGAGGACTTGGAGCACAAAACATTACACGCATTACGGGACGAGGCACTCTTGGGTAGAGTGGCTAAGGTGCCAGTTTATCCTATTGGACCATTGACGAGGCCGGTCCAATTGGCCGGTTGCCGGTCCAAGGGAGGAGGGCTTATGATAGAAATGGCTTGGGGGTTGGAGTTGAGTCAACAAAGATTCATTTGGGTTGTACGACCACCATCTAAATCCGCAGATGCTGTTTTTTTACACTTTAGATCAAAAGTGCTACCATTGAAGACTGTGGTTGGGAGAGAAGAGATAGAGGAAATGATGAGAAAGATCATGGTGGACAAAAATGGTCAGGCAATAAGAGGTAGGGTTAAAGAGCTTAAATTAAACGCTGCCAAAGGATTGAGCGTAGGTTGTTCATCATATAATGCACTGTCTCAAATATCAAGTGGCAATCAAATAAAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

255

Amino Acids

27.78

Weight (kDa)

9.3

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	385
AciI	CCGC	2 cut(s)	206, 534
AcoI	YGGCCR	1 cut(s)	429
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	279, 516
AfiI	CCNNNNNNNGG	4 cut(s)	43, 44, 438, 445
AgsI	TTSAA	1 cut(s)	580
AjnI	CCWGG	2 cut(s)	37, 42
AluBI	AGCT	5 cut(s)	6, 70, 154, 239, 673
AluI	AGCT	5 cut(s)	6, 70, 154, 239, 673
Alw21I	GWGCWC	4 cut(s)	8, 72, 156, 333
Alw26I	GTCTC	1 cut(s)	735
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	2 cut(s)	65, 158
AoxI	GGCC	6 cut(s)	40, 46, 229, 243, 416, 429
ApeKI	GCWGC	4 cut(s)	20, 33, 164, 686
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AspS9I	GGNCC	5 cut(s)	46, 230, 404, 421, 441
AsuHPI	GGTGA	1 cut(s)	94
AvaI	CYCGRG	2 cut(s)	65, 158
AvaII	GGWCC	3 cut(s)	404, 421, 441
BanI	GGYRCC	1 cut(s)	385
BanII	GRGCYC	3 cut(s)	8, 72, 156
BbsI	GAAGAC	1 cut(s)	587
Bbv12I	GWGCWC	4 cut(s)	8, 72, 156, 333
BbvI	GCAGC	4 cut(s)	32, 45, 176, 673
BccI	CCATC	4 cut(s)	128, 133, 290, 532
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	2 cut(s)	39, 44
BcoDI	GTCTC	1 cut(s)	735
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	4 cut(s)	21, 34, 165, 687
BlsI	GCNGC	4 cut(s)	22, 35, 166, 688
Bme1390I	CCNGG	2 cut(s)	39, 44
Bme18I	GGWCC	3 cut(s)	404, 421, 441
BmeT110I	CYCGRG	2 cut(s)	65, 158
BmgT120I	GGNCC	5 cut(s)	46, 230, 404, 421, 441
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	2 cut(s)	39, 44
BmsI	GCATC	2 cut(s)	258, 529
BpiI	GAAGAC	1 cut(s)	587
Bpu10I	CCTNAGC	1 cut(s)	381
BsaJI	CCNNGG	4 cut(s)	37, 43, 138, 444
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 44, 438, 445
Bse118I	RCCGGY	3 cut(s)	418, 431, 438
Bse1I	ACTGG	1 cut(s)	389
BseBI	CCWGG	2 cut(s)	39, 44
BseDI	CCNNGG	4 cut(s)	37, 43, 138, 444
BseGI	GGATG	3 cut(s)	54, 87, 120
BseLI	CCNNNNNNNGG	4 cut(s)	43, 44, 438, 445
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	2 cut(s)	146, 465
BseXI	GCAGC	4 cut(s)	32, 45, 176, 673
BshFI	GGCC	6 cut(s)	42, 48, 231, 245, 418, 431
BshNI	GGYRCC	1 cut(s)	385
BsiHKAI	GWGCWC	4 cut(s)	8, 72, 156, 333
BsiHKCI	CYCGRG	2 cut(s)	65, 158
BsiSI	CCGG	4 cut(s)	219, 419, 432, 439
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	4 cut(s)	43, 44, 438, 445
BsmAI	GTCTC	1 cut(s)	735
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	6 cut(s)	42, 48, 231, 245, 418, 431
BsoBI	CYCGRG	2 cut(s)	65, 158
Bsp1286I	GDGCHC	4 cut(s)	8, 72, 156, 333
Bsp143I	GATC	3 cut(s)	111, 560, 624
BspACI	CCGC	2 cut(s)	206, 534
BspANI	GGCC	6 cut(s)	42, 48, 231, 245, 418, 431
BspCNI	CTCAG	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	385
BsrFI	RCCGGY	3 cut(s)	418, 431, 438
BsrI	ACTGG	1 cut(s)	389
BssAI	RCCGGY	3 cut(s)	418, 431, 438
BssECI	CCNNGG	4 cut(s)	37, 43, 138, 444
BssMI	GATC	3 cut(s)	111, 560, 624
BssT1I	CCWWGG	2 cut(s)	138, 444
Bst2UI	CCWGG	2 cut(s)	39, 44
Bst4CI	ACNGT	3 cut(s)	106, 586, 729
Bst6I	CTCTTC	1 cut(s)	594
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	150, 381
BstF5I	GGATG	3 cut(s)	54, 87, 120
BstKTI	GATC	3 cut(s)	114, 563, 627
BstMAI	GTCTC	1 cut(s)	735
BstMBI	GATC	3 cut(s)	111, 560, 624
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 228, 257
BstNI	CCWGG	2 cut(s)	39, 44
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	2 cut(s)	37, 42
BstV1I	GCAGC	4 cut(s)	32, 45, 176, 673
BstV2I	GAAGAC	1 cut(s)	587
BsuRI	GGCC	6 cut(s)	42, 48, 231, 245, 418, 431
BtsCI	GGATG	3 cut(s)	54, 87, 120
BtsIMutI	CAGTG	1 cut(s)	725
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	542
CciI	TCATGA	1 cut(s)	264
Cfr10I	RCCGGY	3 cut(s)	418, 431, 438
Cfr13I	GGNCC	5 cut(s)	46, 230, 404, 421, 441
Csp6I	GTAC	2 cut(s)	278, 515
CviAII	CATG	4 cut(s)	17, 265, 315, 628
CviQI	GTAC	2 cut(s)	278, 515
DdeI	CTNAG	2 cut(s)	150, 381
DpnI	GATC	3 cut(s)	113, 562, 626
DpnII	GATC	3 cut(s)	111, 560, 624
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Ecl136II	GAGCTC	3 cut(s)	6, 70, 154
Eco130I	CCWWGG	2 cut(s)	138, 444
Eco147I	AGGCCT	1 cut(s)	42
Eco24I	GRGCYC	3 cut(s)	8, 72, 156
Eco47I	GGWCC	3 cut(s)	404, 421, 441
Eco53kI	GAGCTC	3 cut(s)	6, 70, 154
Eco57I	CTGAAG	1 cut(s)	255
Eco88I	CYCGRG	2 cut(s)	65, 158
EcoICRI	GAGCTC	3 cut(s)	6, 70, 154
EcoRII	CCWGG	2 cut(s)	37, 42
EcoT14I	CCWWGG	2 cut(s)	138, 444
EcoT38I	GRGCYC	3 cut(s)	8, 72, 156
ErhI	CCWWGG	2 cut(s)	138, 444
FaeI	CATG	4 cut(s)	20, 268, 318, 631
FaiI	YATR	8 cut(s)	18, 26, 266, 316, 461, 629, 718, 720
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	4 cut(s)	16, 264, 314, 627
Fnu4HI	GCNGC	4 cut(s)	21, 34, 165, 687
FokI	GGATG	3 cut(s)	41, 74, 107
FriOI	GRGCYC	3 cut(s)	8, 72, 156
Fsp4HI	GCNGC	4 cut(s)	21, 34, 165, 687
GluI	GCNGC	4 cut(s)	21, 34, 165, 687
HaeIII	GGCC	6 cut(s)	42, 48, 231, 245, 418, 431
HapII	CCGG	4 cut(s)	219, 419, 432, 439
Hin1II	CATG	4 cut(s)	20, 268, 318, 631
HincII	GTYRAC	2 cut(s)	196, 494
HindII	GTYRAC	2 cut(s)	196, 494
HinfI	GANTC	3 cut(s)	146, 490, 501
HpaII	CCGG	4 cut(s)	219, 419, 432, 439
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	3 cut(s)	196, 494, 634
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	2 cut(s)	265, 293
Hpy8I	GTNNAC	3 cut(s)	196, 494, 634
HpyCH4III	ACNGT	3 cut(s)	106, 586, 729
HpyCH4V	TGCA	5 cut(s)	20, 33, 251, 260, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 228, 257
HpyF3I	CTNAG	2 cut(s)	150, 381
Hsp92II	CATG	4 cut(s)	20, 268, 318, 631
Kzo9I	GATC	3 cut(s)	111, 560, 624
LmnI	GCTCC	2 cut(s)	159, 328
Lsp1109I	GCAGC	4 cut(s)	32, 45, 176, 673
LweI	GCATC	2 cut(s)	258, 529
MaeIII	GTNAC	2 cut(s)	106, 185
MalI	GATC	3 cut(s)	113, 562, 626
MboI	GATC	3 cut(s)	111, 560, 624
MboII	GAAGA	3 cut(s)	106, 592, 611
MfeI	CAATTG	1 cut(s)	425
MhlI	GDGCHC	4 cut(s)	8, 72, 156, 333
MluCI	AATT	2 cut(s)	425, 677
MlyI	GAGTC	2 cut(s)	155, 499
MmeI	TCCRAC	1 cut(s)	462
MseI	TTAA	3 cut(s)	666, 675, 680
MspI	CCGG	4 cut(s)	219, 419, 432, 439
MspR9I	CCNGG	2 cut(s)	39, 44
MunI	CAATTG	1 cut(s)	425
MvaI	CCWGG	2 cut(s)	39, 44
MwoI	GCNNNNNNNGC	3 cut(s)	39, 228, 257
NdeII	GATC	3 cut(s)	111, 560, 624
NlaIII	CATG	4 cut(s)	20, 268, 318, 631
NlaIV	GGNNCC	1 cut(s)	387
NmuCI	GTSAC	2 cut(s)	106, 185
NspI	RCATGY	1 cut(s)	20
PaeR7I	CTCGAG	2 cut(s)	65, 158
PagI	TCATGA	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	501
PkrI	GCNGC	4 cut(s)	22, 35, 166, 688
PleI	GAGTC	2 cut(s)	154, 498
PpsI	GAGTC	2 cut(s)	154, 498
Psp124BI	GAGCTC	3 cut(s)	8, 72, 156
Psp6I	CCWGG	2 cut(s)	37, 42
PspGI	CCWGG	2 cut(s)	37, 42
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	5 cut(s)	46, 230, 404, 421, 441
PspXI	VCTCGAGB	2 cut(s)	65, 158
PstNI	CAGNNNCTG	1 cut(s)	542
RsaI	GTAC	2 cut(s)	279, 516
RsaNI	GTAC	2 cut(s)	278, 515
SacI	GAGCTC	3 cut(s)	8, 72, 156
SaqAI	TTAA	3 cut(s)	666, 675, 680
SatI	GCNGC	4 cut(s)	21, 34, 165, 687
Sau3AI	GATC	3 cut(s)	111, 560, 624
Sau96I	GGNCC	5 cut(s)	46, 230, 404, 421, 441
SchI	GAGTC	2 cut(s)	155, 499
ScrFI	CCNGG	2 cut(s)	39, 44
SduI	GDGCHC	4 cut(s)	8, 72, 156, 333
SfaNI	GCATC	2 cut(s)	258, 529
Sfr274I	CTCGAG	2 cut(s)	65, 158
SinI	GGWCC	3 cut(s)	404, 421, 441
SlaI	CTCGAG	2 cut(s)	65, 158
SmlI	CTYRAG	2 cut(s)	65, 158
SmoI	CTYRAG	2 cut(s)	65, 158
Sse9I	AATT	2 cut(s)	425, 677
SseBI	AGGCCT	1 cut(s)	42
SsiI	CCGC	2 cut(s)	206, 534
SstI	GAGCTC	3 cut(s)	8, 72, 156
StuI	AGGCCT	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	37, 42
StyI	CCWWGG	2 cut(s)	138, 444
TaaI	ACNGT	3 cut(s)	106, 586, 729
TaqI	TCGA	2 cut(s)	66, 159
TasI	AATT	2 cut(s)	425, 677
TfiI	GAWTC	1 cut(s)	501
Tru1I	TTAA	3 cut(s)	666, 675, 680
Tru9I	TTAA	3 cut(s)	666, 675, 680
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	2 cut(s)	106, 185
TseI	GCWGC	4 cut(s)	20, 33, 164, 686
Tsp45I	GTSAC	2 cut(s)	106, 185
TspDTI	ATGAA	3 cut(s)	323, 493, 702
TspRI	CASTG	1 cut(s)	732
VpaK11BI	GGWCC	3 cut(s)	404, 421, 441
XceI	RCATGY	1 cut(s)	20
XhoI	CTCGAG	2 cut(s)	65, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.