Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

12747832 .. 12748457

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1153700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCTGGACCAGATTGACCAACAATATTTGGAATATGTAAGGATAGGAACTAATTTCTCGAAGAGTGATGGGATTTTGATGAACAGATGGGAAGACTTGGAGCACAAAACAATAGATGCGTTACGGGATGAGGGACTCTTGGGCAGAGTGGCTAAGGTGCCAGTTTATCCCATTGGACCATTGACGAGGCAGGTCCAATCAGCCGGTTCAACCTCAACCAGTATAAGGGATGAGGGCTTGTTTAATTGGCTAGACAAGCAACCTTGTGAATTTGTGATATTTGTGTCATTAGGGAGTGGAGGGACTGTGTCCTTGGAGCAGATGACAGAAATGGCTTGGGGTTTGGAATTGAGTCAACAAAGATTCATTTGGGTTGTACGACCACCGGCTAGATCCGCAGATGCTGATTTTTTCACTTCAGTATTTGATAAATTATTGATATTGTGTTACAATCGATACCTTCACTTACATTTAGTAACTTTATTTAAGGAAATCAAGACGATGACCCATCAACCTATTTGCCCAAAGGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

179

Amino Acids

20.37

Weight (kDa)

5.55

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	157
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	210
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	387
AlwNI	CAGNNNCTG	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	7, 176, 193
AvaII	GGWCC	3 cut(s)	7, 176, 193
BanI	GGYRCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	105
BccI	CCATC	3 cut(s)	62, 81, 516
BfaI	CTAG	2 cut(s)	251, 390
BfuAI	ACCTGC	1 cut(s)	181
Bme18I	GGWCC	3 cut(s)	7, 176, 193
BmgT120I	GGNCC	3 cut(s)	7, 176, 193
BmiI	GGNNCC	1 cut(s)	159
BmsI	GCATC	2 cut(s)	106, 391
BpiI	GAAGAC	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	454
BsaJI	CCNNGG	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse118I	RCCGGY	2 cut(s)	203, 385
Bse1I	ACTGG	2 cut(s)	161, 219
BseCI	ATCGAT	1 cut(s)	454
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	2 cut(s)	133, 235
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	161, 219
BshNI	GGYRCC	1 cut(s)	157
BshVI	ATCGAT	1 cut(s)	454
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	204, 386
BslFI	GGGAC	2 cut(s)	147, 316
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmFI	GGGAC	2 cut(s)	147, 316
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	392
BspACI	CCGC	1 cut(s)	396
BspDI	ATCGAT	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	159
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	157
BsrFI	RCCGGY	2 cut(s)	203, 385
BsrI	ACTGG	2 cut(s)	161, 219
BssAI	RCCGGY	2 cut(s)	203, 385
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	133, 235
BstKTI	GATC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 395
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	392
Bsu15I	ATCGAT	1 cut(s)	454
BsuTUI	ATCGAT	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	133, 235
BveI	ACCTGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	404
Cfr10I	RCCGGY	2 cut(s)	203, 385
Cfr13I	GGNCC	3 cut(s)	7, 176, 193
ClaI	ATCGAT	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	377
CviJI	RGCY	6 cut(s)	152, 203, 237, 250, 335, 389
CviKI_1	RGCY	6 cut(s)	152, 203, 237, 250, 335, 389
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	3 cut(s)	7, 176, 193
Eco57I	CTGAAG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaiI	YATR	2 cut(s)	36, 224
FaqI	GGGAC	2 cut(s)	147, 316
FokI	GGATG	2 cut(s)	140, 242
FspBI	CTAG	2 cut(s)	251, 390
HapII	CCGG	2 cut(s)	204, 386
HincII	GTYRAC	1 cut(s)	356
HindII	GTYRAC	1 cut(s)	356
HinfI	GANTC	4 cut(s)	135, 352, 363, 530
HpaII	CCGG	2 cut(s)	204, 386
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188III	TCNNGA	3 cut(s)	58, 496, 534
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 395
HpyF3I	CTNAG	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	392
LmnI	GCTCC	2 cut(s)	100, 316
LpnPI	CCDG	6 cut(s)	23, 174, 176, 217, 232, 399
LweI	GCATC	2 cut(s)	106, 391
MaeI	CTAG	2 cut(s)	251, 390
MaeIII	GTNAC	3 cut(s)	120, 446, 475
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	2 cut(s)	73, 104
MflI	RGATCY	1 cut(s)	392
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	5 cut(s)	52, 244, 269, 347, 431
MlyI	GAGTC	2 cut(s)	129, 361
MnlI	CCTC	5 cut(s)	124, 180, 223, 226, 293
MseI	TTAA	2 cut(s)	243, 486
MspI	CCGG	2 cut(s)	204, 386
MwoI	GCNNNNNNNGC	2 cut(s)	256, 395
NdeII	GATC	1 cut(s)	392
NlaIV	GGNNCC	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	363, 530
PflFI	GACNNNGTC	1 cut(s)	307
PleI	GAGTC	2 cut(s)	129, 360
PpsI	GAGTC	2 cut(s)	129, 360
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	3 cut(s)	7, 176, 193
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	392
PsyI	GACNNNGTC	1 cut(s)	307
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SaqAI	TTAA	2 cut(s)	243, 486
Sau3AI	GATC	1 cut(s)	392
Sau96I	GGNCC	3 cut(s)	7, 176, 193
SchI	GAGTC	2 cut(s)	129, 361
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	6 cut(s)	159, 195, 215, 265, 462, 517
SfaNI	GCATC	2 cut(s)	106, 391
SinI	GGWCC	3 cut(s)	7, 176, 193
Sse9I	AATT	5 cut(s)	52, 244, 269, 347, 431
SsiI	CCGC	1 cut(s)	396
SspI	AATATT	1 cut(s)	26
SspMI	CTAG	2 cut(s)	251, 390
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	2 cut(s)	59, 454
TasI	AATT	5 cut(s)	52, 244, 269, 347, 431
TfiI	GAWTC	2 cut(s)	363, 530
Tru1I	TTAA	2 cut(s)	243, 486
Tru9I	TTAA	2 cut(s)	243, 486
TspDTI	ATGAA	2 cut(s)	95, 355
Tth111I	GACNNNGTC	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	7, 176, 193
XapI	RAATTY	1 cut(s)	269
XspI	CTAG	2 cut(s)	251, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.