Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

13632893 .. 13633531

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG160400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAGAGCTCAAATCATCAACAACATGCAGCACTGCTCTGCAGCCCAGGAATGGGCCATCTGATCATCCCTTTGCTCGAGCTCGGAAAGCGACTTGTCGTCCACCAAAACTTCATCGGCACAATCTTCGTCGTCCCTTCCAACACTTCCAAGGTCGAAAGACTCGAAACCGAGCTCCTCCAGGCAGACGCCGTCCTCGAAACCATCGAACTTCCGCCACCAGACATTTCCGGCGTCGCTAACCCTGATGCTGACGTCGTCACCCGCATAGCGGCAATGATGCGAGAAGTACGACCAGCGTTTCGGTCAGCTCTGCACGACATGAAGCTCTGTCCTACCATGCTCATTGTGGACTTCTTCGGCACAGAATCTCTGCCCATTGCCGAAGAGTTTGGGATTTCCAAGTACGTCTACATTGCTTCCAATGCATGGTTCCTTTCTCTCATGGTTTATTCTCCTACATTGGATGAAGAAGTGAAAGGAGAATTCGTTGACGAGAAAGAGCCGCTGAAAATCCCTGGTTGTAGATCTGTACATCCCCAAATCGACATCGTCGACGGCCTGCAGGACAGAACTAGCCAACAATACAACGAGCATTTGGGGATCGCCAGACGGCTCTTGCTTCAAGTGATGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

212

Amino Acids

23.66

Weight (kDa)

4.98

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccI	GTMKAC	2 cut(s)	411, 555
AciI	CCGC	4 cut(s)	215, 265, 272, 506
AclWI	GGATC	1 cut(s)	611
AcsI	RAATTY	1 cut(s)	485
AcyI	GRCGYC	3 cut(s)	189, 234, 255
AfaI	GTAC	3 cut(s)	291, 407, 534
AfiI	CCNNNNNNNGG	4 cut(s)	52, 53, 271, 429
AgsI	TTSAA	1 cut(s)	626
AhdI	GACNNNNNGTC	1 cut(s)	98
AjnI	CCWGG	3 cut(s)	46, 180, 517
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	5 cut(s)	9, 82, 175, 311, 328
AluI	AGCT	5 cut(s)	9, 82, 175, 311, 328
Alw21I	GWGCWC	3 cut(s)	11, 84, 177
AlwI	GGATC	1 cut(s)	611
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	2 cut(s)	55, 559
ApeKI	GCWGC	2 cut(s)	29, 42
ApoI	RAATTY	1 cut(s)	485
ArsI	GACNNNNNNTTYG	2 cut(s)	285, 317
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	77
BanII	GRGCYC	3 cut(s)	11, 84, 177
Bbv12I	GWGCWC	3 cut(s)	11, 84, 177
BbvI	GCAGC	2 cut(s)	41, 54
BccI	CCATC	3 cut(s)	66, 212, 625
BceAI	ACGGC	3 cut(s)	176, 574, 629
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	3 cut(s)	48, 182, 519
BclI	TGATCA	1 cut(s)	63
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	2 cut(s)	40, 563
BglII	AGATCT	1 cut(s)	527
BisI	GCNGC	4 cut(s)	30, 43, 273, 506
BlsI	GCNGC	4 cut(s)	31, 44, 274, 507
Bme1390I	CCNGG	3 cut(s)	48, 182, 519
BmeRI	GACNNNNNGTC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	3 cut(s)	48, 182, 519
BmsI	GCATC	2 cut(s)	238, 270
BpmI	CTGGAG	1 cut(s)	164
BsaHI	GRCGYC	3 cut(s)	189, 234, 255
BsaJI	CCNNGG	3 cut(s)	46, 150, 517
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 53, 271, 429
Bse3DI	GCAATG	3 cut(s)	282, 378, 414
BseBI	CCWGG	3 cut(s)	48, 182, 519
BseDI	CCNNGG	3 cut(s)	46, 150, 517
BseGI	GGATG	3 cut(s)	66, 472, 535
BseLI	CCNNNNNNNGG	4 cut(s)	52, 53, 271, 429
BseMI	GCAATG	3 cut(s)	282, 378, 414
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	41, 54
BsgI	GTGCAG	1 cut(s)	299
BshFI	GGCC	2 cut(s)	57, 561
BsiHKAI	GWGCWC	3 cut(s)	11, 84, 177
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	4 cut(s)	52, 53, 271, 429
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	57, 561
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	3 cut(s)	11, 84, 177
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	3 cut(s)	63, 527, 603
BspACI	CCGC	4 cut(s)	215, 265, 272, 506
BspANI	GGCC	2 cut(s)	57, 561
BspLI	GGNNCC	1 cut(s)	434
BspMAI	CTGCAG	2 cut(s)	44, 567
BspPI	GGATC	1 cut(s)	611
BsrDI	GCAATG	3 cut(s)	282, 378, 414
BsrGI	TGTACA	1 cut(s)	532
BssECI	CCNNGG	3 cut(s)	46, 150, 517
BssMI	GATC	3 cut(s)	63, 527, 603
BssNI	GRCGYC	3 cut(s)	189, 234, 255
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	3 cut(s)	48, 182, 519
Bst6I	CTCTTC	1 cut(s)	381
BstACI	GRCGYC	3 cut(s)	189, 234, 255
BstAUI	TGTACA	1 cut(s)	532
BstC8I	GCNNGC	1 cut(s)	563
BstF5I	GGATG	3 cut(s)	66, 472, 535
BstKTI	GATC	3 cut(s)	66, 530, 606
BstMBI	GATC	3 cut(s)	63, 527, 603
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 425
BstNI	CCWGG	3 cut(s)	48, 182, 519
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	3 cut(s)	46, 180, 517
BstSFI	CTRYAG	2 cut(s)	40, 563
BstV1I	GCAGC	2 cut(s)	41, 54
BstX2I	RGATCY	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	527
BsuRI	GGCC	2 cut(s)	57, 561
BtsCI	GGATG	3 cut(s)	66, 472, 535
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	2 cut(s)	197, 223
Csp6I	GTAC	3 cut(s)	290, 406, 533
CviAII	CATG	5 cut(s)	26, 322, 340, 429, 445
CviQI	GTAC	3 cut(s)	290, 406, 533
DpnI	GATC	3 cut(s)	65, 529, 605
DpnII	GATC	3 cut(s)	63, 527, 603
DriI	GACNNNNNGTC	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	381
Eam1105I	GACNNNNNGTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	381
EciI	GGCGGA	1 cut(s)	204
Ecl136II	GAGCTC	3 cut(s)	9, 82, 175
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	3 cut(s)	11, 84, 177
Eco53kI	GAGCTC	3 cut(s)	9, 82, 175
Eco88I	CYCGRG	1 cut(s)	77
EcoICRI	GAGCTC	3 cut(s)	9, 82, 175
EcoRI	GAATTC	1 cut(s)	485
EcoRII	CCWGG	3 cut(s)	46, 180, 517
EcoT14I	CCWWGG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	430
EcoT38I	GRGCYC	3 cut(s)	11, 84, 177
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	5 cut(s)	29, 325, 343, 432, 448
FaiI	YATR	6 cut(s)	27, 269, 323, 341, 430, 446
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	5 cut(s)	25, 321, 339, 428, 444
FauI	CCCGC	1 cut(s)	272
FbaI	TGATCA	1 cut(s)	63
FblI	GTMKAC	2 cut(s)	411, 555
Fnu4HI	GCNGC	4 cut(s)	30, 43, 273, 506
FokI	GGATG	3 cut(s)	53, 479, 522
FriOI	GRGCYC	3 cut(s)	11, 84, 177
Fsp4HI	GCNGC	4 cut(s)	30, 43, 273, 506
FspBI	CTAG	1 cut(s)	576
GluI	GCNGC	4 cut(s)	30, 43, 273, 506
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	57, 561
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	2 cut(s)	197, 223
Hin1I	GRCGYC	3 cut(s)	189, 234, 255
Hin1II	CATG	5 cut(s)	29, 325, 343, 432, 448
HincII	GTYRAC	2 cut(s)	493, 556
HindII	GTYRAC	2 cut(s)	493, 556
HinfI	GANTC	2 cut(s)	162, 368
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	5 cut(s)	103, 352, 412, 493, 556
Hpy188I	TCNGA	2 cut(s)	63, 86
Hpy8I	GTNNAC	5 cut(s)	103, 352, 412, 493, 556
Hpy99I	CGWCG	5 cut(s)	134, 239, 260, 557, 560
HpyAV	CCTTC	1 cut(s)	147
HpyCH4IV	ACGT	2 cut(s)	255, 408
HpyCH4V	TGCA	5 cut(s)	29, 42, 316, 428, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 425
HpySE526I	ACGT	2 cut(s)	255, 408
Hsp92I	GRCGYC	3 cut(s)	189, 234, 255
Hsp92II	CATG	5 cut(s)	29, 325, 343, 432, 448
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	63, 527, 603
LmnI	GCTCC	1 cut(s)	180
Lsp1109I	GCAGC	2 cut(s)	41, 54
LweI	GCATC	2 cut(s)	238, 270
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	2 cut(s)	255, 408
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	3 cut(s)	65, 529, 605
MboI	GATC	3 cut(s)	63, 527, 603
MboII	GAAGA	4 cut(s)	118, 349, 398, 482
MflI	RGATCY	1 cut(s)	527
MhlI	GDGCHC	3 cut(s)	11, 84, 177
MluCI	AATT	1 cut(s)	485
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	2 cut(s)	188, 206
Mph1103I	ATGCAT	1 cut(s)	430
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	3 cut(s)	48, 182, 519
MvaI	CCWGG	3 cut(s)	48, 182, 519
MwoI	GCNNNNNNNGC	2 cut(s)	88, 425
NdeII	GATC	3 cut(s)	63, 527, 603
NlaIII	CATG	5 cut(s)	29, 325, 343, 432, 448
NlaIV	GGNNCC	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	430
NspI	RCATGY	1 cut(s)	29
PaeR7I	CTCGAG	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	4 cut(s)	162, 195, 204, 552
PfeI	GAWTC	1 cut(s)	368
PflFI	GACNNNGTC	3 cut(s)	191, 257, 551
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	4 cut(s)	31, 44, 274, 507
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
Psp124BI	GAGCTC	3 cut(s)	11, 84, 177
Psp6I	CCWGG	3 cut(s)	46, 180, 517
PspGI	CCWGG	3 cut(s)	46, 180, 517
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	77
PstI	CTGCAG	2 cut(s)	44, 567
PsuI	RGATCY	1 cut(s)	527
PsyI	GACNNNGTC	3 cut(s)	191, 257, 551
RsaI	GTAC	3 cut(s)	291, 407, 534
RsaNI	GTAC	3 cut(s)	290, 406, 533
SacI	GAGCTC	3 cut(s)	11, 84, 177
SalI	GTCGAC	1 cut(s)	554
SatI	GCNGC	4 cut(s)	30, 43, 273, 506
Sau3AI	GATC	3 cut(s)	63, 527, 603
Sau96I	GGNCC	1 cut(s)	55
SbfI	CCTGCAGG	1 cut(s)	567
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	48, 182, 519
SdaI	CCTGCAGG	1 cut(s)	567
SduI	GDGCHC	3 cut(s)	11, 84, 177
SetI	ASST	8 cut(s)	11, 84, 156, 177, 258, 313, 330, 411
SfaNI	GCATC	2 cut(s)	238, 270
SfcI	CTRYAG	2 cut(s)	40, 563
Sfr274I	CTCGAG	1 cut(s)	77
SgrDI	CGTCGACG	1 cut(s)	554
SlaI	CTCGAG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse8387I	CCTGCAGG	1 cut(s)	567
Sse9I	AATT	1 cut(s)	485
SsiI	CCGC	4 cut(s)	215, 265, 272, 506
SspMI	CTAG	1 cut(s)	576
SstI	GAGCTC	3 cut(s)	11, 84, 177
StyD4I	CCNGG	3 cut(s)	46, 180, 517
StyI	CCWWGG	1 cut(s)	150
TaiI	ACGT	2 cut(s)	258, 411
TaqI	TCGA	7 cut(s)	78, 156, 165, 198, 207, 546, 555
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	1 cut(s)	485
TatI	WGTACW	1 cut(s)	532
TauI	GCSGC	2 cut(s)	275, 508
TfiI	GAWTC	1 cut(s)	368
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	29, 42
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	3 cut(s)	103, 338, 483
TspRI	CASTG	1 cut(s)	39
Tth111I	GACNNNGTC	3 cut(s)	191, 257, 551
Van91I	CCANNNNNTGG	1 cut(s)	429
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	77
XmiI	GTMKAC	2 cut(s)	411, 555
XspI	CTAG	1 cut(s)	576
ZraI	GACGTC	1 cut(s)	256
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.