Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

12732921 .. 12733555

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1153300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAACACATGGGAGGACTTGGAGCACAAAACAATAGATATGTTACGGGATGAGGGACTCTTGGGCAGAGTGGCTAGGGTGCCAGTTTATCCTATTGGACCATTGACGAAGCCGGTCCAAACAACCGATTCAACCTCAACCGGTCTAAGGGATGAGGGCTTGTTTAATTGGCTAGACAAGCGACCTTGTGAATCTGTGATATTTATGTCATTAGGGAGTGGAGGGACTGTGTCCTTGGAGCAGATGATAAAAATGGCTTGGGGTTTGGAGTTGAGTAAACAAAGATTCATTTGGGTTGTACTACCACCAGCTAAATCCATAGATGCTGCTTTTTTCACTTCAGGAAACCGAGACGATGACCCATCAACCTATTTGCCCAAAGAATTCTTGACCCGGACCCGTAACGTTGGGTTGGTTGTGCCTCTTTGGGCGCCACAAGTGGACATTTTAAGTCATCCATCAATAAGAGTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

159

Amino Acids

17.77

Weight (kDa)

5.68

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	79, 430
AclI	AACGTT	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	431
AfaI	GTAC	1 cut(s)	300
AfiI	CCNNNNNNNGG	1 cut(s)	147
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	132
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	383
AsiGI	ACCGGT	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	3 cut(s)	98, 115, 396
AsuC2I	CCSGG	1 cut(s)	394
AvaII	GGWCC	3 cut(s)	98, 115, 396
BanI	GGYRCC	2 cut(s)	79, 430
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	2 cut(s)	370, 466
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	2 cut(s)	75, 173
BfoI	RGCGCY	1 cut(s)	434
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	394
Bme18I	GGWCC	3 cut(s)	98, 115, 396
BmgT120I	GGNCC	3 cut(s)	98, 115, 396
BmiI	GGNNCC	3 cut(s)	81, 398, 432
BmrFI	CCNGG	1 cut(s)	394
BmsI	GCATC	1 cut(s)	313
BpuMI	CCSGG	1 cut(s)	394
BsaHI	GRCGYC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse118I	RCCGGY	2 cut(s)	112, 140
Bse1I	ACTGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	3 cut(s)	55, 157, 454
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	313
BshNI	GGYRCC	2 cut(s)	79, 430
BshTI	ACCGGT	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	3 cut(s)	113, 141, 394
BslFI	GGGAC	2 cut(s)	69, 238
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	345
BsmBI	CGTCTC	1 cut(s)	345
BsmFI	GGGAC	2 cut(s)	69, 238
Bsp1286I	GDGCHC	1 cut(s)	27
BspLI	GGNNCC	3 cut(s)	81, 398, 432
BspT107I	GGYRCC	2 cut(s)	79, 430
BsrFI	RCCGGY	2 cut(s)	112, 140
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	2 cut(s)	112, 140
BssECI	CCNNGG	1 cut(s)	234
BssNI	GRCGYC	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	431
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	3 cut(s)	55, 157, 454
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	433
BstMAI	GTCTC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	392
BstV1I	GCAGC	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	55, 157, 454
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	2 cut(s)	112, 140
Cfr13I	GGNCC	3 cut(s)	98, 115, 396
Csp6I	GTAC	1 cut(s)	299
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	1 cut(s)	9
CviJI	RGCY	6 cut(s)	74, 112, 159, 172, 257, 311
CviKI_1	RGCY	6 cut(s)	74, 112, 159, 172, 257, 311
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	1 cut(s)	146
DinI	GGCGCC	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	234
Eco47I	GGWCC	3 cut(s)	98, 115, 396
Eco57I	CTGAAG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	234
EgeI	GGCGCC	1 cut(s)	432
EheI	GGCGCC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	1 cut(s)	12
FaiI	YATR	4 cut(s)	10, 41, 206, 320
FaqI	GGGAC	2 cut(s)	69, 238
FatI	CATG	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	3 cut(s)	62, 164, 441
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	2 cut(s)	75, 173
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	434
HapII	CCGG	3 cut(s)	113, 141, 394
HhaI	GCGC	1 cut(s)	433
Hin1I	GRCGYC	1 cut(s)	431
Hin1II	CATG	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HinfI	GANTC	4 cut(s)	57, 128, 191, 285
HpaII	CCGG	3 cut(s)	113, 141, 394
Hpy166II	GTNNAC	2 cut(s)	278, 442
Hpy188III	TCNNGA	2 cut(s)	342, 388
Hpy8I	GTNNAC	2 cut(s)	278, 442
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	1 cut(s)	405
Hsp92I	GRCGYC	1 cut(s)	431
Hsp92II	CATG	1 cut(s)	12
HspAI	GCGC	1 cut(s)	431
KasI	GGCGCC	1 cut(s)	430
LmnI	GCTCC	2 cut(s)	22, 238
LpnPI	CCDG	6 cut(s)	96, 126, 154, 321, 327, 407
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	75, 173
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	42, 401
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	2 cut(s)	166, 383
Mly113I	GGCGCC	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	6 cut(s)	7, 46, 145, 148, 215, 432
MseI	TTAA	2 cut(s)	165, 449
MspI	CCGG	3 cut(s)	113, 141, 394
MspR9I	CCNGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	1 cut(s)	178
NarI	GGCGCC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	394
NlaIII	CATG	1 cut(s)	12
NlaIV	GGNNCC	3 cut(s)	81, 398, 432
PfeI	GAWTC	3 cut(s)	128, 191, 285
PflFI	GACNNNGTC	1 cut(s)	229
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	1 cut(s)	51
PluTI	GGCGCC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	51
Psp1406I	AACGTT	1 cut(s)	405
PspN4I	GGNNCC	3 cut(s)	81, 398, 432
PspPI	GGNCC	3 cut(s)	98, 115, 396
PsyI	GACNNNGTC	1 cut(s)	229
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	165, 449
SatI	GCNGC	1 cut(s)	327
Sau96I	GGNCC	3 cut(s)	98, 115, 396
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	394
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	5 cut(s)	137, 187, 313, 371, 408
SfaNI	GCATC	1 cut(s)	313
SfoI	GGCGCC	1 cut(s)	432
SinI	GGWCC	3 cut(s)	98, 115, 396
Sse9I	AATT	2 cut(s)	166, 383
SspDI	GGCGCC	1 cut(s)	430
SspMI	CTAG	2 cut(s)	75, 173
StyD4I	CCNGG	1 cut(s)	392
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	408
TasI	AATT	2 cut(s)	166, 383
TatI	WGTACW	1 cut(s)	298
TfiI	GAWTC	3 cut(s)	128, 191, 285
Tru1I	TTAA	2 cut(s)	165, 449
Tru9I	TTAA	2 cut(s)	165, 449
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	17, 277
Tth111I	GACNNNGTC	1 cut(s)	229
VpaK11BI	GGWCC	3 cut(s)	98, 115, 396
XapI	RAATTY	1 cut(s)	383
XspI	CTAG	2 cut(s)	75, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.