Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8411463.1

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1029

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8411463.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 730 bp

atgggccatctcgtccctggccttgagctagggaacgactcgtcacccaccaaaacttcacttctggacatcatcgagctcccatcaccggatgtttctggccttgtcgaccccgatgctgtcgtcgttacacgcctcgcagaaatggcgacaagtatgacctgcgtttcgtgccgccttacacgacatgatcaactttcgtcatcgtcgccccaccatgctcatcgtggacctattcggcatcgattctttgcccattgccgaggagtttgggattccaacggtgatgggattttgataaacatatgggagaaactagagcccaagtccctcgcagcactaagagatgagaaattcttgggccgatttgcgaatgtgtctgtctttccaattgggccgttgatgaggcccaacgtgtattccagcttgaggggtgatgtgtttgattggctagatgagcagcccaatgaatctgtgatttacgtgtcctttggaagcggtggggccctgtcatatgaacaaatggtcgagctagcttggggtttggagatgagtcaacagaggttcgtttgggtcattcggccgcctatcatatcatctgtcaatgaaacatttttcacagcagggaatcacaatggcgagaacgacaatctaactaaatacttgcccaaggggtttttgggccgaaccaaggacattggatttgtcatccctttgtgggctccacaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

243

Amino Acids

26.99

Weight (kDa)

5.73

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	3 cut(s)	175, 498, 584
AcoI	YGGCCR	1 cut(s)	581
AcsI	RAATTY	1 cut(s)	353
AfiI	CCNNNNNNNGG	4 cut(s)	88, 429, 691, 718
AflIII	ACRYGT	2 cut(s)	414, 483
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	5 cut(s)	28, 79, 426, 532, 536
AluI	AGCT	5 cut(s)	28, 79, 426, 532, 536
Alw21I	GWGCWC	1 cut(s)	81
AoxI	GGCC	9 cut(s)	4, 19, 100, 361, 395, 407, 504, 581, 682
ApaI	GGGCCC	1 cut(s)	508
ApeKI	GCWGC	2 cut(s)	335, 460
ApoI	RAATTY	1 cut(s)	353
ArsI	GACNNNNNNTTYG	4 cut(s)	151, 183, 686, 718
AspS9I	GGNCC	8 cut(s)	4, 230, 361, 395, 408, 504, 505, 682
AsuHPI	GGTGA	4 cut(s)	36, 78, 296, 446
AsuNHI	GCTAGC	1 cut(s)	532
AvaII	GGWCC	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	508
BanII	GRGCYC	4 cut(s)	81, 324, 508, 724
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	347, 472
BccI	CCATC	3 cut(s)	15, 91, 281
BceAI	ACGGC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	1 cut(s)	18
BclI	TGATCA	1 cut(s)	190
BfaI	CTAG	4 cut(s)	29, 317, 452, 533
BfuAI	ACCTGC	1 cut(s)	170
BisI	GCNGC	4 cut(s)	175, 336, 461, 584
BlsI	GCNGC	4 cut(s)	176, 337, 462, 585
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	8 cut(s)	4, 230, 361, 395, 408, 504, 505, 682
BmiI	GGNNCC	3 cut(s)	505, 506, 723
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	106, 250
BmtI	GCTAGC	1 cut(s)	536
BpuEI	CTTGAG	2 cut(s)	44, 448
Bsa29I	ATCGAT	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	484
BsaJI	CCNNGG	4 cut(s)	16, 262, 669, 690
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 429, 691, 718
Bse3DI	GCAATG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	18
BseCI	ATCGAT	1 cut(s)	244
BseDI	CCNNGG	4 cut(s)	16, 262, 669, 690
BseGI	GGATG	2 cut(s)	97, 708
BseLI	CCNNNNNNNGG	4 cut(s)	88, 429, 691, 718
BseMI	GCAATG	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	508
BseX3I	CGGCCG	1 cut(s)	581
BseXI	GCAGC	2 cut(s)	347, 472
Bsh1285I	CGRYCG	1 cut(s)	584
BshFI	GGCC	9 cut(s)	6, 21, 102, 363, 397, 409, 506, 583, 684
BshVI	ATCGAT	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	584
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	4 cut(s)	88, 429, 691, 718
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	9 cut(s)	6, 21, 102, 363, 397, 409, 506, 583, 684
Bsp120I	GGGCCC	1 cut(s)	504
Bsp1286I	GDGCHC	4 cut(s)	81, 324, 508, 724
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	3 cut(s)	175, 498, 584
BspANI	GGCC	9 cut(s)	6, 21, 102, 363, 397, 409, 506, 583, 684
BspDI	ATCGAT	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	505, 506, 723
BspMI	ACCTGC	1 cut(s)	170
BspOI	GCTAGC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	256
BssECI	CCNNGG	4 cut(s)	16, 262, 669, 690
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	669, 690
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	284
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	97, 708
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstMCI	CGRYCG	1 cut(s)	584
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 171, 457
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	508
BstV1I	GCAGC	2 cut(s)	347, 472
BstZI	CGGCCG	1 cut(s)	581
Bsu15I	ATCGAT	1 cut(s)	244
BsuRI	GGCC	9 cut(s)	6, 21, 102, 363, 397, 409, 506, 583, 684
BsuTUI	ATCGAT	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	97, 708
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	534
Cfr13I	GGNCC	8 cut(s)	4, 230, 361, 395, 408, 504, 505, 682
ClaI	ATCGAT	1 cut(s)	244
CviAII	CATG	2 cut(s)	188, 218
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	581
EagI	CGGCCG	1 cut(s)	581
Ecl136II	GAGCTC	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	581
Eco130I	CCWWGG	2 cut(s)	669, 690
Eco24I	GRGCYC	4 cut(s)	81, 324, 508, 724
Eco47I	GGWCC	1 cut(s)	230
Eco52I	CGGCCG	1 cut(s)	581
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoO109I	RGGNCCY	2 cut(s)	504, 505
EcoRII	CCWGG	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	669, 690
EcoT38I	GRGCYC	4 cut(s)	81, 324, 508, 724
ErhI	CCWWGG	2 cut(s)	669, 690
FaeI	CATG	2 cut(s)	191, 221
FaiI	YATR	8 cut(s)	158, 189, 219, 305, 307, 514, 516, 593
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	2 cut(s)	187, 217
FauNDI	CATATG	2 cut(s)	305, 514
FbaI	TGATCA	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	4 cut(s)	175, 336, 461, 584
FokI	GGATG	2 cut(s)	104, 695
FriOI	GRGCYC	4 cut(s)	81, 324, 508, 724
Fsp4HI	GCNGC	4 cut(s)	175, 336, 461, 584
FspBI	CTAG	4 cut(s)	29, 317, 452, 533
GluI	GCNGC	4 cut(s)	175, 336, 461, 584
HaeIII	GGCC	9 cut(s)	6, 21, 102, 363, 397, 409, 506, 583, 684
HapII	CCGG	1 cut(s)	89
Hin1II	CATG	2 cut(s)	191, 221
HincII	GTYRAC	2 cut(s)	109, 557
HindII	GTYRAC	2 cut(s)	109, 557
HinfI	GANTC	6 cut(s)	38, 246, 275, 470, 553, 628
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	4 cut(s)	36, 78, 296, 446
Hpy166II	GTNNAC	3 cut(s)	109, 230, 557
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	3 cut(s)	109, 230, 557
Hpy99I	CGWCG	2 cut(s)	128, 211
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	2 cut(s)	414, 483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 171, 457
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	2 cut(s)	414, 483
Hsp92II	CATG	2 cut(s)	191, 221
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	2 cut(s)	84, 727
LpnPI	CCDG	9 cut(s)	3, 30, 50, 84, 102, 175, 436, 521, 609
Lsp1109I	GCAGC	2 cut(s)	347, 472
LweI	GCATC	2 cut(s)	106, 250
MaeI	CTAG	4 cut(s)	29, 317, 452, 533
MaeII	ACGT	2 cut(s)	414, 483
MaeIII	GTNAC	2 cut(s)	42, 127
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	4 cut(s)	81, 324, 508, 724
MluCI	AATT	2 cut(s)	353, 390
MlyI	GAGTC	2 cut(s)	32, 562
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	6 cut(s)	146, 257, 341, 399, 423, 555
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	146, 171, 457
NdeI	CATATG	2 cut(s)	305, 514
NdeII	GATC	1 cut(s)	190
NheI	GCTAGC	1 cut(s)	532
NlaIII	CATG	2 cut(s)	191, 221
NlaIV	GGNNCC	3 cut(s)	505, 506, 723
NmeAIII	GCCGAG	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	42
PfeI	GAWTC	4 cut(s)	246, 275, 470, 628
PkrI	GCNGC	4 cut(s)	176, 337, 462, 585
PleI	GAGTC	2 cut(s)	32, 561
PpsI	GAGTC	2 cut(s)	32, 561
Ppu21I	YACGTR	1 cut(s)	484
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	3 cut(s)	505, 506, 723
PspOMI	GGGCCC	1 cut(s)	504
PspPI	GGNCC	8 cut(s)	4, 230, 361, 395, 408, 504, 505, 682
SacI	GAGCTC	1 cut(s)	81
SalI	GTCGAC	1 cut(s)	107
SatI	GCNGC	4 cut(s)	175, 336, 461, 584
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	8 cut(s)	4, 230, 361, 395, 408, 504, 505, 682
SchI	GAGTC	2 cut(s)	32, 562
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	4 cut(s)	81, 324, 508, 724
SfaNI	GCATC	2 cut(s)	106, 250
SinI	GGWCC	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	23, 427
SmoI	CTYRAG	2 cut(s)	23, 427
Sse9I	AATT	2 cut(s)	353, 390
SsiI	CCGC	3 cut(s)	175, 498, 584
SspMI	CTAG	4 cut(s)	29, 317, 452, 533
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	2 cut(s)	669, 690
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	2 cut(s)	417, 486
TaqI	TCGA	4 cut(s)	75, 108, 244, 528
TasI	AATT	2 cut(s)	353, 390
TauI	GCSGC	2 cut(s)	177, 586
TfiI	GAWTC	4 cut(s)	246, 275, 470, 628
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	2 cut(s)	335, 460
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	3 cut(s)	483, 531, 621
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	3 cut(s)	14, 224, 676
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	4 cut(s)	29, 317, 452, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.