Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

12733710 .. 12734342

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1153400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGACATGAGCCATTGCCCTTCGTCTACCACGAGCTCACAGCCACATGCTGCCATACTTTGCAGCCCAGGCCTCGGCCACCTCATCCCCGTCCTCGAACTCGCAAAACGACTTCTCACCCACCGGAATTTCACCGTGACGATTTTTGCCATCCCATCTCCTGCTTCCAAGACTGAGTCTGAGCTCCTCAAGGCAGCCGCCACCCCCAAACTTTTTGACATTATTGAACTCCCACCGCCAGACATTTCCGGCTGTATTGGCCCCGACGTTGCTGTCGCTACCCTCCTTGCAGTCATGATGTGTGAAGTACGACCTGCGTTTCGGTCAGCCATACTTGGAATGAAGTATTCTCTTCTTCCTACAGTGCTTATTGTGGACCTTTTCAGCACCGAATCTCTGTCAATCGGCGACGAGCTGGGGATTCCCAAGTATGTTTACATTGCTAGCACAACATGGTTCGTAGCTTTGACTATCTACGTGCCAGTTTTTGATAAAGAAGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

169

Amino Acids

18.12

Weight (kDa)

5.3

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	322
AccI	GTMKAC	1 cut(s)	26
AciI	CCGC	2 cut(s)	198, 236
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	127
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	4 cut(s)	36, 184, 415, 464
AluI	AGCT	4 cut(s)	36, 184, 415, 464
Alw21I	GWGCWC	2 cut(s)	38, 186
AoxI	GGCC	3 cut(s)	70, 76, 259
ApeKI	GCWGC	3 cut(s)	50, 63, 194
ApoI	RAATTY	1 cut(s)	127
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AspS9I	GGNCC	2 cut(s)	260, 376
AsuHPI	GGTGA	2 cut(s)	109, 124
AsuNHI	GCTAGC	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	376
BanII	GRGCYC	2 cut(s)	38, 186
BauI	CACGAG	1 cut(s)	31
Bbv12I	GWGCWC	2 cut(s)	38, 186
BbvI	GCAGC	3 cut(s)	37, 75, 206
BccI	CCATC	2 cut(s)	158, 163
BciT130I	CCWGG	1 cut(s)	69
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	4 cut(s)	51, 64, 195, 198
BlsI	GCNGC	4 cut(s)	52, 65, 196, 199
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	2 cut(s)	260, 376
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	69
BmtI	GCTAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	478
BsaJI	CCNNGG	2 cut(s)	67, 73
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	482
Bse3DI	GCAATG	2 cut(s)	13, 438
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	67, 73
BseGI	GGATG	2 cut(s)	84, 150
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	2 cut(s)	13, 438
BseMII	CTCAG	2 cut(s)	165, 171
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	3 cut(s)	37, 75, 206
BseYI	CCCAGC	1 cut(s)	415
BshFI	GGCC	3 cut(s)	72, 78, 261
BsiHKAI	GWGCWC	2 cut(s)	38, 186
BsiSI	CCGG	2 cut(s)	124, 249
BslI	CCNNNNNNNGG	1 cut(s)	74
BsnI	GGCC	3 cut(s)	72, 78, 261
Bsp1286I	GDGCHC	2 cut(s)	38, 186
BspACI	CCGC	2 cut(s)	198, 236
BspANI	GGCC	3 cut(s)	72, 78, 261
BspCNI	CTCAG	2 cut(s)	166, 172
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	322
BspOI	GCTAGC	1 cut(s)	447
BsrDI	GCAATG	2 cut(s)	13, 438
BsrI	ACTGG	1 cut(s)	482
BssECI	CCNNGG	2 cut(s)	67, 73
BssSI	CACGAG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	136, 364
Bst6I	CTCTTC	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	2 cut(s)	174, 180
BstF5I	GGATG	2 cut(s)	84, 150
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 258
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	37, 75, 206
BsuRI	GGCC	3 cut(s)	72, 78, 261
BtsCI	GGATG	2 cut(s)	84, 150
BtsIMutI	CAGTG	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	445
CciI	TCATGA	1 cut(s)	294
Cfr13I	GGNCC	2 cut(s)	260, 376
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	4 cut(s)	7, 47, 295, 453
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	2 cut(s)	174, 180
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Ecl136II	GAGCTC	2 cut(s)	36, 184
Eco147I	AGGCCT	1 cut(s)	72
Eco24I	GRGCYC	2 cut(s)	38, 186
Eco47I	GGWCC	1 cut(s)	376
Eco53kI	GAGCTC	2 cut(s)	36, 184
EcoICRI	GAGCTC	2 cut(s)	36, 184
EcoRII	CCWGG	1 cut(s)	67
EcoT38I	GRGCYC	2 cut(s)	38, 186
FaeI	CATG	4 cut(s)	10, 50, 298, 456
FaiI	YATR	7 cut(s)	8, 48, 56, 296, 332, 432, 454
FatI	CATG	4 cut(s)	6, 46, 294, 452
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	4 cut(s)	51, 64, 195, 198
FokI	GGATG	2 cut(s)	71, 137
FriOI	GRGCYC	2 cut(s)	38, 186
Fsp4HI	GCNGC	4 cut(s)	51, 64, 195, 198
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	4 cut(s)	51, 64, 195, 198
GsaI	CCCAGC	1 cut(s)	419
HaeIII	GGCC	3 cut(s)	72, 78, 261
HapII	CCGG	2 cut(s)	124, 249
Hin1II	CATG	4 cut(s)	10, 50, 298, 456
HinfI	GANTC	3 cut(s)	176, 392, 421
HpaII	CCGG	2 cut(s)	124, 249
HphI	GGTGA	2 cut(s)	109, 124
Hpy166II	GTNNAC	3 cut(s)	27, 376, 436
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	3 cut(s)	27, 376, 436
Hpy99I	CGWCG	2 cut(s)	269, 413
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	2 cut(s)	136, 364
HpyCH4IV	ACGT	2 cut(s)	267, 477
HpyCH4V	TGCA	2 cut(s)	63, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 258
HpyF3I	CTNAG	2 cut(s)	174, 180
HpySE526I	ACGT	2 cut(s)	267, 477
Hsp92II	CATG	4 cut(s)	10, 50, 298, 456
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	9 cut(s)	54, 81, 137, 174, 252, 262, 327, 401, 495
Lsp1109I	GCAGC	3 cut(s)	37, 75, 206
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	2 cut(s)	267, 477
MaeIII	GTNAC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	344, 347
MhlI	GDGCHC	2 cut(s)	38, 186
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	5 cut(s)	83, 92, 104, 197, 293
MspI	CCGG	2 cut(s)	124, 249
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	69, 258
NheI	GCTAGC	1 cut(s)	443
NlaIII	CATG	4 cut(s)	10, 50, 298, 456
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	50
PagI	TCATGA	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	392, 421
PflFI	GACNNNGTC	1 cut(s)	175
PkrI	GCNGC	4 cut(s)	52, 65, 196, 199
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	478
Psp124BI	GAGCTC	2 cut(s)	38, 186
Psp6I	CCWGG	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	2 cut(s)	260, 376
PsyI	GACNNNGTC	1 cut(s)	175
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SacI	GAGCTC	2 cut(s)	38, 186
SatI	GCNGC	4 cut(s)	51, 64, 195, 198
Sau96I	GGNCC	2 cut(s)	260, 376
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	2 cut(s)	38, 186
SetI	ASST	9 cut(s)	38, 84, 186, 270, 316, 381, 417, 466, 480
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	127
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	2 cut(s)	198, 236
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	2 cut(s)	38, 186
StuI	AGGCCT	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	136, 364
TaiI	ACGT	2 cut(s)	270, 480
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	127
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	392, 421
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	3 cut(s)	50, 63, 194
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	369
Tth111I	GACNNNGTC	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	26
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.