Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003804.1

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Forward (+)

80431 .. 81499

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003804.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgatcttcgtcgttccattgcacacttccaaggccgaatctgaactcctcgatgcatctgccttcccacgtagtctggacatcatcgagctcccatcacctgatgtttctggacttgtcgaccccgatgctgtcgtcgtcacacgcctcgcagaaatgatgcgacaagtacgacctgcgtttcgtgccgccttacacgacatgatcaactttcatcatcgtcaccccaccatgctcatcatggacctattcggcaccgaatctttgcccattgccgaggagtttgggattccaaagtatgtgtacattgcttccaacgcatgtaatcagcagtacgacgagcacatgctgatgggaagaggaatcccaaagggtgatggaattttgaaaaacatatgggaggaactagagcccaagtccctagcagcactaagagatgagaaattcttgggccgatttgcgaatgttcttgtctttccaattgggccgttgatgaggcctaatgtgtcgtctagcttgaggggtgatgtgtttgattggctagatgagctgcccaatgaatctgtgatttacgtgtcctttggaagcggtggggccctgtcatctgaacaaatggtcgagctagcttggggttcggagatgagtaaacagaggttcgtttgggtcattcggccgcctatcatatcatctgctgttgaaacatttttcacagcaaagagttacaatggcgaggacgacaatctaactaaatacttgcccaaggggtttttgggccaaaccaaggacattgggtttatcatccctttgtgggctccacaagtggatatcttggcccatccattggtcggaggttttttgacacattgctggtggaactcaacccttgaaagcatcaccaaccgagtaccaatgattgcttggccgctgttcgctgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

312

Amino Acids

34.97

Weight (kDa)

5.07

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	254
AccB7I	CCANNNNNTGG	1 cut(s)	841
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	4 cut(s)	189, 588, 674, 923
AcoI	YGGCCR	2 cut(s)	671, 920
AcsI	RAATTY	2 cut(s)	381, 443
AfaI	GTAC	4 cut(s)	171, 305, 335, 906
AfiI	CCNNNNNNNGG	4 cut(s)	781, 808, 841, 845
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	3 cut(s)	388, 698, 887
AluBI	AGCT	5 cut(s)	91, 516, 550, 622, 626
AluI	AGCT	5 cut(s)	91, 516, 550, 622, 626
Alw21I	GWGCWC	2 cut(s)	93, 345
AoxI	GGCC	9 cut(s)	33, 451, 485, 497, 594, 671, 772, 831, 920
ApaI	GGGCCC	1 cut(s)	598
ApeKI	GCWGC	2 cut(s)	425, 550
ApoI	RAATTY	2 cut(s)	381, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AspS9I	GGNCC	7 cut(s)	244, 451, 485, 594, 595, 772, 832
AsuHPI	GGTGA	5 cut(s)	90, 215, 386, 536, 886
AsuNHI	GCTAGC	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	598
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	4 cut(s)	93, 414, 598, 814
Bbv12I	GWGCWC	2 cut(s)	93, 345
BbvI	GCAGC	2 cut(s)	437, 537
BccI	CCATC	4 cut(s)	103, 346, 371, 843
BceAI	ACGGC	1 cut(s)	472
BcgI	CGANNNNNNTGC	4 cut(s)	41, 75, 110, 144
BclI	TGATCA	1 cut(s)	204
BfaI	CTAG	5 cut(s)	407, 422, 513, 542, 623
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	5 cut(s)	189, 426, 551, 674, 923
BlsI	GCNGC	5 cut(s)	190, 427, 552, 675, 924
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	7 cut(s)	244, 451, 485, 594, 595, 772, 832
BmiI	GGNNCC	4 cut(s)	256, 595, 596, 813
BmsI	GCATC	5 cut(s)	43, 65, 118, 150, 900
BmtI	GCTAGC	1 cut(s)	626
BpuEI	CTTGAG	1 cut(s)	538
BsaAI	YACGTR	2 cut(s)	71, 574
BsaJI	CCNNGG	4 cut(s)	30, 276, 759, 780
Bsc4I	CCNNNNNNNGG	4 cut(s)	781, 808, 841, 845
Bse3DI	GCAATG	4 cut(s)	17, 270, 306, 862
BseDI	CCNNGG	4 cut(s)	30, 276, 759, 780
BseGI	GGATG	2 cut(s)	798, 835
BseLI	CCNNNNNNNGG	4 cut(s)	781, 808, 841, 845
BseMI	GCAATG	4 cut(s)	17, 270, 306, 862
BseMII	CTCAG	1 cut(s)	924
BseRI	GAGGAG	2 cut(s)	38, 293
BseSI	GKGCMC	1 cut(s)	598
BseX3I	CGGCCG	1 cut(s)	671
BseXI	GCAGC	2 cut(s)	437, 537
Bsh1285I	CGRYCG	1 cut(s)	674
BshFI	GGCC	9 cut(s)	35, 453, 487, 499, 596, 673, 774, 833, 922
BshNI	GGYRCC	1 cut(s)	254
BsiEI	CGRYCG	1 cut(s)	674
BsiHKAI	GWGCWC	2 cut(s)	93, 345
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	4 cut(s)	781, 808, 841, 845
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	9 cut(s)	35, 453, 487, 499, 596, 673, 774, 833, 922
Bsp120I	GGGCCC	1 cut(s)	594
Bsp1286I	GDGCHC	5 cut(s)	93, 345, 414, 598, 814
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	3, 204
BspACI	CCGC	4 cut(s)	189, 588, 674, 923
BspANI	GGCC	9 cut(s)	35, 453, 487, 499, 596, 673, 774, 833, 922
BspCNI	CTCAG	1 cut(s)	925
BspLI	GGNNCC	4 cut(s)	256, 595, 596, 813
BspMI	ACCTGC	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	626
BspT107I	GGYRCC	1 cut(s)	254
BsrDI	GCAATG	4 cut(s)	17, 270, 306, 862
BsrGI	TGTACA	1 cut(s)	303
BssECI	CCNNGG	4 cut(s)	30, 276, 759, 780
BssMI	GATC	2 cut(s)	3, 204
BssT1I	CCWWGG	3 cut(s)	30, 759, 780
Bst6I	CTCTTC	1 cut(s)	352
BstAUI	TGTACA	1 cut(s)	303
BstBAI	YACGTR	2 cut(s)	71, 574
BstC8I	GCNNGC	1 cut(s)	624
BstDEI	CTNAG	2 cut(s)	431, 933
BstF5I	GGATG	2 cut(s)	798, 835
BstKTI	GATC	2 cut(s)	6, 207
BstMBI	GATC	2 cut(s)	3, 204
BstMCI	CGRYCG	1 cut(s)	674
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 317, 547
BstNSI	RCATGY	2 cut(s)	324, 349
BstSLI	GKGCMC	1 cut(s)	598
BstV1I	GCAGC	2 cut(s)	437, 537
BstZI	CGGCCG	1 cut(s)	671
BsuRI	GGCC	9 cut(s)	35, 453, 487, 499, 596, 673, 774, 833, 922
BtsCI	GGATG	2 cut(s)	798, 835
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	624
Cfr13I	GGNCC	7 cut(s)	244, 451, 485, 594, 595, 772, 832
Csp6I	GTAC	4 cut(s)	170, 304, 334, 905
CviAII	CATG	5 cut(s)	202, 232, 241, 321, 346
CviQI	GTAC	4 cut(s)	170, 304, 334, 905
DdeI	CTNAG	2 cut(s)	431, 933
DpnI	GATC	2 cut(s)	5, 206
DpnII	GATC	2 cut(s)	3, 204
EaeI	YGGCCR	2 cut(s)	671, 920
EagI	CGGCCG	1 cut(s)	671
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	91
EclXI	CGGCCG	1 cut(s)	671
Eco130I	CCWWGG	3 cut(s)	30, 759, 780
Eco147I	AGGCCT	1 cut(s)	499
Eco24I	GRGCYC	4 cut(s)	93, 414, 598, 814
Eco32I	GATATC	1 cut(s)	826
Eco47I	GGWCC	1 cut(s)	244
Eco52I	CGGCCG	1 cut(s)	671
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	2 cut(s)	594, 595
EcoRV	GATATC	1 cut(s)	826
EcoT14I	CCWWGG	3 cut(s)	30, 759, 780
EcoT22I	ATGCAT	1 cut(s)	58
EcoT38I	GRGCYC	4 cut(s)	93, 414, 598, 814
ErhI	CCWWGG	3 cut(s)	30, 759, 780
FaeI	CATG	5 cut(s)	205, 235, 244, 324, 349
FaiI	YATR	9 cut(s)	203, 233, 242, 300, 322, 347, 395, 397, 683
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	5 cut(s)	201, 231, 240, 320, 345
FauNDI	CATATG	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	5 cut(s)	189, 426, 551, 674, 923
FokI	GGATG	2 cut(s)	785, 822
FriOI	GRGCYC	4 cut(s)	93, 414, 598, 814
Fsp4HI	GCNGC	5 cut(s)	189, 426, 551, 674, 923
FspBI	CTAG	5 cut(s)	407, 422, 513, 542, 623
GluI	GCNGC	5 cut(s)	189, 426, 551, 674, 923
HaeIII	GGCC	9 cut(s)	35, 453, 487, 499, 596, 673, 774, 833, 922
Hin1II	CATG	5 cut(s)	205, 235, 244, 324, 349
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	5 cut(s)	38, 260, 289, 363, 560
HphI	GGTGA	5 cut(s)	90, 215, 386, 536, 886
Hpy166II	GTNNAC	3 cut(s)	121, 304, 647
Hpy188I	TCNGA	4 cut(s)	43, 607, 637, 848
Hpy188III	TCNNGA	2 cut(s)	77, 111
Hpy8I	GTNNAC	3 cut(s)	121, 304, 647
Hpy99I	CGWCG	3 cut(s)	14, 140, 341
HpyAV	CCTTC	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	70, 573
HpyCH4V	TGCA	2 cut(s)	22, 56
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 317, 547
HpyF3I	CTNAG	2 cut(s)	431, 933
HpySE526I	ACGT	2 cut(s)	70, 573
Hsp92II	CATG	5 cut(s)	205, 235, 244, 324, 349
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	3, 204
LmnI	GCTCC	2 cut(s)	96, 817
LpnPI	CCDG	6 cut(s)	62, 96, 114, 189, 611, 853
Lsp1109I	GCAGC	2 cut(s)	437, 537
LweI	GCATC	5 cut(s)	43, 65, 118, 150, 900
MaeI	CTAG	5 cut(s)	407, 422, 513, 542, 623
MaeII	ACGT	2 cut(s)	70, 573
MaeIII	GTNAC	3 cut(s)	139, 221, 719
MalI	GATC	2 cut(s)	5, 206
MboI	GATC	2 cut(s)	3, 204
MboII	GAAGA	1 cut(s)	369
MfeI	CAATTG	1 cut(s)	480
MhlI	GDGCHC	5 cut(s)	93, 345, 414, 598, 814
MluCI	AATT	3 cut(s)	381, 443, 480
MmeI	TCCRAC	2 cut(s)	339, 826
Mph1103I	ATGCAT	1 cut(s)	58
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	925
MunI	CAATTG	1 cut(s)	480
MwoI	GCNNNNNNNGC	3 cut(s)	185, 317, 547
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	2 cut(s)	3, 204
NheI	GCTAGC	1 cut(s)	622
NlaIII	CATG	5 cut(s)	205, 235, 244, 324, 349
NlaIV	GGNNCC	4 cut(s)	256, 595, 596, 813
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	2 cut(s)	139, 221
NsiI	ATGCAT	1 cut(s)	58
NspI	RCATGY	2 cut(s)	324, 349
PceI	AGGCCT	1 cut(s)	499
PfeI	GAWTC	5 cut(s)	38, 260, 289, 363, 560
PflMI	CCANNNNNTGG	1 cut(s)	841
PkrI	GCNGC	5 cut(s)	190, 427, 552, 675, 924
Ppu21I	YACGTR	2 cut(s)	71, 574
Psp124BI	GAGCTC	1 cut(s)	93
PspN4I	GGNNCC	4 cut(s)	256, 595, 596, 813
PspOMI	GGGCCC	1 cut(s)	594
PspPI	GGNCC	7 cut(s)	244, 451, 485, 594, 595, 772, 832
RsaI	GTAC	4 cut(s)	171, 305, 335, 906
RsaNI	GTAC	4 cut(s)	170, 304, 334, 905
RseI	CAYNNNNRTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	93
SalI	GTCGAC	1 cut(s)	119
SatI	GCNGC	5 cut(s)	189, 426, 551, 674, 923
Sau3AI	GATC	2 cut(s)	3, 204
Sau96I	GGNCC	7 cut(s)	244, 451, 485, 594, 595, 772, 832
SduI	GDGCHC	5 cut(s)	93, 345, 414, 598, 814
SfaNI	GCATC	5 cut(s)	43, 65, 118, 150, 900
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
Sse9I	AATT	3 cut(s)	381, 443, 480
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	4 cut(s)	189, 588, 674, 923
SspMI	CTAG	5 cut(s)	407, 422, 513, 542, 623
SstI	GAGCTC	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	499
StyI	CCWWGG	3 cut(s)	30, 759, 780
TaiI	ACGT	2 cut(s)	73, 576
TaqI	TCGA	4 cut(s)	51, 87, 120, 618
TasI	AATT	3 cut(s)	381, 443, 480
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	3 cut(s)	191, 676, 925
TfiI	GAWTC	5 cut(s)	38, 260, 289, 363, 560
TseFI	GTSAC	2 cut(s)	139, 221
TseI	GCWGC	2 cut(s)	425, 550
Tsp45I	GTSAC	2 cut(s)	139, 221
TspDTI	ATGAA	2 cut(s)	203, 573
Van91I	CCANNNNNTGG	1 cut(s)	841
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	2 cut(s)	381, 443
XceI	RCATGY	2 cut(s)	324, 349
XcmI	CCANNNNNNNNNTGG	3 cut(s)	238, 766, 915
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	5 cut(s)	407, 422, 513, 542, 623
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.