Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003804.1

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Forward (+)

128501 .. 129385

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003804.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgctgatgggaaggggaatcccaaagggtgatgggattttgataaacatatgggagaaactagagcccaagtccctcgcagcactaagagatgagaaattcttgggccgatttgcgaatgtgtctgtctttccaattgggccgttgatgaggcccaacgtgtattccagcttgaggggtgatgtgtttgattggctagatgagcagcccaatgaatctgtgatttacgtgtcctttggaagcggtggggccctgtcatatgaacaaatggtcgagctagcttggggtttggagatgagtcaacagaggttcgtttgggtcattcggccgcctatcatatcatctgtcaatgaaacatttttcacagcagggaatcataatggcgagaacgacaatctaactaaatacttgcccaaggggtttttgggccgaaccaaggacattggatttgtcatccctttgtgggctccacaagtcgatatcttggcccatccatcagtcggacgatttttgacacattgcgggtggaactcaacccttgaaagcatcaccaacggagtaccaatgatagcttggccgctctacgctgagcagaggttgaatgctacgttgttgaaggaggagttaggggtggcagttcggtcaaagatacccctgtggaagaacgtggtgggcagagaagagatagaggaaatggtgaggaaaattatggaggacaaagaaggttttgcattgagagatagagctaagaatcttaaattcagtggtgcaaacgctttggaacaatgtggttcgtcttatgatgctctttctcagttcactaaacatgctgaaatgttggtacaatttgcaaatggtgttgatcatccttcccaagttccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

294

Amino Acids

32.94

Weight (kDa)

5.82

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	580
AciI	CCGC	4 cut(s)	243, 329, 522, 578
AcoI	YGGCCR	2 cut(s)	326, 575
AcsI	RAATTY	2 cut(s)	98, 758
AfaI	GTAC	2 cut(s)	561, 843
AfiI	CCNNNNNNNGG	4 cut(s)	174, 436, 463, 500
AflIII	ACRYGT	2 cut(s)	159, 228
AgsI	TTSAA	3 cut(s)	542, 601, 616
AluBI	AGCT	5 cut(s)	171, 277, 281, 572, 746
AluI	AGCT	5 cut(s)	171, 277, 281, 572, 746
AoxI	GGCC	8 cut(s)	106, 140, 152, 249, 326, 427, 486, 575
ApaI	GGGCCC	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	80, 205
ApoI	RAATTY	2 cut(s)	98, 758
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AspS9I	GGNCC	7 cut(s)	106, 140, 153, 249, 250, 427, 487
AsuHPI	GGTGA	4 cut(s)	41, 191, 541, 709
AsuNHI	GCTAGC	1 cut(s)	277
BaeGI	GKGCMC	1 cut(s)	253
BaeI	ACNNNNGTAYC	2 cut(s)	641, 674
BanII	GRGCYC	3 cut(s)	69, 253, 469
BbvI	GCAGC	2 cut(s)	92, 217
BccI	CCATC	3 cut(s)	26, 498, 502
BceAI	ACGGC	1 cut(s)	127
BclI	TGATCA	1 cut(s)	862
BfaI	CTAG	3 cut(s)	62, 197, 278
BisI	GCNGC	4 cut(s)	81, 206, 329, 578
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	4 cut(s)	82, 207, 330, 579
BmgT120I	GGNCC	7 cut(s)	106, 140, 153, 249, 250, 427, 487
BmiI	GGNNCC	3 cut(s)	250, 251, 468
BmsI	GCATC	2 cut(s)	555, 793
BmtI	GCTAGC	1 cut(s)	281
Bpu1102I	GCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	193
BsaAI	YACGTR	1 cut(s)	229
BsaJI	CCNNGG	2 cut(s)	414, 435
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 436, 463, 500
Bse3DI	GCAATG	1 cut(s)	517
BseDI	CCNNGG	2 cut(s)	414, 435
BseGI	GGATG	3 cut(s)	453, 490, 865
BseLI	CCNNNNNNNGG	4 cut(s)	174, 436, 463, 500
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	579, 827
BseRI	GAGGAG	1 cut(s)	635
BseSI	GKGCMC	1 cut(s)	253
BseX3I	CGGCCG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	92, 217
Bsh1285I	CGRYCG	1 cut(s)	329
BshFI	GGCC	8 cut(s)	108, 142, 154, 251, 328, 429, 488, 577
BsiEI	CGRYCG	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	4 cut(s)	174, 436, 463, 500
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	8 cut(s)	108, 142, 154, 251, 328, 429, 488, 577
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	3 cut(s)	69, 253, 469
Bsp143I	GATC	1 cut(s)	862
Bsp1720I	GCTNAGC	1 cut(s)	588
BspACI	CCGC	4 cut(s)	243, 329, 522, 578
BspANI	GGCC	8 cut(s)	108, 142, 154, 251, 328, 429, 488, 577
BspCNI	CTCAG	2 cut(s)	580, 826
BspLI	GGNNCC	3 cut(s)	250, 251, 468
BspOI	GCTAGC	1 cut(s)	281
BsrBI	CCGCTC	1 cut(s)	580
BsrDI	GCAATG	1 cut(s)	517
BssECI	CCNNGG	2 cut(s)	414, 435
BssMI	GATC	1 cut(s)	862
BssT1I	CCWWGG	2 cut(s)	414, 435
Bst6I	CTCTTC	1 cut(s)	675
BstBAI	YACGTR	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	4 cut(s)	86, 588, 747, 813
BstF5I	GGATG	3 cut(s)	453, 490, 865
BstKTI	GATC	1 cut(s)	865
BstMBI	GATC	1 cut(s)	862
BstMCI	CGRYCG	1 cut(s)	329
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	830
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	92, 217
BstZI	CGGCCG	1 cut(s)	326
BsuRI	GGCC	8 cut(s)	108, 142, 154, 251, 328, 429, 488, 577
BtsCI	GGATG	3 cut(s)	453, 490, 865
BtsIMutI	CAGTG	1 cut(s)	769
Cac8I	GCNNGC	1 cut(s)	279
Cfr13I	GGNCC	7 cut(s)	106, 140, 153, 249, 250, 427, 487
Csp6I	GTAC	2 cut(s)	560, 842
CviAII	CATG	1 cut(s)	827
CviQI	GTAC	2 cut(s)	560, 842
DdeI	CTNAG	4 cut(s)	86, 588, 747, 813
DpnI	GATC	1 cut(s)	864
DpnII	GATC	1 cut(s)	862
EaeI	YGGCCR	2 cut(s)	326, 575
EagI	CGGCCG	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
EclXI	CGGCCG	1 cut(s)	326
Eco130I	CCWWGG	2 cut(s)	414, 435
Eco24I	GRGCYC	3 cut(s)	69, 253, 469
Eco32I	GATATC	1 cut(s)	481
Eco52I	CGGCCG	1 cut(s)	326
EcoO109I	RGGNCCY	2 cut(s)	249, 250
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	414, 435
EcoT38I	GRGCYC	3 cut(s)	69, 253, 469
ErhI	CCWWGG	2 cut(s)	414, 435
FaeI	CATG	1 cut(s)	830
FaiI	YATR	9 cut(s)	50, 52, 259, 261, 338, 378, 710, 801, 828
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	1 cut(s)	826
FauI	CCCGC	1 cut(s)	515
FauNDI	CATATG	2 cut(s)	50, 259
FbaI	TGATCA	1 cut(s)	862
Fnu4HI	GCNGC	4 cut(s)	81, 206, 329, 578
FokI	GGATG	3 cut(s)	440, 477, 852
FriOI	GRGCYC	3 cut(s)	69, 253, 469
Fsp4HI	GCNGC	4 cut(s)	81, 206, 329, 578
FspBI	CTAG	3 cut(s)	62, 197, 278
GluI	GCNGC	4 cut(s)	81, 206, 329, 578
HaeIII	GGCC	8 cut(s)	108, 142, 154, 251, 328, 429, 488, 577
Hin1II	CATG	1 cut(s)	830
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HinfI	GANTC	5 cut(s)	18, 215, 298, 373, 751
HphI	GGTGA	4 cut(s)	41, 191, 541, 709
Hpy166II	GTNNAC	2 cut(s)	302, 819
Hpy188I	TCNGA	1 cut(s)	503
Hpy8I	GTNNAC	2 cut(s)	302, 819
HpyAV	CCTTC	4 cut(s)	6, 610, 716, 879
HpyCH4IV	ACGT	4 cut(s)	159, 228, 608, 666
HpyCH4V	TGCA	3 cut(s)	731, 770, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	4 cut(s)	86, 588, 747, 813
HpySE526I	ACGT	4 cut(s)	159, 228, 608, 666
Hsp92II	CATG	1 cut(s)	830
Ksp22I	TGATCA	1 cut(s)	862
Kzo9I	GATC	1 cut(s)	862
LmnI	GCTCC	1 cut(s)	472
LpnPI	CCDG	4 cut(s)	181, 266, 354, 668
Lsp1109I	GCAGC	2 cut(s)	92, 217
LweI	GCATC	2 cut(s)	555, 793
MaeI	CTAG	3 cut(s)	62, 197, 278
MaeII	ACGT	4 cut(s)	159, 228, 608, 666
MalI	GATC	1 cut(s)	864
MbiI	CCGCTC	1 cut(s)	580
MboI	GATC	1 cut(s)	862
MboII	GAAGA	2 cut(s)	673, 692
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	3 cut(s)	69, 253, 469
MluCI	AATT	5 cut(s)	98, 135, 705, 758, 845
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	9 cut(s)	86, 144, 168, 300, 588, 613, 682, 693, 706
MseI	TTAA	1 cut(s)	756
MunI	CAATTG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	607
MwoI	GCNNNNNNNGC	1 cut(s)	202
NdeI	CATATG	2 cut(s)	50, 259
NdeII	GATC	1 cut(s)	862
NheI	GCTAGC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	830
NlaIV	GGNNCC	3 cut(s)	250, 251, 468
NspI	RCATGY	1 cut(s)	830
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	4 cut(s)	18, 215, 373, 751
PkrI	GCNGC	4 cut(s)	82, 207, 330, 579
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
Ppu21I	YACGTR	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	250, 251, 468
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	7 cut(s)	106, 140, 153, 249, 250, 427, 487
RsaI	GTAC	2 cut(s)	561, 843
RsaNI	GTAC	2 cut(s)	560, 842
SaqAI	TTAA	1 cut(s)	756
SatI	GCNGC	4 cut(s)	81, 206, 329, 578
Sau3AI	GATC	1 cut(s)	862
Sau96I	GGNCC	7 cut(s)	106, 140, 153, 249, 250, 427, 487
SchI	GAGTC	1 cut(s)	307
SduI	GDGCHC	3 cut(s)	69, 253, 469
SfaNI	GCATC	2 cut(s)	555, 793
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	5 cut(s)	98, 135, 705, 758, 845
SsiI	CCGC	4 cut(s)	243, 329, 522, 578
SspMI	CTAG	3 cut(s)	62, 197, 278
StyI	CCWWGG	2 cut(s)	414, 435
TaiI	ACGT	4 cut(s)	162, 231, 611, 669
TaqI	TCGA	2 cut(s)	273, 477
TaqII	GACCGA	1 cut(s)	630
TasI	AATT	5 cut(s)	98, 135, 705, 758, 845
TauI	GCSGC	2 cut(s)	331, 580
TfiI	GAWTC	4 cut(s)	18, 215, 373, 751
Tru1I	TTAA	1 cut(s)	756
Tru9I	TTAA	1 cut(s)	756
TscAI	CASTG	1 cut(s)	769
TseI	GCWGC	2 cut(s)	80, 205
TspDTI	ATGAA	3 cut(s)	228, 276, 366
TspGWI	ACGGA	2 cut(s)	570, 870
TspRI	CASTG	1 cut(s)	769
XapI	RAATTY	2 cut(s)	98, 758
XceI	RCATGY	1 cut(s)	830
XcmI	CCANNNNNNNNNTGG	2 cut(s)	421, 570
XspI	CTAG	3 cut(s)	62, 197, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.