Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

41749807 .. 41750652

Gene Structure 846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029636

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGAGGAACTAGAGCCCAAGTCATTTGGGAGCAGCAAGAGATAGAAATTCTTGGGCCAATTTGCAAGCATATGCTGATGGGAAGAGAAAACCCAAAGGGTGATGGTATTTTGATAAACATATGGGAGGAACTAGAGCCAAAGTCCCTAGCAGGGCTACGAGATGAGAAATTCTTGGGTCGATTTGCGAATGTGCCGGTCTTTCCAATTGGGCCGTTGATAAGGCCCAATGTGTCTTCCAACCCGAGGGGTGATGTGTTTGATTTGCTAGATGAGCAGCCCAATGAATATGTGATTTATGTGTCCTTTGAAAGCGGTGGGGCCCAGTCATACGAGCAAATGGTTGAGCTAGCTTGGGTAGCAAATCACAGTGGCGAGGATGACAATCTAACTAGGTACTTGTCCAAACGGTTTTTGGGCCGAACCAAAGACATTGGGTATGTTATCCCTTTGTGGGCTCTGCAAGCAGATATCTTGGCCTATCCATCAGTCGGAGGGTTTTTGACACTTTATGGGTGGAACTCAACTCTTGAAAGCATCACTAATGGAGTACTAATGATCGCTTGGTTGCTCTATGTCGAGCAGAGGTTGAATGACACGTTGTTGAAGGAGGAGCTAGGGGTGGCAGTTCGGTCAAAGATACCACCATGGAAGAACGTGGTGGAGATAGAAGAGATAGAGGAAATGGTGAGGAAGATCATGGAGGACAAAGAAGGTTTTGCATTGAGAGATAGAGCCAAGAACCTTAAATCATTCTTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

255

Amino Acids

28.84

Weight (kDa)

4.89

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	148 - 205	1.6e-08	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	315
AcsI	RAATTY	2 cut(s)	48, 170
AfaI	GTAC	2 cut(s)	398, 552
AfiI	CCNNNNNNNGG	4 cut(s)	153, 246, 454, 491
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	4 cut(s)	311, 533, 592, 607
AluBI	AGCT	3 cut(s)	349, 353, 616
AluI	AGCT	3 cut(s)	349, 353, 616
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	6 cut(s)	56, 212, 224, 321, 418, 477
ApaI	GGGCCC	1 cut(s)	325
ApeKI	GCWGC	2 cut(s)	34, 277
ApoI	RAATTY	2 cut(s)	48, 170
AspS9I	GGNCC	6 cut(s)	56, 212, 225, 321, 322, 418
AsuHPI	GGTGA	3 cut(s)	113, 263, 700
AsuNHI	GCTAGC	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	325
BanII	GRGCYC	3 cut(s)	19, 325, 460
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	46, 289
BccI	CCATC	3 cut(s)	73, 98, 493
BceAI	ACGGC	1 cut(s)	199
BfaI	CTAG	7 cut(s)	12, 134, 149, 269, 350, 393, 617
BisI	GCNGC	2 cut(s)	35, 278
BlsI	GCNGC	2 cut(s)	36, 279
BmcAI	AGTACT	1 cut(s)	552
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	6 cut(s)	56, 212, 225, 321, 322, 418
BmiI	GGNNCC	2 cut(s)	322, 323
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	1 cut(s)	546
BmtI	GCTAGC	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	245, 647
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 246, 454, 491
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	325
Bse8I	GATNNNNATC	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	245, 647
BseGI	GGATG	1 cut(s)	385
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	4 cut(s)	153, 246, 454, 491
BseNI	ACTGG	1 cut(s)	325
BseRI	GAGGAG	1 cut(s)	626
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	2 cut(s)	46, 289
BshFI	GGCC	6 cut(s)	58, 214, 226, 323, 420, 479
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	4 cut(s)	153, 246, 454, 491
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	6 cut(s)	58, 214, 226, 323, 420, 479
BsoBI	CYCGRG	1 cut(s)	244
Bsp120I	GGGCCC	1 cut(s)	321
Bsp1286I	GDGCHC	3 cut(s)	19, 325, 460
Bsp143I	GATC	2 cut(s)	558, 696
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	6 cut(s)	58, 214, 226, 323, 420, 479
BspLI	GGNNCC	2 cut(s)	322, 323
BspOI	GCTAGC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	245, 647
BssMI	GATC	2 cut(s)	558, 696
BssT1I	CCWWGG	1 cut(s)	647
Bst4CI	ACNGT	2 cut(s)	371, 411
Bst6I	CTCTTC	2 cut(s)	79, 666
BstC8I	GCNNGC	3 cut(s)	68, 351, 465
BstDEI	CTNAG	1 cut(s)	757
BstDSI	CCRYGG	1 cut(s)	647
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	2 cut(s)	561, 699
BstMBI	GATC	2 cut(s)	558, 696
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 359, 464
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	46, 289
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	6 cut(s)	58, 214, 226, 323, 420, 479
BtgI	CCRYGG	1 cut(s)	647
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	3 cut(s)	68, 351, 465
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	6 cut(s)	56, 212, 225, 321, 322, 418
Csp6I	GTAC	2 cut(s)	397, 551
CviAII	CATG	2 cut(s)	648, 700
CviQI	GTAC	2 cut(s)	397, 551
DdeI	CTNAG	1 cut(s)	757
DpnI	GATC	2 cut(s)	560, 698
DpnII	GATC	2 cut(s)	558, 696
Eam1104I	CTCTTC	2 cut(s)	79, 666
EarI	CTCTTC	2 cut(s)	79, 666
Eco130I	CCWWGG	1 cut(s)	647
Eco24I	GRGCYC	3 cut(s)	19, 325, 460
Eco32I	GATATC	1 cut(s)	472
Eco88I	CYCGRG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRV	GATATC	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	647
EcoT38I	GRGCYC	3 cut(s)	19, 325, 460
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	2 cut(s)	651, 703
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	2 cut(s)	647, 699
FauNDI	CATATG	2 cut(s)	72, 122
Fnu4HI	GCNGC	2 cut(s)	35, 278
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	3 cut(s)	19, 325, 460
Fsp4HI	GCNGC	2 cut(s)	35, 278
FspBI	CTAG	7 cut(s)	12, 134, 149, 269, 350, 393, 617
GluI	GCNGC	2 cut(s)	35, 278
HaeIII	GGCC	6 cut(s)	58, 214, 226, 323, 420, 479
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	2 cut(s)	651, 703
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	3 cut(s)	113, 263, 700
Hpy188I	TCNGA	1 cut(s)	494
Hpy188III	TCNNGA	1 cut(s)	530
HpyAV	CCTTC	2 cut(s)	601, 707
HpyCH4III	ACNGT	2 cut(s)	371, 411
HpyCH4IV	ACGT	2 cut(s)	599, 657
HpyCH4V	TGCA	3 cut(s)	66, 463, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 359, 464
HpyF3I	CTNAG	1 cut(s)	757
HpySE526I	ACGT	2 cut(s)	599, 657
Hsp92II	CATG	2 cut(s)	651, 703
Kzo9I	GATC	2 cut(s)	558, 696
LmnI	GCTCC	2 cut(s)	31, 613
LpnPI	CCDG	3 cut(s)	138, 210, 338
Lsp1109I	GCAGC	2 cut(s)	46, 289
LweI	GCATC	1 cut(s)	546
MaeI	CTAG	7 cut(s)	12, 134, 149, 269, 350, 393, 617
MaeII	ACGT	2 cut(s)	599, 657
MalI	GATC	2 cut(s)	560, 698
MboI	GATC	2 cut(s)	558, 696
MboII	GAAGA	5 cut(s)	96, 228, 664, 683, 706
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	3 cut(s)	19, 325, 460
MluCI	AATT	4 cut(s)	48, 60, 170, 207
MmeI	TCCRAC	2 cut(s)	264, 472
MnlI	CCTC	9 cut(s)	121, 240, 370, 488, 579, 604, 673, 684, 697
MseI	TTAA	1 cut(s)	747
MspI	CCGG	1 cut(s)	197
MunI	CAATTG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	274, 359, 464
NcoI	CCATGG	1 cut(s)	647
NdeI	CATATG	2 cut(s)	72, 122
NdeII	GATC	2 cut(s)	558, 696
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	2 cut(s)	651, 703
NlaIV	GGNNCC	2 cut(s)	322, 323
PkrI	GCNGC	2 cut(s)	36, 279
PspN4I	GGNNCC	2 cut(s)	322, 323
PspOMI	GGGCCC	1 cut(s)	321
PspPI	GGNCC	6 cut(s)	56, 212, 225, 321, 322, 418
RsaI	GTAC	2 cut(s)	398, 552
RsaNI	GTAC	2 cut(s)	397, 551
SaqAI	TTAA	1 cut(s)	747
SatI	GCNGC	2 cut(s)	35, 278
Sau3AI	GATC	2 cut(s)	558, 696
Sau96I	GGNCC	6 cut(s)	56, 212, 225, 321, 322, 418
ScaI	AGTACT	1 cut(s)	552
SduI	GDGCHC	3 cut(s)	19, 325, 460
SetI	ASST	9 cut(s)	351, 355, 398, 590, 602, 618, 660, 718, 747
SfaNI	GCATC	1 cut(s)	546
Sse9I	AATT	4 cut(s)	48, 60, 170, 207
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	7 cut(s)	12, 134, 149, 269, 350, 393, 617
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	2 cut(s)	371, 411
TaiI	ACGT	2 cut(s)	602, 660
TaqI	TCGA	2 cut(s)	181, 579
TaqII	GACCGA	1 cut(s)	621
TasI	AATT	4 cut(s)	48, 60, 170, 207
TatI	WGTACW	1 cut(s)	550
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	2 cut(s)	34, 277
TspDTI	ATGAA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	376
XapI	RAATTY	2 cut(s)	48, 170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XspI	CTAG	7 cut(s)	12, 134, 149, 269, 350, 393, 617
ZrmI	AGTACT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.