Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000822

Physical Location & Seq

Genomic Coordinates Reverse (-)

14698698 .. 14702202

Gene Structure 3505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG156900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAGTAGTTCAAACTCAAAGCTACATGCAGCGATACTCAGCAGTCCAGGATTGGGCCACATCATTCCGGTCCTCGAGCTCGGAAAACGTCTCGTCGCCGCCGACCAAAACATCGCCGTAACAATTTTCGCCATGTCTCCCACGTCACAAGCCGAATCCCAAACCATCAAAGCAGCCTCTACCCCGAAACTCAACGTCGTAGAGCTCCCTCCGGTCGACATCTCTGGCCTCGTCGACCCAAAAGCCGCCGTAGTCACGTGCCTTTCCGTCATGATGAGAGAGGTACGACCTGCGTTCCGGTCGGCTCTCCGCGACATGGCTTCTCCTCCTACCATGCTCATCGTGGACCTCTTCGGCACCGAATCCTTGCCTATCGGCGACGAGCTAGGGATTCCCAAGTACGTTTATGTTGCTTCCAATGCATGGTTTCTCGCTCTCATGATGTACTCTCCAACCCTGGACAAGGAAGTGGAAGGAGAATACGTGGACCAGACCGAACCGCTCAAAATTCCAGGTTGTAGGGCACTTCGGCCTGAAGACGTGGTTGACCCGATGCTGGACCGGACCAATCAGCAATATTCTGAATACATACGATTTTGTGCTGAGATTCCACTCGGTGATGGGATTTTGCTGAATATTTGGGAGGAGTTGCAGCCTACAACACTAGCTGCGTTTAGAGATGAAAAACTATTGGGTGGAGTGACTAAAATGGTGCCTGTTTATCCAATTGGACCGTTAACTAGATCGGTCCAATCGGGTTGTCCGAGGGTTAATGAGGACTTGTTTGATTGGCTTGACAAACAACCCAGTGAGTCGGTGATATTTGTGTCTTTAGGGAGTGGAGGAACACTGTCTTATGACCAAATGACAGAGATGGCTTGGGGTTTGGAGTTGAGCCAACAACGATTCATCTGGGTTGTACGGCCACCCACAACAAAATCAGATGCTGCCTTTTTCACTTCAGGAAATGGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

325

Amino Acids

35.52

Weight (kDa)

4.73

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18560 AT2G18570 AT3G50740 AT5G26310 AT5G66690
fragaria_vesca	FvH4_1g14012 FvH4_1g14013
malus_domestica	MD02G1153000.v1.1 MD02G1153100.v1.1 MD02G1153200.v1.1 MD02G1153300.v1.1 MD02G1153400.v1.1 MD02G1153500.v1.1 MD02G1153700.v1.1 MD02G1153800.v1.1 MD02G1153900.v1.1 MD15G1267300.v1.1
prunus_persica	Prupe.7G149100_v2.0.a1 Prupe.7G149200_v2.0.a1
pyrus_communis	pycom02g12070 pycom02g12100 pycom02g12110 pycom15g23300
rosa_chinensis	RchiOBHm_Chr2g0102351 RchiOBHm_Chr2g0102361 RchiOBHm_Chr2g0102371 RchiOBHm_Chr2g0102411 RchiOBHm_Chr2g0102421 RchiOBHm_Chr2g0102591
rosa_laevigata	RLG00000017148 RLG00000017157 RLG00000029634 RLG00000029636
rosa_multiflora	Rmu_co8411463.1_g000001 Rmu_sc0003277.1_g000008 Rmu_sc0003804.1_g000011 Rmu_sc0003804.1_g000024 Rmu_sc0003804.1_g000033 Rmu_sc0005055.1_g000003
rosa_roxburghii	Rroxscaffold_2G00140450 Rroxscaffold_2G00140510 Rroxscaffold_2G00140530
rosa_rugosa	Rorug02G0106900 Rorug02G0107200 Rorug02G0107600 Rorug02G0107900
rosa_samantha	Rh2AG154800 Rh2AG155000 Rh2AG155200 Rh2AG155800 Rh2AG156900 Rh2BG161000 Rh2BG161400 Rh2BG161600 Rh2BG162200 Rh2BG163200 Rh2CG160500 Rh2CG160600 Rh2CG160900 Rh2CG162000 Rh2DG160400 Rh2DG160600 Rh2DG160800 Rh2DG161300 Rh2DG161500 Rh2DG162100
rosa_wichuraiana	Rw2G012120 Rw2G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	298
AccB1I	GGYRCC	2 cut(s)	356, 712
AccB7I	CCANNNNNTGG	1 cut(s)	423
AccBSI	CCGCTC	1 cut(s)	502
AccI	GTMKAC	2 cut(s)	216, 234
AccII	CGCG	1 cut(s)	312
AciI	CCGC	4 cut(s)	99, 246, 310, 500
AcoI	YGGCCR	1 cut(s)	923
AcsI	RAATTY	1 cut(s)	507
AcuI	CTGAAG	2 cut(s)	555, 945
AcvI	CACGTG	1 cut(s)	258
AdeI	CACNNNGTG	1 cut(s)	617
AfaI	GTAC	4 cut(s)	285, 401, 446, 921
AfiI	CCNNNNNNNGG	5 cut(s)	53, 316, 423, 463, 556
AgsI	TTSAA	1 cut(s)	12
AjiI	CACGTC	2 cut(s)	144, 541
AjnI	CCWGG	3 cut(s)	46, 456, 511
AluBI	AGCT	5 cut(s)	22, 79, 205, 385, 668
AluI	AGCT	5 cut(s)	22, 79, 205, 385, 668
Alw21I	GWGCWC	2 cut(s)	81, 207
Alw26I	GTCTC	2 cut(s)	95, 141
AlwNI	CAGNNNCTG	1 cut(s)	947
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	5 cut(s)	55, 226, 530, 923, 971
ApeKI	GCWGC	5 cut(s)	29, 173, 652, 668, 947
ApoI	RAATTY	1 cut(s)	507
AspS9I	GGNCC	9 cut(s)	55, 70, 346, 487, 559, 564, 731, 748, 971
AsuHPI	GGTGA	2 cut(s)	629, 829
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	7 cut(s)	70, 346, 487, 559, 564, 731, 748
BaeGI	GKGCMC	1 cut(s)	526
BanI	GGYRCC	2 cut(s)	356, 712
BanII	GRGCYC	2 cut(s)	81, 207
BbrPI	CACGTG	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	543
Bbv12I	GWGCWC	2 cut(s)	81, 207
BbvI	GCAGC	5 cut(s)	41, 185, 655, 664, 934
BccI	CCATC	3 cut(s)	173, 614, 868
BceAI	ACGGC	3 cut(s)	101, 233, 938
BciT130I	CCWGG	3 cut(s)	48, 458, 513
BcoDI	GTCTC	2 cut(s)	95, 141
BfaI	CTAG	3 cut(s)	386, 665, 741
BfuAI	ACCTGC	1 cut(s)	298
BisI	GCNGC	7 cut(s)	30, 99, 174, 246, 653, 669, 948
BlsI	GCNGC	7 cut(s)	31, 100, 175, 247, 654, 670, 949
Bme1390I	CCNGG	3 cut(s)	48, 458, 513
Bme18I	GGWCC	7 cut(s)	70, 346, 487, 559, 564, 731, 748
BmeT110I	CYCGRG	1 cut(s)	74
BmgBI	CACGTC	2 cut(s)	144, 541
BmgT120I	GGNCC	9 cut(s)	55, 70, 346, 487, 559, 564, 731, 748, 971
BmiI	GGNNCC	2 cut(s)	358, 714
BmrFI	CCNGG	3 cut(s)	48, 458, 513
BmrI	ACTGGG	1 cut(s)	801
BmsI	GCATC	2 cut(s)	543, 934
BmuI	ACTGGG	1 cut(s)	801
BpiI	GAAGAC	1 cut(s)	543
BsaAI	YACGTR	2 cut(s)	258, 484
BsaJI	CCNNGG	2 cut(s)	456, 764
BsaWI	WCCGGW	4 cut(s)	67, 211, 297, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 316, 423, 463, 556
Bse1I	ACTGG	1 cut(s)	807
BseBI	CCWGG	3 cut(s)	48, 458, 513
BseDI	CCNNGG	2 cut(s)	456, 764
BseLI	CCNNNNNNNGG	5 cut(s)	53, 316, 423, 463, 556
BseMII	CTCAG	2 cut(s)	52, 594
BseNI	ACTGG	1 cut(s)	807
BseRI	GAGGAG	2 cut(s)	315, 659
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	5 cut(s)	41, 185, 655, 664, 934
Bsh1236I	CGCG	1 cut(s)	312
Bsh1285I	CGRYCG	2 cut(s)	216, 302
BshFI	GGCC	5 cut(s)	57, 228, 532, 925, 973
BshNI	GGYRCC	2 cut(s)	356, 712
BsiEI	CGRYCG	2 cut(s)	216, 302
BsiHKAI	GWGCWC	2 cut(s)	81, 207
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	4 cut(s)	68, 212, 298, 562
BslI	CCNNNNNNNGG	5 cut(s)	53, 316, 423, 463, 556
BsmAI	GTCTC	2 cut(s)	95, 141
BsmBI	CGTCTC	1 cut(s)	95
BsnI	GGCC	5 cut(s)	57, 228, 532, 925, 973
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	3 cut(s)	81, 207, 526
Bsp143I	GATC	1 cut(s)	743
BspACI	CCGC	4 cut(s)	99, 246, 310, 500
BspANI	GGCC	5 cut(s)	57, 228, 532, 925, 973
BspCNI	CTCAG	2 cut(s)	51, 595
BspFNI	CGCG	1 cut(s)	312
BspHI	TCATGA	2 cut(s)	270, 438
BspLI	GGNNCC	2 cut(s)	358, 714
BspMI	ACCTGC	1 cut(s)	298
BspT107I	GGYRCC	2 cut(s)	356, 712
BsrBI	CCGCTC	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	807
BssECI	CCNNGG	2 cut(s)	456, 764
BssMI	GATC	1 cut(s)	743
Bst2UI	CCWGG	3 cut(s)	48, 458, 513
Bst4CI	ACNGT	2 cut(s)	735, 852
Bst6I	CTCTTC	1 cut(s)	356
BstBAI	YACGTR	2 cut(s)	258, 484
BstDEI	CTNAG	2 cut(s)	38, 603
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstFNI	CGCG	1 cut(s)	312
BstKTI	GATC	1 cut(s)	746
BstMAI	GTCTC	2 cut(s)	95, 141
BstMBI	GATC	1 cut(s)	743
BstMCI	CGRYCG	2 cut(s)	216, 302
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	3 cut(s)	48, 458, 513
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	3 cut(s)	46, 456, 511
BstSLI	GKGCMC	1 cut(s)	526
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	5 cut(s)	41, 185, 655, 664, 934
BstV2I	GAAGAC	1 cut(s)	543
BsuRI	GGCC	5 cut(s)	57, 228, 532, 925, 973
BtgZI	GCGATG	1 cut(s)	97
BtrI	CACGTC	2 cut(s)	144, 541
BtsIMutI	CAGTG	2 cut(s)	814, 848
BveI	ACCTGC	1 cut(s)	298
CaiI	CAGNNNCTG	1 cut(s)	947
CciI	TCATGA	2 cut(s)	270, 438
Cfr13I	GGNCC	9 cut(s)	55, 70, 346, 487, 559, 564, 731, 748, 971
Csp6I	GTAC	4 cut(s)	284, 400, 445, 920
CviAII	CATG	8 cut(s)	26, 133, 271, 316, 334, 423, 439, 975
CviQI	GTAC	4 cut(s)	284, 400, 445, 920
DdeI	CTNAG	2 cut(s)	38, 603
DpnI	GATC	1 cut(s)	745
DpnII	GATC	1 cut(s)	743
DraIII	CACNNNGTG	1 cut(s)	617
EaeI	YGGCCR	1 cut(s)	923
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Ecl136II	GAGCTC	2 cut(s)	79, 205
Eco24I	GRGCYC	2 cut(s)	81, 207
Eco47I	GGWCC	7 cut(s)	70, 346, 487, 559, 564, 731, 748
Eco53kI	GAGCTC	2 cut(s)	79, 205
Eco57I	CTGAAG	2 cut(s)	555, 945
Eco72I	CACGTG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	2 cut(s)	79, 205
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoRII	CCWGG	3 cut(s)	46, 456, 511
EcoT22I	ATGCAT	1 cut(s)	424
EcoT38I	GRGCYC	2 cut(s)	81, 207
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	8 cut(s)	29, 136, 274, 319, 337, 426, 442, 978
FatI	CATG	8 cut(s)	25, 132, 270, 315, 333, 422, 438, 974
FblI	GTMKAC	2 cut(s)	216, 234
Fnu4HI	GCNGC	7 cut(s)	30, 99, 174, 246, 653, 669, 948
FriOI	GRGCYC	2 cut(s)	81, 207
Fsp4HI	GCNGC	7 cut(s)	30, 99, 174, 246, 653, 669, 948
FspBI	CTAG	3 cut(s)	386, 665, 741
GluI	GCNGC	7 cut(s)	30, 99, 174, 246, 653, 669, 948
HaeIII	GGCC	5 cut(s)	57, 228, 532, 925, 973
HapII	CCGG	4 cut(s)	68, 212, 298, 562
Hin1II	CATG	8 cut(s)	29, 136, 274, 319, 337, 426, 442, 978
HincII	GTYRAC	4 cut(s)	217, 235, 547, 738
HindII	GTYRAC	4 cut(s)	217, 235, 547, 738
HinfI	GANTC	6 cut(s)	155, 362, 391, 607, 812, 906
HpaI	GTTAAC	1 cut(s)	738
HpaII	CCGG	4 cut(s)	68, 212, 298, 562
HphI	GGTGA	2 cut(s)	629, 829
Hpy166II	GTNNAC	6 cut(s)	217, 235, 346, 487, 547, 738
Hpy188I	TCNGA	4 cut(s)	83, 583, 765, 943
Hpy188III	TCNNGA	3 cut(s)	271, 439, 963
Hpy8I	GTNNAC	6 cut(s)	217, 235, 346, 487, 547, 738
Hpy99I	CGWCG	4 cut(s)	98, 200, 236, 383
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	2 cut(s)	735, 852
HpyCH4IV	ACGT	7 cut(s)	88, 143, 195, 257, 402, 483, 540
HpyCH4V	TGCA	3 cut(s)	29, 422, 652
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	2 cut(s)	38, 603
HpySE526I	ACGT	7 cut(s)	88, 143, 195, 257, 402, 483, 540
Hsp92II	CATG	8 cut(s)	29, 136, 274, 319, 337, 426, 442, 978
KspAI	GTTAAC	1 cut(s)	738
Kzo9I	GATC	1 cut(s)	743
LmnI	GCTCC	1 cut(s)	210
Lsp1109I	GCAGC	5 cut(s)	41, 185, 655, 664, 934
LweI	GCATC	2 cut(s)	543, 934
MaeI	CTAG	3 cut(s)	386, 665, 741
MaeII	ACGT	7 cut(s)	88, 143, 195, 257, 402, 483, 540
MaeIII	GTNAC	4 cut(s)	118, 144, 253, 700
MalI	GATC	1 cut(s)	745
MbiI	CCGCTC	1 cut(s)	502
MboI	GATC	1 cut(s)	743
MboII	GAAGA	2 cut(s)	343, 548
MfeI	CAATTG	1 cut(s)	726
MhlI	GDGCHC	3 cut(s)	81, 207, 526
MluCI	AATT	3 cut(s)	123, 507, 726
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	1 cut(s)	476
Mph1103I	ATGCAT	1 cut(s)	424
MseI	TTAA	2 cut(s)	737, 771
MspI	CCGG	4 cut(s)	68, 212, 298, 562
MspR9I	CCNGG	3 cut(s)	48, 458, 513
MunI	CAATTG	1 cut(s)	726
MvaI	CCWGG	3 cut(s)	48, 458, 513
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeII	GATC	1 cut(s)	743
NlaIII	CATG	8 cut(s)	29, 136, 274, 319, 337, 426, 442, 978
NlaIV	GGNNCC	2 cut(s)	358, 714
NmuCI	GTSAC	3 cut(s)	144, 253, 700
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	1 cut(s)	29
PaeR7I	CTCGAG	1 cut(s)	74
PagI	TCATGA	2 cut(s)	270, 438
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 761
PfeI	GAWTC	5 cut(s)	155, 362, 391, 607, 906
PflMI	CCANNNNNTGG	1 cut(s)	423
PfoI	TCCNGGA	1 cut(s)	46
PkrI	GCNGC	7 cut(s)	31, 100, 175, 247, 654, 670, 949
PleI	GAGTC	1 cut(s)	820
PmaCI	CACGTG	1 cut(s)	258
PmlI	CACGTG	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	820
Ppu21I	YACGTR	2 cut(s)	258, 484
Psp124BI	GAGCTC	2 cut(s)	81, 207
Psp6I	CCWGG	3 cut(s)	46, 456, 511
PspCI	CACGTG	1 cut(s)	258
PspGI	CCWGG	3 cut(s)	46, 456, 511
PspN4I	GGNNCC	2 cut(s)	358, 714
PspPI	GGNCC	9 cut(s)	55, 70, 346, 487, 559, 564, 731, 748, 971
PspXI	VCTCGAGB	1 cut(s)	74
PstNI	CAGNNNCTG	1 cut(s)	947
RsaI	GTAC	4 cut(s)	285, 401, 446, 921
RsaNI	GTAC	4 cut(s)	284, 400, 445, 920
SacI	GAGCTC	2 cut(s)	81, 207
SalI	GTCGAC	2 cut(s)	215, 233
SaqAI	TTAA	2 cut(s)	737, 771
SatI	GCNGC	7 cut(s)	30, 99, 174, 246, 653, 669, 948
Sau3AI	GATC	1 cut(s)	743
Sau96I	GGNCC	9 cut(s)	55, 70, 346, 487, 559, 564, 731, 748, 971
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	3 cut(s)	48, 458, 513
SduI	GDGCHC	3 cut(s)	81, 207, 526
SfaNI	GCATC	2 cut(s)	543, 934
Sfr274I	CTCGAG	1 cut(s)	74
SinI	GGWCC	7 cut(s)	70, 346, 487, 559, 564, 731, 748
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	3 cut(s)	123, 507, 726
SsiI	CCGC	4 cut(s)	99, 246, 310, 500
SspI	AATATT	2 cut(s)	578, 637
SspMI	CTAG	3 cut(s)	386, 665, 741
SstI	GAGCTC	2 cut(s)	81, 207
StyD4I	CCNGG	3 cut(s)	46, 456, 511
TaaI	ACNGT	2 cut(s)	735, 852
TaiI	ACGT	7 cut(s)	91, 146, 198, 260, 405, 486, 543
TaqI	TCGA	3 cut(s)	75, 216, 234
TaqII	GACCGA	2 cut(s)	509, 736
TasI	AATT	3 cut(s)	123, 507, 726
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	2 cut(s)	101, 248
TfiI	GAWTC	5 cut(s)	155, 362, 391, 607, 906
Tru1I	TTAA	2 cut(s)	737, 771
Tru9I	TTAA	2 cut(s)	737, 771
TscAI	CASTG	2 cut(s)	814, 855
TseFI	GTSAC	3 cut(s)	144, 253, 700
TseI	GCWGC	5 cut(s)	29, 173, 652, 668, 947
Tsp45I	GTSAC	3 cut(s)	144, 253, 700
TspDTI	ATGAA	2 cut(s)	696, 898
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	2 cut(s)	814, 855
Van91I	CCANNNNNTGG	1 cut(s)	423
VpaK11BI	GGWCC	7 cut(s)	70, 346, 487, 559, 564, 731, 748
XagI	CCTNNNNNAGG	1 cut(s)	461
XapI	RAATTY	1 cut(s)	507
XceI	RCATGY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	74
XmiI	GTMKAC	2 cut(s)	216, 234
XspI	CTAG	3 cut(s)	386, 665, 741
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.