Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Forward (+)

9844134 .. 9845385

Gene Structure 1252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G23130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGACTCGCAATATTCTCTTGACGGTTACATTGATCTGCATTGTTTTCATCACCGTCGGTGGCCAATCTCCGGCCACCGCACCGATCCATTCTCCTTCTACATCTCCTCATAAGCCTAAACCCACATCTCCCGCCATTTCTCCAGCTGCTCCAACGCCGGAATCCACGGAGGCTCCGGCGAAGACTCCGGTAGAAGCACCTGTAGAGGCTCCTCCTTCTCCTACACCTGCTTCTACACCTCAGATCTCTCCGCCCGCTCCTTCACCGGAGGCTGATACTCCTTCAGCTCCGGAGATTGCACCTTCAGCTGATGTTCCGGCTCCAGCTCTGACAAAACATAAGAAGAAGACAAAGAAGCATAAGACCGCTCCGGCTCCTGGACCAGCTTCGGAGCTTTTAAGCCCGCCTGCTCCGCCCGGAGAAGCTCCTGGTCCTGGACCAAGCGATGCTTTCTCTCCTGCCGCTGACGATCAGAGCGGAGCACAAAGAATAAGTGTTGTGATACAAATGGTGGGAGCTGCGGCAATCGCATGGTCTCTACTTGTTCTAGCCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009987 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0031224 GO:0031225 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044425 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

18.48

Weight (kDa)

6.4

Isoelectric Point (pI)

88.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AccBSI	CCGCTC	3 cut(s)	257, 368, 477
AccIII	TCCGGA	1 cut(s)	289
AclWI	GGATC	1 cut(s)	79
AcoI	YGGCCR	2 cut(s)	61, 72
AcuI	CTGAAG	2 cut(s)	267, 288
AfiI	CCNNNNNNNGG	3 cut(s)	70, 377, 434
AjnI	CCWGG	3 cut(s)	376, 427, 433
AluBI	AGCT	8 cut(s)	146, 287, 308, 326, 386, 394, 425, 518
AluI	AGCT	8 cut(s)	146, 287, 308, 326, 386, 394, 425, 518
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	1 cut(s)	79
Aor13HI	TCCGGA	1 cut(s)	289
AoxI	GGCC	2 cut(s)	61, 72
ApeKI	GCWGC	2 cut(s)	146, 518
AspS9I	GGNCC	3 cut(s)	380, 431, 437
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	2 cut(s)	43, 255
AvaII	GGWCC	3 cut(s)	380, 431, 437
BalI	TGGCCA	1 cut(s)	63
BbsI	GAAGAC	2 cut(s)	188, 353
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	2 cut(s)	133, 505
BciT130I	CCWGG	3 cut(s)	378, 429, 435
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	1 cut(s)	548
BfmI	CTRYAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	235
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	4 cut(s)	147, 462, 519, 522
BlsI	GCNGC	4 cut(s)	148, 463, 520, 523
Bme1390I	CCNGG	4 cut(s)	378, 417, 429, 435
Bme18I	GGWCC	3 cut(s)	380, 431, 437
BmgT120I	GGNCC	3 cut(s)	380, 431, 437
BmiI	GGNNCC	4 cut(s)	174, 210, 321, 375
BmrFI	CCNGG	4 cut(s)	378, 417, 429, 435
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	2 cut(s)	188, 353
BpmI	CTGGAG	2 cut(s)	126, 306
BpuMI	CCSGG	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	540
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	3 cut(s)	187, 265, 289
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 377, 434
BseAI	TCCGGA	1 cut(s)	289
BseBI	CCWGG	3 cut(s)	378, 429, 435
BseDI	CCNNGG	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	70, 377, 434
BseMII	CTCAG	1 cut(s)	254
BseRI	GAGGAG	2 cut(s)	96, 201
BseXI	GCAGC	2 cut(s)	133, 505
BshFI	GGCC	2 cut(s)	63, 74
BsiHKAI	GWGCWC	1 cut(s)	484
BsiSI	CCGG	9 cut(s)	71, 158, 176, 188, 266, 290, 317, 371, 417
BslI	CCNNNNNNNGG	3 cut(s)	70, 377, 434
BsmAI	GTCTC	1 cut(s)	540
BsnI	GGCC	2 cut(s)	63, 74
Bso31I	GGTCTC	1 cut(s)	540
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp13I	TCCGGA	1 cut(s)	289
Bsp143I	GATC	4 cut(s)	33, 84, 243, 469
BspANI	GGCC	2 cut(s)	63, 74
BspCNI	CTCAG	1 cut(s)	253
BspEI	TCCGGA	1 cut(s)	289
BspLI	GGNNCC	4 cut(s)	174, 210, 321, 375
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	540
BsrBI	CCGCTC	3 cut(s)	257, 368, 477
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	4 cut(s)	33, 84, 243, 469
Bst2UI	CCWGG	3 cut(s)	378, 429, 435
Bst4CI	ACNGT	2 cut(s)	25, 55
BstC8I	GCNNGC	3 cut(s)	255, 404, 408
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	165
BstKTI	GATC	4 cut(s)	36, 87, 246, 472
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	4 cut(s)	33, 84, 243, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 412, 527
BstNI	CCWGG	3 cut(s)	378, 429, 435
BstSCI	CCNGG	4 cut(s)	376, 415, 427, 433
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	133, 505
BstV2I	GAAGAC	2 cut(s)	188, 353
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	63, 74
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	459
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	3 cut(s)	255, 404, 408
Cfr13I	GGNCC	3 cut(s)	380, 431, 437
CviAII	CATG	1 cut(s)	531
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	4 cut(s)	35, 86, 245, 471
DpnII	GATC	4 cut(s)	33, 84, 243, 469
EaeI	YGGCCR	2 cut(s)	61, 72
EciI	GGCGGA	2 cut(s)	240, 402
Eco31I	GGTCTC	1 cut(s)	540
Eco47I	GGWCC	3 cut(s)	380, 431, 437
Eco57I	CTGAAG	2 cut(s)	267, 288
EcoRII	CCWGG	3 cut(s)	376, 427, 433
FaeI	CATG	1 cut(s)	534
FaiI	YATR	4 cut(s)	111, 339, 360, 532
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FatI	CATG	1 cut(s)	530
FauI	CCCGC	3 cut(s)	139, 262, 411
Fnu4HI	GCNGC	4 cut(s)	147, 462, 519, 522
Fsp4HI	GCNGC	4 cut(s)	147, 462, 519, 522
FspBI	CTAG	1 cut(s)	548
GluI	GCNGC	4 cut(s)	147, 462, 519, 522
GsuI	CTGGAG	2 cut(s)	126, 306
HaeIII	GGCC	2 cut(s)	63, 74
HapII	CCGG	9 cut(s)	71, 158, 176, 188, 266, 290, 317, 371, 417
Hin1II	CATG	1 cut(s)	534
HinfI	GANTC	3 cut(s)	4, 161, 184
HpaII	CCGG	9 cut(s)	71, 158, 176, 188, 266, 290, 317, 371, 417
HphI	GGTGA	2 cut(s)	43, 255
Hpy188I	TCNGA	4 cut(s)	243, 330, 391, 474
Hpy188III	TCNNGA	2 cut(s)	19, 290
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	5 cut(s)	105, 225, 270, 291, 312
HpyCH4III	ACNGT	2 cut(s)	25, 55
HpyCH4V	TGCA	2 cut(s)	39, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 412, 527
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	534
Kpn2I	TCCGGA	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	33, 84, 243, 469
Lsp1109I	GCAGC	2 cut(s)	133, 505
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	548
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	4 cut(s)	35, 86, 245, 471
MbiI	CCGCTC	3 cut(s)	257, 368, 477
MboI	GATC	4 cut(s)	33, 84, 243, 469
MboII	GAAGA	3 cut(s)	193, 355, 358
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	484
MlsI	TGGCCA	1 cut(s)	63
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	6 cut(s)	117, 163, 199, 222, 249, 262
Mox20I	TGGCCA	1 cut(s)	63
MroI	TCCGGA	1 cut(s)	289
MscI	TGGCCA	1 cut(s)	63
MseI	TTAA	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	63
MspA1I	CMGCKG	3 cut(s)	146, 308, 464
MspI	CCGG	9 cut(s)	71, 158, 176, 188, 266, 290, 317, 371, 417
MspR9I	CCNGG	4 cut(s)	378, 417, 429, 435
MvaI	CCWGG	3 cut(s)	378, 429, 435
MwoI	GCNNNNNNNGC	3 cut(s)	305, 412, 527
NciI	CCSGG	1 cut(s)	417
NdeII	GATC	4 cut(s)	33, 84, 243, 469
NlaIII	CATG	1 cut(s)	534
NlaIV	GGNNCC	4 cut(s)	174, 210, 321, 375
PaqCI	CACCTGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	161
PfoI	TCCNGGA	2 cut(s)	376, 433
PkrI	GCNGC	4 cut(s)	148, 463, 520, 523
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp6I	CCWGG	3 cut(s)	376, 427, 433
PspGI	CCWGG	3 cut(s)	376, 427, 433
PspN4I	GGNNCC	4 cut(s)	174, 210, 321, 375
PspPI	GGNCC	3 cut(s)	380, 431, 437
PsuI	RGATCY	1 cut(s)	243
PvuII	CAGCTG	2 cut(s)	146, 308
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	4 cut(s)	147, 462, 519, 522
Sau3AI	GATC	4 cut(s)	33, 84, 243, 469
Sau96I	GGNCC	3 cut(s)	380, 431, 437
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	4 cut(s)	378, 417, 429, 435
SduI	GDGCHC	1 cut(s)	484
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	3 cut(s)	380, 431, 437
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	1 cut(s)	548
StyD4I	CCNGG	4 cut(s)	376, 415, 427, 433
TaaI	ACNGT	2 cut(s)	25, 55
TauI	GCSGC	2 cut(s)	464, 524
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TseI	GCWGC	2 cut(s)	146, 518
TspDTI	ATGAA	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	182
VpaK11BI	GGWCC	3 cut(s)	380, 431, 437
XspI	CTAG	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.