Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Forward (+)

22973240 .. 22975137

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G225300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGCGAAACAACGTGTTCACAATCGCACTCATCTGCATTCTCGTCGCCGGAGTCGGAGGCCAAGCTCCGGCAGCCGCGCCGACAAAGTCTCCGGCGACCCCAGCTGCAACCACACCCACTACTTCACCATCAGCTGCAACCACACCCACCACTTCACCACCAGCTGCAGCTCCCACAAAGCCCAAGTCACCATCTCCAGTCGCTTCCCCAAAATCGGCTCCACCCGCTTCAACTCCGGTGTCGGCAACACCCAAGCCTGCGGCCGCGGCTCCAACTCCGGTGGCTACTCCTCCTACTGTTGCCGTTTCACCTCCATTGCCAGCTCCAGTGAGCTCACCACCTTCTAAGGCTCCGGCCAGCTCTCCACCGGCTAAATCTCCTCCGGCAGCCGCTCCGGCTCCAGTCGCTGAGCCACCGACTACACCTGAGGCTCCGACTCCAGCTCCTAGCAAGAAGAAGTCTAAGCACAAGTCTCCGGCGGCTGCTCCCACTCCAGCTTCGGACAGCCCACCCGCGCCTCCGGCTGAGGCTCCTGGAGCAGCGAGCCCCGGTGCTGAAACCCCTGCTCCTTCTGTAGCTGACGATCAGAGTGGAGCAGTGAGGTGCCTGCACAAGGTAGTCGGATACATTGCATTGGGATGGGCAGTTTTGGCATTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

21.09

Weight (kDa)

9.65

Isoelectric Point (pI)

89.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	606
AccBSI	CCGCTC	1 cut(s)	395
AccII	CGCG	3 cut(s)	80, 269, 518
AciI	CCGC	8 cut(s)	78, 228, 263, 267, 269, 393, 482, 516
AcoI	YGGCCR	2 cut(s)	264, 357
AfiI	CCNNNNNNNGG	3 cut(s)	70, 217, 616
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	234
AjnI	CCWGG	1 cut(s)	535
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	2 cut(s)	96, 480
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	3 cut(s)	61, 264, 357
ApeKI	GCWGC	8 cut(s)	74, 107, 137, 167, 170, 389, 485, 542
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	2 cut(s)	82, 520
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	5 cut(s)	120, 150, 183, 303, 330
AxyI	CCTNAGG	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	606
BanII	GRGCYC	2 cut(s)	338, 551
Bbv12I	GWGCWC	1 cut(s)	338
BbvCI	CCTCAGC	1 cut(s)	528
BbvI	GCAGC	8 cut(s)	86, 94, 124, 154, 182, 401, 472, 554
BccI	CCATC	3 cut(s)	139, 202, 636
BceAI	ACGGC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	1 cut(s)	537
BciVI	GTATCC	1 cut(s)	620
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	2 cut(s)	96, 480
BfaI	CTAG	2 cut(s)	450, 664
BfmI	CTRYAG	2 cut(s)	168, 576
BfuI	GTATCC	1 cut(s)	620
BglI	GCCNNNNNGGC	1 cut(s)	398
BlpI	GCTNAGC	1 cut(s)	411
Bme1390I	CCNGG	2 cut(s)	537, 552
BmiI	GGNNCC	7 cut(s)	222, 273, 354, 402, 435, 534, 608
BmrFI	CCNGG	2 cut(s)	537, 552
BpmI	CTGGAG	6 cut(s)	183, 312, 387, 426, 480, 558
Bpu10I	CCTNAGC	1 cut(s)	528
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	552
BsaJI	CCNNGG	2 cut(s)	267, 550
BsaWI	WCCGGW	2 cut(s)	238, 280
BsaXI	ACNNNNNCTCC	6 cut(s)	76, 106, 430, 460, 553, 583
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 217, 616
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	3 cut(s)	200, 329, 404
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	2 cut(s)	317, 630
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	267, 550
BseGI	GGATG	1 cut(s)	647
BseLI	CCNNNNNNNGG	3 cut(s)	70, 217, 616
BseMI	GCAATG	2 cut(s)	317, 630
BseMII	CTCAG	3 cut(s)	402, 420, 519
BseNI	ACTGG	3 cut(s)	200, 329, 404
BseRI	GAGGAG	2 cut(s)	282, 372
BseX3I	CGGCCG	1 cut(s)	264
BseXI	GCAGC	8 cut(s)	86, 94, 124, 154, 182, 401, 472, 554
BseYI	CCCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	596
Bsh1236I	CGCG	3 cut(s)	80, 269, 518
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	3 cut(s)	63, 266, 359
BshNI	GGYRCC	1 cut(s)	606
BsiEI	CGRYCG	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	70, 217, 616
BsmAI	GTCTC	2 cut(s)	96, 480
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	63, 266, 359
Bsp1286I	GDGCHC	2 cut(s)	338, 551
Bsp143I	GATC	1 cut(s)	586
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	8 cut(s)	78, 228, 263, 267, 269, 393, 482, 516
BspANI	GGCC	3 cut(s)	63, 266, 359
BspCNI	CTCAG	3 cut(s)	403, 421, 520
BspFNI	CGCG	3 cut(s)	80, 269, 518
BspLI	GGNNCC	7 cut(s)	222, 273, 354, 402, 435, 534, 608
BspMAI	CTGCAG	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	606
BsrBI	CCGCTC	1 cut(s)	395
BsrDI	GCAATG	2 cut(s)	317, 630
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	3 cut(s)	200, 329, 404
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	267, 550
BssMI	GATC	1 cut(s)	586
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	301
BstC8I	GCNNGC	5 cut(s)	261, 324, 361, 547, 611
BstDEI	CTNAG	5 cut(s)	348, 411, 429, 465, 528
BstDSI	CCRYGG	1 cut(s)	267
BstENI	CCTNNNNNAGG	1 cut(s)	614
BstF5I	GGATG	1 cut(s)	647
BstFNI	CGCG	3 cut(s)	80, 269, 518
BstHHI	GCGC	2 cut(s)	82, 520
BstKTI	GATC	1 cut(s)	589
BstMAI	GTCTC	2 cut(s)	96, 480
BstMBI	GATC	1 cut(s)	586
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	9 cut(s)	74, 104, 227, 269, 398, 407, 524, 539, 653
BstNI	CCWGG	1 cut(s)	537
BstSCI	CCNGG	2 cut(s)	535, 550
BstSFI	CTRYAG	2 cut(s)	168, 576
BstUI	CGCG	3 cut(s)	80, 269, 518
BstV1I	GCAGC	8 cut(s)	86, 94, 124, 154, 182, 401, 472, 554
BstZI	CGGCCG	1 cut(s)	264
Bsu36I	CCTNAGG	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	3 cut(s)	63, 266, 359
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	647
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	2 cut(s)	336, 606
Cac8I	GCNNGC	5 cut(s)	261, 324, 361, 547, 611
CaiI	CAGNNNCTG	1 cut(s)	410
CciNI	GCGGCCGC	1 cut(s)	264
CfoI	GCGC	2 cut(s)	82, 520
Cfr10I	RCCGGY	1 cut(s)	370
Cfr42I	CCGCGG	1 cut(s)	270
CspCI	CAANNNNNGTGG	2 cut(s)	264, 299
DdeI	CTNAG	5 cut(s)	348, 411, 429, 465, 528
DpnI	GATC	1 cut(s)	588
DpnII	GATC	1 cut(s)	586
EaeI	YGGCCR	2 cut(s)	264, 357
EagI	CGGCCG	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	336
EclXI	CGGCCG	1 cut(s)	264
Eco24I	GRGCYC	2 cut(s)	338, 551
Eco52I	CGGCCG	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	336
EcoNI	CCTNNNNNAGG	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	535
EcoT38I	GRGCYC	2 cut(s)	338, 551
FauI	CCCGC	2 cut(s)	235, 523
FokI	GGATG	1 cut(s)	654
FriOI	GRGCYC	2 cut(s)	338, 551
FspBI	CTAG	2 cut(s)	450, 664
GlaI	GCGC	2 cut(s)	81, 519
GsaI	CCCAGC	1 cut(s)	107
GsuI	CTGGAG	6 cut(s)	183, 312, 387, 426, 480, 558
HaeIII	GGCC	3 cut(s)	63, 266, 359
HhaI	GCGC	2 cut(s)	82, 520
Hin6I	GCGC	2 cut(s)	80, 518
HinP1I	GCGC	2 cut(s)	80, 518
HinfI	GANTC	2 cut(s)	54, 439
HphI	GGTGA	5 cut(s)	120, 150, 183, 303, 330
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	5 cut(s)	59, 438, 505, 591, 626
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	354, 582
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	6 cut(s)	39, 110, 140, 170, 613, 635
HpyF10VI	GCNNNNNNNGC	9 cut(s)	74, 104, 227, 269, 398, 407, 524, 539, 653
HpyF3I	CTNAG	5 cut(s)	348, 411, 429, 465, 528
HpySE526I	ACGT	1 cut(s)	15
HspAI	GCGC	2 cut(s)	80, 518
KspI	CCGCGG	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	586
Lsp1109I	GCAGC	8 cut(s)	86, 94, 124, 154, 182, 401, 472, 554
MaeI	CTAG	2 cut(s)	450, 664
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	1 cut(s)	588
MbiI	CCGCTC	1 cut(s)	395
MboI	GATC	1 cut(s)	586
MboII	GAAGA	1 cut(s)	469
MhlI	GDGCHC	2 cut(s)	338, 551
MlyI	GAGTC	2 cut(s)	63, 433
MmeI	TCCRAC	4 cut(s)	37, 299, 461, 604
MnlI	CCTC	8 cut(s)	53, 303, 324, 393, 424, 523, 531, 597
MslI	CAYNNNNRTG	1 cut(s)	640
MspA1I	CMGCKG	4 cut(s)	107, 137, 167, 269
MspR9I	CCNGG	2 cut(s)	537, 552
Mva1269I	GAATGC	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	537
MvnI	CGCG	3 cut(s)	80, 269, 518
MwoI	GCNNNNNNNGC	9 cut(s)	74, 104, 227, 269, 398, 407, 524, 539, 653
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	1 cut(s)	586
NlaIV	GGNNCC	7 cut(s)	222, 273, 354, 402, 435, 534, 608
NmuCI	GTSAC	1 cut(s)	189
NotI	GCGGCCGC	1 cut(s)	264
PctI	GAATGC	1 cut(s)	39
PflFI	GACNNNGTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	535
PleI	GAGTC	2 cut(s)	62, 433
PpsI	GAGTC	2 cut(s)	62, 433
Psp124BI	GAGCTC	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	535
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	7 cut(s)	222, 273, 354, 402, 435, 534, 608
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	410
PsyI	GACNNNGTC	1 cut(s)	88
PvuII	CAGCTG	3 cut(s)	107, 137, 167
RseI	CAYNNNNRTG	1 cut(s)	640
SacI	GAGCTC	1 cut(s)	338
SacII	CCGCGG	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	586
SchI	GAGTC	2 cut(s)	63, 433
ScrFI	CCNGG	2 cut(s)	537, 552
SduI	GDGCHC	2 cut(s)	338, 551
SfcI	CTRYAG	2 cut(s)	168, 576
Sfr303I	CCGCGG	1 cut(s)	270
SgrBI	CCGCGG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	640
SsiI	CCGC	8 cut(s)	78, 228, 263, 267, 269, 393, 482, 516
SspMI	CTAG	2 cut(s)	450, 664
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	2 cut(s)	535, 550
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	18
TauI	GCSGC	6 cut(s)	80, 266, 269, 272, 395, 485
TscAI	CASTG	2 cut(s)	336, 606
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	8 cut(s)	74, 107, 137, 167, 170, 389, 485, 542
Tsp45I	GTSAC	1 cut(s)	189
TspRI	CASTG	2 cut(s)	336, 606
Tth111I	GACNNNGTC	1 cut(s)	88
XagI	CCTNNNNNAGG	1 cut(s)	614
XspI	CTAG	2 cut(s)	450, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.