Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

18326294 .. 18329004

Gene Structure 2711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG199300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGATCGCAGCACCGCCTTAACGTTCGCGTTCATCTGCATTATCGTCGCCGGCGTCGGAGGTCAAGCTCCGGCTTCCGCACCCACTAAATCTACCGCCACTCCGGCTTCCGCACCCACTAAATCTCCTGCCACTCCCGCCCCCACCACATCACCATCCGCCGCTCCTTCAAAGCCCAAGTCCCCCGCTCCCGTCGCCACACCGGCCTCAGCTCCGACCGCCGCTCCACCTACCCCCGTCGCCGCTGCTCCAACTCCGGTGGCCACTCCTCCCGCGAAATCTCCGCCGACTGCTGCACCTACACCGGCCGTAACTCCGGTCAGCGCACCCCCCGCCACTCCTCCCGCCAAATCTCCACCGACCGCTGCTCCCACACCAACCGCCGTCCCTGTAGCACCGGTTTCTCCTCCCTCCATCGCACCTGCTGCTCCGGCTCCAACATCCGAGACTCCTTCAGCTTCTCCCGGTCCAGCGACTCTCAGTCCACCCGCACCGCCACCTGAGACCCCCGGAATGAGCCCTGAAGCCTCATCTCCCGGTCCTTCCGGCGCCGCAGCCGATGAGAGTGGAGCAGAGAAGGTGCATTACATGGTTGGATCGATTGCATTGGGATGGGGTGTGATCGTGGCATTGTGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

20.1

Weight (kDa)

7.88

Isoelectric Point (pI)

89.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	430
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	548
AccBSI	CCGCTC	3 cut(s)	164, 188, 224
AccII	CGCG	2 cut(s)	29, 275
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	2 cut(s)	12, 604
AcoI	YGGCCR	2 cut(s)	261, 306
AcuI	CTGAAG	2 cut(s)	438, 543
AcyI	GRCGYC	2 cut(s)	54, 549
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	1 cut(s)	171
AhdI	GACNNNNNGTC	1 cut(s)	480
AluBI	AGCT	3 cut(s)	68, 212, 458
AluI	AGCT	3 cut(s)	68, 212, 458
Alw26I	GTCTC	2 cut(s)	440, 497
AlwI	GGATC	2 cut(s)	12, 604
AoxI	GGCC	3 cut(s)	204, 261, 306
ApeKI	GCWGC	6 cut(s)	9, 245, 293, 365, 425, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AsiGI	ACCGGT	1 cut(s)	397
AspLEI	GCGC	2 cut(s)	326, 551
AspS9I	GGNCC	2 cut(s)	467, 539
AsuC2I	CCSGG	3 cut(s)	465, 510, 537
AsuHPI	GGTGA	1 cut(s)	144
AvaII	GGWCC	2 cut(s)	467, 539
BalI	TGGCCA	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	521
BarI	GAAGNNNNNNTAC	2 cut(s)	569, 601
BbvCI	CCTCAGC	1 cut(s)	208
BbvI	GCAGC	6 cut(s)	21, 232, 280, 352, 412, 566
BccI	CCATC	3 cut(s)	163, 422, 606
BceAI	ACGGC	2 cut(s)	293, 368
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BcnI	CCSGG	3 cut(s)	465, 510, 537
BcoDI	GTCTC	2 cut(s)	440, 497
BfaI	CTAG	1 cut(s)	640
BfmI	CTRYAG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	552
BfuAI	ACCTGC	1 cut(s)	430
BglI	GCCNNNNNGGC	2 cut(s)	104, 203
Bme1390I	CCNGG	3 cut(s)	465, 510, 537
Bme18I	GGWCC	2 cut(s)	467, 539
BmeRI	GACNNNNNGTC	1 cut(s)	480
BmgT120I	GGNCC	2 cut(s)	467, 539
BmiI	GGNNCC	2 cut(s)	435, 550
BmrFI	CCNGG	3 cut(s)	465, 510, 537
Bpu10I	CCTNAGC	1 cut(s)	208
BpuMI	CCSGG	3 cut(s)	465, 510, 537
Bsa29I	ATCGAT	1 cut(s)	599
BsaHI	GRCGYC	2 cut(s)	54, 549
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	508
BsaWI	WCCGGW	3 cut(s)	256, 316, 397
BsaXI	ACNNNNNCTCC	8 cut(s)	85, 109, 115, 139, 208, 238, 352, 382
Bse118I	RCCGGY	4 cut(s)	50, 202, 304, 397
BseCI	ATCGAT	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	3 cut(s)	155, 440, 617
BseMII	CTCAG	3 cut(s)	222, 492, 493
BseRI	GAGGAG	3 cut(s)	258, 330, 396
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	6 cut(s)	21, 232, 280, 352, 412, 566
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	2 cut(s)	29, 275
Bsh1285I	CGRYCG	3 cut(s)	219, 309, 363
BshFI	GGCC	3 cut(s)	206, 263, 308
BshNI	GGYRCC	1 cut(s)	548
BshTI	ACCGGT	1 cut(s)	397
BshVI	ATCGAT	1 cut(s)	599
BsiEI	CGRYCG	3 cut(s)	219, 309, 363
BslFI	GGGAC	2 cut(s)	166, 371
BsmAI	GTCTC	2 cut(s)	440, 497
BsmFI	GGGAC	2 cut(s)	166, 371
BsnI	GGCC	3 cut(s)	206, 263, 308
Bso31I	GGTCTC	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	3 cut(s)	4, 596, 621
BspANI	GGCC	3 cut(s)	206, 263, 308
BspCNI	CTCAG	3 cut(s)	221, 492, 493
BspDI	ATCGAT	1 cut(s)	599
BspFNI	CGCG	2 cut(s)	29, 275
BspLI	GGNNCC	2 cut(s)	435, 550
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	2 cut(s)	12, 604
BspT107I	GGYRCC	1 cut(s)	548
BspTNI	GGTCTC	1 cut(s)	497
BsrBI	CCGCTC	3 cut(s)	164, 188, 224
BsrFI	RCCGGY	4 cut(s)	50, 202, 304, 397
BssAI	RCCGGY	4 cut(s)	50, 202, 304, 397
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	3 cut(s)	4, 596, 621
BssNI	GRCGYC	2 cut(s)	54, 549
BstACI	GRCGYC	2 cut(s)	54, 549
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	3 cut(s)	208, 479, 501
BstF5I	GGATG	3 cut(s)	155, 440, 617
BstFNI	CGCG	2 cut(s)	29, 275
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	2 cut(s)	326, 551
BstKTI	GATC	3 cut(s)	7, 599, 624
BstMAI	GTCTC	2 cut(s)	440, 497
BstMBI	GATC	3 cut(s)	4, 596, 621
BstMCI	CGRYCG	3 cut(s)	219, 309, 363
BstMWI	GCNNNNNNNGC	8 cut(s)	104, 137, 194, 203, 218, 332, 425, 431
BstSCI	CCNGG	3 cut(s)	463, 508, 535
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	2 cut(s)	29, 275
BstV1I	GCAGC	6 cut(s)	21, 232, 280, 352, 412, 566
BstZI	CGGCCG	1 cut(s)	306
Bsu15I	ATCGAT	1 cut(s)	599
BsuRI	GGCC	3 cut(s)	206, 263, 308
BsuTUI	ATCGAT	1 cut(s)	599
BtgZI	GCGATG	1 cut(s)	400
BtsCI	GGATG	3 cut(s)	155, 440, 617
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	2 cut(s)	326, 551
Cfr10I	RCCGGY	4 cut(s)	50, 202, 304, 397
Cfr13I	GGNCC	2 cut(s)	467, 539
ClaI	ATCGAT	1 cut(s)	599
CseI	GACGC	1 cut(s)	43
CspAI	ACCGGT	1 cut(s)	397
CspCI	CAANNNNNGTGG	2 cut(s)	240, 275
CviAII	CATG	1 cut(s)	589
DdeI	CTNAG	3 cut(s)	208, 479, 501
DinI	GGCGCC	1 cut(s)	550
DpnI	GATC	3 cut(s)	6, 598, 623
DpnII	GATC	3 cut(s)	4, 596, 621
DriI	GACNNNNNGTC	1 cut(s)	480
EaeI	YGGCCR	2 cut(s)	261, 306
EagI	CGGCCG	1 cut(s)	306
Eam1105I	GACNNNNNGTC	1 cut(s)	480
EciI	GGCGGA	2 cut(s)	148, 273
EclXI	CGGCCG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	521
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	2 cut(s)	467, 539
Eco52I	CGGCCG	1 cut(s)	306
Eco57I	CTGAAG	2 cut(s)	438, 543
EcoT38I	GRGCYC	1 cut(s)	521
EgeI	GGCGCC	1 cut(s)	550
EheI	GGCGCC	1 cut(s)	550
FaeI	CATG	1 cut(s)	592
FaiI	YATR	1 cut(s)	590
FaqI	GGGAC	2 cut(s)	166, 371
FatI	CATG	1 cut(s)	588
FauI	CCCGC	6 cut(s)	145, 193, 280, 340, 352, 496
FokI	GGATG	3 cut(s)	142, 427, 624
FriOI	GRGCYC	1 cut(s)	521
FspBI	CTAG	1 cut(s)	640
GlaI	GCGC	2 cut(s)	325, 550
HaeII	RGCGCY	1 cut(s)	552
HaeIII	GGCC	3 cut(s)	206, 263, 308
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	2 cut(s)	326, 551
Hin1I	GRCGYC	2 cut(s)	54, 549
Hin1II	CATG	1 cut(s)	592
Hin6I	GCGC	2 cut(s)	324, 549
HinP1I	GCGC	2 cut(s)	324, 549
HinfI	GANTC	2 cut(s)	448, 475
HphI	GGTGA	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	3 cut(s)	59, 216, 445
Hpy8I	GTNNAC	1 cut(s)	485
Hpy99I	CGWCG	4 cut(s)	50, 59, 197, 242
HpyAV	CCTTC	4 cut(s)	177, 462, 552, 571
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	39, 296, 583, 605
HpyF10VI	GCNNNNNNNGC	8 cut(s)	104, 137, 194, 203, 218, 332, 425, 431
HpyF3I	CTNAG	3 cut(s)	208, 479, 501
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	2 cut(s)	54, 549
Hsp92II	CATG	1 cut(s)	592
HspAI	GCGC	2 cut(s)	324, 549
KasI	GGCGCC	1 cut(s)	548
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	4, 596, 621
Lsp1109I	GCAGC	6 cut(s)	21, 232, 280, 352, 412, 566
MaeI	CTAG	1 cut(s)	640
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	3 cut(s)	6, 598, 623
MbiI	CCGCTC	3 cut(s)	164, 188, 224
MboI	GATC	3 cut(s)	4, 596, 621
MhlI	GDGCHC	1 cut(s)	521
MlsI	TGGCCA	1 cut(s)	263
MluNI	TGGCCA	1 cut(s)	263
Mly113I	GGCGCC	1 cut(s)	549
MlyI	GAGTC	2 cut(s)	442, 469
MmeI	TCCRAC	5 cut(s)	37, 239, 275, 461, 574
MnlI	CCTC	7 cut(s)	53, 217, 279, 351, 417, 421, 538
Mox20I	TGGCCA	1 cut(s)	263
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	610
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	245, 365
MspR9I	CCNGG	3 cut(s)	465, 510, 537
MvnI	CGCG	2 cut(s)	29, 275
MwoI	GCNNNNNNNGC	8 cut(s)	104, 137, 194, 203, 218, 332, 425, 431
NaeI	GCCGGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	549
NciI	CCSGG	3 cut(s)	465, 510, 537
NdeII	GATC	3 cut(s)	4, 596, 621
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	592
NlaIV	GGNNCC	2 cut(s)	435, 550
PaqCI	CACCTGC	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	397
PleI	GAGTC	2 cut(s)	442, 469
PluTI	GGCGCC	1 cut(s)	552
PpsI	GAGTC	2 cut(s)	442, 469
Psp1406I	AACGTT	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	435, 550
PspPI	GGNCC	2 cut(s)	467, 539
RseI	CAYNNNNRTG	1 cut(s)	610
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	4, 596, 621
Sau96I	GGNCC	2 cut(s)	467, 539
SchI	GAGTC	2 cut(s)	442, 469
ScrFI	CCNGG	3 cut(s)	465, 510, 537
SduI	GDGCHC	1 cut(s)	521
SfcI	CTRYAG	1 cut(s)	390
SfoI	GGCGCC	1 cut(s)	550
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	2 cut(s)	467, 539
SmiMI	CAYNNNNRTG	1 cut(s)	610
SspDI	GGCGCC	1 cut(s)	548
SspMI	CTAG	1 cut(s)	640
StyD4I	CCNGG	3 cut(s)	463, 508, 535
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	599
TauI	GCSGC	4 cut(s)	164, 224, 245, 554
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseI	GCWGC	6 cut(s)	9, 245, 293, 365, 425, 554
TspDTI	ATGAA	1 cut(s)	22
VpaK11BI	GGWCC	2 cut(s)	467, 539
XspI	CTAG	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.