Rh6BG060500

Classical arabinogalactan protein 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003772
Physical Location & Seq
Forward (+)
9585211 .. 9587097
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG060500.1

Sequence Viewer

Length: 678 bp
ATGAGTCGCAATGCCTTGTTCTTCCTAGGCTTCCTTTGCATTGCGGTCGCCGGAGTCGGAGGCCAATCTCCCTCTACCTCACCCACCGCCACACCAGCTCCTCCAACCCCCACTACTCCACCACCGGTCACCTCATCCCCACCCCCGGCTGCCACCTCACCTCCCCCAGCTGCCGCCTCACCACCACCAGTGACCGCATCACCACCACCAGCCACTCCTCCTCCAGTCAGCGCACCCCCGCCGGCCACTCCACCTCCGGCCACCCCACCACCAGTCAGCGCTCCCCCTCCTGCCACTCCACCACCAGTCAGCGCGCCTCCTCCGGCGACTCCACCACCCGCCACTCCTCCCCCGGCAACTCCACCACCCGCCACCCCTCCCCCGGCAACCCCACCTCCGGCAACTCCTCCCCCGGCCACTCCACCACCAGCTCCTCTTGCATCGCCCCCAGCTCCATCTCCCAAGGTGAAATCTCCGGCTCTGGCTCCAACTCCTGCAGCTCTTTCGCCGGGCCCACCATCGCCGCCTGTTGGAGCTCCTGGTCCCAGCAGCATCGAGGCAGCCTCTCCGGGCCCTTCTCAGTCGTCTGATCAGAGTGGAGTAGAGAAGATGTGGACAATGCAGAAGATGGTTGGGAGCTTGTTGTTCGGATGGGCTCTTCTCAGCTTGATGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

21.53

Weight (kDa)

9.1

Isoelectric Point (pI)

115.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 314
AciI CCGC 8 cut(s) 44, 87, 174, 195, 239, 339, 369, 524
AcoI YGGCCR 3 cut(s) 243, 258, 414
AfeI AGCGCT 1 cut(s) 280
AfiI CCNNNNNNNGG 4 cut(s) 145, 382, 397, 530
AgeI ACCGGT 1 cut(s) 124
AjnI CCWGG 1 cut(s) 538
AluBI AGCT 8 cut(s) 98, 170, 431, 452, 500, 536, 639, 666
AluI AGCT 8 cut(s) 98, 170, 431, 452, 500, 536, 639, 666
Alw21I GWGCWC 1 cut(s) 538
Aor51HI AGCGCT 1 cut(s) 280
AoxI GGCC 6 cut(s) 61, 243, 258, 414, 511, 571
ApaI GGGCCC 2 cut(s) 515, 575
ApeKI GCWGC 5 cut(s) 149, 170, 497, 549, 560
AsiGI ACCGGT 1 cut(s) 124
AspA2I CCTAGG 1 cut(s) 25
AspLEI GCGC 4 cut(s) 233, 281, 314, 316
AspS9I GGNCC 5 cut(s) 511, 512, 542, 571, 572
AsuC2I CCSGG 6 cut(s) 146, 353, 383, 413, 510, 570
AsuHPI GGTGA 6 cut(s) 72, 121, 150, 171, 192, 478
AvaII GGWCC 1 cut(s) 542
AvrII CCTAGG 1 cut(s) 25
BaeGI GKGCMC 2 cut(s) 515, 575
BanII GRGCYC 4 cut(s) 515, 538, 575, 658
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 5 cut(s) 136, 157, 509, 561, 572
BccI CCATC 4 cut(s) 463, 526, 622, 645
BcgI CGANNNNNNTGC 4 cut(s) 28, 62, 486, 520
BciT130I CCWGG 1 cut(s) 540
BclI TGATCA 1 cut(s) 589
BcnI CCSGG 6 cut(s) 146, 353, 383, 413, 510, 570
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 282
BisI GCNGC 7 cut(s) 150, 171, 174, 498, 524, 550, 561
BlnI CCTAGG 1 cut(s) 25
BlsI GCNGC 7 cut(s) 151, 172, 175, 499, 525, 551, 562
Bme1390I CCNGG 7 cut(s) 146, 353, 383, 413, 510, 540, 570
Bme18I GGWCC 1 cut(s) 542
BmgT120I GGNCC 5 cut(s) 511, 512, 542, 571, 572
BmiI GGNNCC 4 cut(s) 486, 513, 544, 573
BmrFI CCNGG 7 cut(s) 146, 353, 383, 413, 510, 540, 570
BmsI GCATC 4 cut(s) 206, 449, 561, 660
BplI GAGNNNNNCTC 2 cut(s) 548, 580
BpmI CTGGAG 1 cut(s) 207
BpuMI CCSGG 6 cut(s) 146, 353, 383, 413, 510, 570
BsaJI CCNNGG 6 cut(s) 25, 144, 351, 381, 411, 462
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 4 cut(s) 145, 382, 397, 530
Bse118I RCCGGY 2 cut(s) 124, 241
Bse1I ACTGG 4 cut(s) 188, 224, 272, 305
Bse3DI GCAATG 2 cut(s) 16, 39
BseBI CCWGG 1 cut(s) 540
BseDI CCNNGG 6 cut(s) 25, 144, 351, 381, 411, 462
BseGI GGATG 2 cut(s) 134, 656
BseLI CCNNNNNNNGG 4 cut(s) 145, 382, 397, 530
BseMI GCAATG 2 cut(s) 16, 39
BseMII CTCAG 2 cut(s) 593, 676
BseNI ACTGG 4 cut(s) 188, 224, 272, 305
BsePI GCGCGC 1 cut(s) 312
BseRI GAGGAG 7 cut(s) 90, 207, 210, 309, 336, 396, 423
BseSI GKGCMC 2 cut(s) 515, 575
BseXI GCAGC 5 cut(s) 136, 157, 509, 561, 572
BseYI CCCAGC 3 cut(s) 166, 448, 545
Bsh1236I CGCG 1 cut(s) 314
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 6 cut(s) 63, 245, 260, 416, 513, 573
BshTI ACCGGT 1 cut(s) 124
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 538
BslFI GGGAC 1 cut(s) 528
BslI CCNNNNNNNGG 4 cut(s) 145, 382, 397, 530
BsmFI GGGAC 1 cut(s) 528
BsnI GGCC 6 cut(s) 63, 245, 260, 416, 513, 573
Bsp120I GGGCCC 2 cut(s) 511, 571
Bsp1286I GDGCHC 4 cut(s) 515, 538, 575, 658
Bsp143I GATC 1 cut(s) 589
BspACI CCGC 8 cut(s) 44, 87, 174, 195, 239, 339, 369, 524
BspANI GGCC 6 cut(s) 63, 245, 260, 416, 513, 573
BspCNI CTCAG 2 cut(s) 592, 675
BspFNI CGCG 1 cut(s) 314
BspLI GGNNCC 4 cut(s) 486, 513, 544, 573
BspMAI CTGCAG 1 cut(s) 499
BspQI GCTCTTC 1 cut(s) 663
BsrDI GCAATG 2 cut(s) 16, 39
BsrFI RCCGGY 2 cut(s) 124, 241
BsrI ACTGG 4 cut(s) 188, 224, 272, 305
BssAI RCCGGY 2 cut(s) 124, 241
BssECI CCNNGG 6 cut(s) 25, 144, 351, 381, 411, 462
BssHII GCGCGC 1 cut(s) 312
BssMI GATC 1 cut(s) 589
BssT1I CCWWGG 2 cut(s) 25, 462
Bst2UI CCWGG 1 cut(s) 540
Bst6I CTCTTC 1 cut(s) 663
BstC8I GCNNGC 2 cut(s) 243, 314
BstDEI CTNAG 2 cut(s) 579, 662
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 2 cut(s) 134, 656
BstFNI CGCG 1 cut(s) 314
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 4 cut(s) 233, 281, 314, 316
BstKTI GATC 1 cut(s) 592
BstMBI GATC 1 cut(s) 589
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 36, 95, 437
BstNI CCWGG 1 cut(s) 540
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 7 cut(s) 144, 351, 381, 411, 508, 538, 568
BstSFI CTRYAG 1 cut(s) 495
BstSLI GKGCMC 2 cut(s) 515, 575
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 5 cut(s) 136, 157, 509, 561, 572
BsuRI GGCC 6 cut(s) 63, 245, 260, 416, 513, 573
BtgZI GCGATG 2 cut(s) 426, 504
BtsCI GGATG 2 cut(s) 134, 656
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 243, 314
CfoI GCGC 4 cut(s) 233, 281, 314, 316
Cfr10I RCCGGY 2 cut(s) 124, 241
Cfr13I GGNCC 5 cut(s) 511, 512, 542, 571, 572
CspAI ACCGGT 1 cut(s) 124
DdeI CTNAG 2 cut(s) 579, 662
DpnI GATC 1 cut(s) 591
DpnII GATC 1 cut(s) 589
EaeI YGGCCR 3 cut(s) 243, 258, 414
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Ecl136II GAGCTC 1 cut(s) 536
Eco130I CCWWGG 2 cut(s) 25, 462
Eco24I GRGCYC 4 cut(s) 515, 538, 575, 658
Eco47I GGWCC 1 cut(s) 542
Eco47III AGCGCT 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 536
Eco91I GGTNACC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 572
EcoO65I GGTNACC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 538
EcoT14I CCWWGG 2 cut(s) 25, 462
EcoT38I GRGCYC 4 cut(s) 515, 538, 575, 658
ErhI CCWWGG 2 cut(s) 25, 462
FaqI GGGAC 1 cut(s) 528
FauI CCCGC 3 cut(s) 246, 346, 376
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 7 cut(s) 150, 171, 174, 498, 524, 550, 561
FokI GGATG 2 cut(s) 121, 663
FriOI GRGCYC 4 cut(s) 515, 538, 575, 658
Fsp4HI GCNGC 7 cut(s) 150, 171, 174, 498, 524, 550, 561
FspBI CTAG 1 cut(s) 26
GlaI GCGC 4 cut(s) 232, 280, 313, 315
GluI GCNGC 7 cut(s) 150, 171, 174, 498, 524, 550, 561
GsaI CCCAGC 3 cut(s) 170, 452, 549
GsuI CTGGAG 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 6 cut(s) 63, 245, 260, 416, 513, 573
HhaI GCGC 4 cut(s) 233, 281, 314, 316
Hin6I GCGC 4 cut(s) 231, 279, 312, 314
HinP1I GCGC 4 cut(s) 231, 279, 312, 314
HinfI GANTC 3 cut(s) 4, 54, 328
HphI GGTGA 6 cut(s) 72, 121, 150, 171, 192, 478
Hpy166II GTNNAC 1 cut(s) 615
Hpy188I TCNGA 4 cut(s) 59, 589, 594, 650
Hpy8I GTNNAC 1 cut(s) 615
HpyAV CCTTC 1 cut(s) 585
HpyCH4V TGCA 4 cut(s) 39, 440, 497, 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 95, 437
HpyF3I CTNAG 2 cut(s) 579, 662
HspAI GCGC 4 cut(s) 231, 279, 312, 314
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 1 cut(s) 589
LguI GCTCTTC 1 cut(s) 663
LmnI GCTCC 8 cut(s) 103, 286, 436, 457, 490, 533, 541, 636
Lsp1109I GCAGC 5 cut(s) 136, 157, 509, 561, 572
LweI GCATC 4 cut(s) 206, 449, 561, 660
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 127, 190
MalI GATC 1 cut(s) 591
MboI GATC 1 cut(s) 589
MboII GAAGA 4 cut(s) 13, 619, 637, 650
MhlI GDGCHC 4 cut(s) 515, 538, 575, 658
MlyI GAGTC 3 cut(s) 13, 63, 322
MmeI TCCRAC 4 cut(s) 37, 128, 511, 512
MroNI GCCGGC 1 cut(s) 241
MspA1I CMGCKG 1 cut(s) 170
MspR9I CCNGG 7 cut(s) 146, 353, 383, 413, 510, 540, 570
MvaI CCWGG 1 cut(s) 540
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 3 cut(s) 36, 95, 437
NaeI GCCGGC 1 cut(s) 243
NciI CCSGG 6 cut(s) 146, 353, 383, 413, 510, 570
NdeII GATC 1 cut(s) 589
NgoMIV GCCGGC 1 cut(s) 241
NlaIV GGNNCC 4 cut(s) 486, 513, 544, 573
NmuCI GTSAC 2 cut(s) 127, 190
PauI GCGCGC 1 cut(s) 312
PciSI GCTCTTC 1 cut(s) 663
PdiI GCCGGC 1 cut(s) 243
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 7 cut(s) 151, 172, 175, 499, 525, 551, 562
PleI GAGTC 3 cut(s) 12, 62, 322
PpsI GAGTC 3 cut(s) 12, 62, 322
Psp124BI GAGCTC 1 cut(s) 538
Psp6I CCWGG 1 cut(s) 538
PspEI GGTNACC 1 cut(s) 127
PspFI CCCAGC 3 cut(s) 166, 448, 545
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 4 cut(s) 486, 513, 544, 573
PspOMI GGGCCC 2 cut(s) 511, 571
PspPI GGNCC 5 cut(s) 511, 512, 542, 571, 572
PstI CTGCAG 1 cut(s) 499
PteI GCGCGC 1 cut(s) 312
PvuII CAGCTG 1 cut(s) 170
SacI GAGCTC 1 cut(s) 538
SapI GCTCTTC 1 cut(s) 663
SatI GCNGC 7 cut(s) 150, 171, 174, 498, 524, 550, 561
Sau3AI GATC 1 cut(s) 589
Sau96I GGNCC 5 cut(s) 511, 512, 542, 571, 572
SchI GAGTC 3 cut(s) 13, 63, 322
ScrFI CCNGG 7 cut(s) 146, 353, 383, 413, 510, 540, 570
SduI GDGCHC 4 cut(s) 515, 538, 575, 658
SfaNI GCATC 4 cut(s) 206, 449, 561, 660
SfcI CTRYAG 1 cut(s) 495
SinI GGWCC 1 cut(s) 542
SsiI CCGC 8 cut(s) 44, 87, 174, 195, 239, 339, 369, 524
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 538
StyD4I CCNGG 7 cut(s) 144, 351, 381, 411, 508, 538, 568
StyI CCWWGG 2 cut(s) 25, 462
TaqI TCGA 1 cut(s) 555
TauI GCSGC 2 cut(s) 176, 526
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 2 cut(s) 127, 190
TseI GCWGC 5 cut(s) 149, 170, 497, 549, 560
Tsp45I GTSAC 2 cut(s) 127, 190
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 542
XmaJI CCTAGG 1 cut(s) 25
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.