Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

15809392 .. 15811274

Gene Structure 1883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G139000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGATCGCAAAGTTTTGTTATTCGCGGGCTTTATCTGCATTGTCTTCGCCGGCGTCGGAGGCCAATCTCCTGCCACGTCACCCACCACCAGCACCCCTGCTCCACCGGCAACCCCCACAACTCCACCACCCAACAACAACCCACCACCTTCTCCACCAACCACCCCTCCTCCCACCTCTGCACCACCCCCCGTCACCGCGGCACCACCCCCAGTTTCCACTCCTCCTCCCGTATCATCTCCCCCGCCCGCCACCCCACCTCCTGCAACTCCCCCACCAGCCTCCCCACCACCGGCATCTCCTCCTCCAGCATCTCCTCCTCCGGCTTCTCCACCACCGGCCACACCACCACCCGCAACTCCACCTCCTGCCGTTCCACCACCGGCGCCGCTTGCAGCTCCGGTTCCAGCTCCTGCTCCCGCCGTGAAGTCTCCGTCTTTGGCTCCGTCTCCGCTCGCACTGGCTCCGGGCCCACCCTCGCCGCCAGTAGGAGCCCCTGCGCCGAGCCTCGAGTCCGGCGCTCCTGGACCGTCTCAGGATCAGAGTGGAGCAGAGAAGATGTGGTCTATGCAGAAGATGGTTGGAAGCTTGCTCTTTGGATGGGCTCTTCTCAGCTTGATGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

20.08

Weight (kDa)

7.92

Isoelectric Point (pI)

112.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	202, 385
AccBSI	CCGCTC	1 cut(s)	454
AccII	CGCG	2 cut(s)	26, 200
AclWI	GGATC	2 cut(s)	12, 546
AcoI	YGGCCR	1 cut(s)	339
AcyI	GRCGYC	2 cut(s)	54, 386
AfiI	CCNNNNNNNGG	2 cut(s)	292, 488
AjiI	CACGTC	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	4 cut(s)	398, 410, 588, 615
AluI	AGCT	4 cut(s)	398, 410, 588, 615
Alw26I	GTCTC	3 cut(s)	435, 453, 537
AlwI	GGATC	2 cut(s)	12, 546
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	509
AoxI	GGCC	3 cut(s)	61, 339, 469
ApaI	GGGCCC	1 cut(s)	473
ApeKI	GCWGC	1 cut(s)	395
AspLEI	GCGC	3 cut(s)	388, 502, 521
AspS9I	GGNCC	3 cut(s)	469, 470, 527
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	2 cut(s)	72, 187
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	473
BanI	GGYRCC	2 cut(s)	202, 385
BanII	GRGCYC	3 cut(s)	473, 496, 607
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	2 cut(s)	571, 594
BceAI	ACGGC	2 cut(s)	356, 407
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	3 cut(s)	435, 453, 537
BfoI	RGCGCY	2 cut(s)	389, 522
BisI	GCNGC	4 cut(s)	201, 389, 396, 482
BlsI	GCNGC	4 cut(s)	202, 390, 397, 483
Bme1390I	CCNGG	2 cut(s)	468, 525
Bme18I	GGWCC	1 cut(s)	527
BmeT110I	CYCGRG	1 cut(s)	509
BmgBI	CACGTC	1 cut(s)	78
BmgT120I	GGNCC	3 cut(s)	469, 470, 527
BmiI	GGNNCC	7 cut(s)	204, 387, 405, 444, 465, 471, 493
BmrFI	CCNGG	2 cut(s)	468, 525
BmrI	ACTGGG	1 cut(s)	206
BmsI	GCATC	3 cut(s)	305, 320, 609
BmuI	ACTGGG	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	468
BsaHI	GRCGYC	2 cut(s)	54, 386
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 488
Bse118I	RCCGGY	5 cut(s)	50, 106, 292, 337, 382
Bse1I	ACTGG	3 cut(s)	212, 465, 485
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	605
BseLI	CCNNNNNNNGG	2 cut(s)	292, 488
BseMII	CTCAG	2 cut(s)	548, 625
BseNI	ACTGG	3 cut(s)	212, 465, 485
BseRI	GAGGAG	7 cut(s)	159, 213, 216, 291, 294, 306, 309
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	2 cut(s)	26, 200
BshFI	GGCC	3 cut(s)	63, 341, 471
BshNI	GGYRCC	2 cut(s)	202, 385
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	9 cut(s)	51, 107, 293, 323, 338, 383, 401, 467, 516
BslI	CCNNNNNNNGG	2 cut(s)	292, 488
BsmAI	GTCTC	3 cut(s)	435, 453, 537
BsmBI	CGTCTC	2 cut(s)	453, 537
BsnI	GGCC	3 cut(s)	63, 341, 471
BsoBI	CYCGRG	1 cut(s)	509
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	3 cut(s)	473, 496, 607
Bsp143I	GATC	2 cut(s)	4, 538
BspANI	GGCC	3 cut(s)	63, 341, 471
BspCNI	CTCAG	2 cut(s)	547, 624
BspFNI	CGCG	2 cut(s)	26, 200
BspLI	GGNNCC	7 cut(s)	204, 387, 405, 444, 465, 471, 493
BspPI	GGATC	2 cut(s)	12, 546
BspQI	GCTCTTC	1 cut(s)	612
BspT107I	GGYRCC	2 cut(s)	202, 385
BsrBI	CCGCTC	1 cut(s)	454
BsrFI	RCCGGY	5 cut(s)	50, 106, 292, 337, 382
BsrI	ACTGG	3 cut(s)	212, 465, 485
BssAI	RCCGGY	5 cut(s)	50, 106, 292, 337, 382
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	4, 538
BssNI	GRCGYC	2 cut(s)	54, 386
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	1 cut(s)	531
Bst6I	CTCTTC	1 cut(s)	612
BstACI	GRCGYC	2 cut(s)	54, 386
BstC8I	GCNNGC	6 cut(s)	28, 52, 249, 393, 456, 590
BstDEI	CTNAG	2 cut(s)	534, 611
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	605
BstFNI	CGCG	2 cut(s)	26, 200
BstH2I	RGCGCY	2 cut(s)	389, 522
BstHHI	GCGC	3 cut(s)	388, 502, 521
BstKTI	GATC	2 cut(s)	7, 541
BstMAI	GTCTC	3 cut(s)	435, 453, 537
BstMBI	GATC	2 cut(s)	4, 538
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 60, 107, 392
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	2 cut(s)	466, 523
BstSLI	GKGCMC	1 cut(s)	473
BstUI	CGCG	2 cut(s)	26, 200
BstV1I	GCAGC	1 cut(s)	407
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	63, 341, 471
BtgI	CCRYGG	1 cut(s)	198
BtrI	CACGTC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	605
BtsIMutI	CAGTG	1 cut(s)	458
Cac8I	GCNNGC	6 cut(s)	28, 52, 249, 393, 456, 590
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	3 cut(s)	388, 502, 521
Cfr10I	RCCGGY	5 cut(s)	50, 106, 292, 337, 382
Cfr13I	GGNCC	3 cut(s)	469, 470, 527
Cfr42I	CCGCGG	1 cut(s)	201
CseI	GACGC	1 cut(s)	43
DdeI	CTNAG	2 cut(s)	534, 611
DinI	GGCGCC	1 cut(s)	387
DpnI	GATC	2 cut(s)	6, 540
DpnII	GATC	2 cut(s)	4, 538
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
Eco24I	GRGCYC	3 cut(s)	473, 496, 607
Eco47I	GGWCC	1 cut(s)	527
Eco88I	CYCGRG	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	523
EcoT38I	GRGCYC	3 cut(s)	473, 496, 607
EgeI	GGCGCC	1 cut(s)	387
EheI	GGCGCC	1 cut(s)	387
Esp3I	CGTCTC	2 cut(s)	453, 537
FaiI	YATR	1 cut(s)	569
FauI	CCCGC	5 cut(s)	19, 252, 256, 361, 427
Fnu4HI	GCNGC	4 cut(s)	201, 389, 396, 482
FokI	GGATG	1 cut(s)	612
FriOI	GRGCYC	3 cut(s)	473, 496, 607
Fsp4HI	GCNGC	4 cut(s)	201, 389, 396, 482
GlaI	GCGC	3 cut(s)	387, 501, 520
GluI	GCNGC	4 cut(s)	201, 389, 396, 482
GsuI	CTGGAG	1 cut(s)	291
HaeII	RGCGCY	2 cut(s)	389, 522
HaeIII	GGCC	3 cut(s)	63, 341, 471
HapII	CCGG	9 cut(s)	51, 107, 293, 323, 338, 383, 401, 467, 516
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	3 cut(s)	388, 502, 521
Hin1I	GRCGYC	2 cut(s)	54, 386
Hin6I	GCGC	3 cut(s)	386, 500, 519
HinP1I	GCGC	3 cut(s)	386, 500, 519
HindIII	AAGCTT	1 cut(s)	586
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	9 cut(s)	51, 107, 293, 323, 338, 383, 401, 467, 516
HphI	GGTGA	2 cut(s)	72, 187
Hpy188I	TCNGA	2 cut(s)	59, 543
Hpy188III	TCNNGA	1 cut(s)	536
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	5 cut(s)	39, 182, 266, 395, 571
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 60, 107, 392
HpyF3I	CTNAG	2 cut(s)	534, 611
HpySE526I	ACGT	1 cut(s)	77
Hsp92I	GRCGYC	2 cut(s)	54, 386
HspAI	GCGC	3 cut(s)	386, 500, 519
KasI	GGCGCC	1 cut(s)	385
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	4, 538
LguI	GCTCTTC	1 cut(s)	612
LmnI	GCTCC	9 cut(s)	106, 403, 415, 421, 448, 469, 491, 526, 548
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	3 cut(s)	305, 320, 609
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	78, 193
MalI	GATC	2 cut(s)	6, 540
MbiI	CCGCTC	1 cut(s)	454
MboI	GATC	2 cut(s)	4, 538
MboII	GAAGA	4 cut(s)	37, 568, 586, 599
MhlI	GDGCHC	3 cut(s)	473, 496, 607
Mly113I	GGCGCC	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	2 cut(s)	37, 562
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	9 cut(s)	51, 107, 293, 323, 338, 383, 401, 467, 516
MspR9I	CCNGG	2 cut(s)	468, 525
MvaI	CCWGG	1 cut(s)	525
MvnI	CGCG	2 cut(s)	26, 200
MwoI	GCNNNNNNNGC	4 cut(s)	36, 60, 107, 392
NaeI	GCCGGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	2 cut(s)	4, 538
NgoMIV	GCCGGC	1 cut(s)	50
NlaIV	GGNNCC	7 cut(s)	204, 387, 405, 444, 465, 471, 493
NmeAIII	GCCGAG	1 cut(s)	528
NmuCI	GTSAC	2 cut(s)	78, 193
PaeR7I	CTCGAG	1 cut(s)	509
PciSI	GCTCTTC	1 cut(s)	612
PdiI	GCCGGC	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	523
PkrI	GCNGC	4 cut(s)	202, 390, 397, 483
PleI	GAGTC	1 cut(s)	520
PluTI	GGCGCC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	7 cut(s)	204, 387, 405, 444, 465, 471, 493
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	3 cut(s)	469, 470, 527
PspXI	VCTCGAGB	1 cut(s)	509
PstNI	CAGNNNCTG	1 cut(s)	413
SacII	CCGCGG	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	612
SatI	GCNGC	4 cut(s)	201, 389, 396, 482
Sau3AI	GATC	2 cut(s)	4, 538
Sau96I	GGNCC	3 cut(s)	469, 470, 527
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	2 cut(s)	468, 525
SduI	GDGCHC	3 cut(s)	473, 496, 607
SetI	ASST	9 cut(s)	80, 151, 179, 262, 367, 400, 412, 590, 617
SfaNI	GCATC	3 cut(s)	305, 320, 609
SfoI	GGCGCC	1 cut(s)	387
Sfr274I	CTCGAG	1 cut(s)	509
Sfr303I	CCGCGG	1 cut(s)	201
SgrAI	CRCCGGYG	2 cut(s)	50, 382
SgrBI	CCGCGG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	527
SlaI	CTCGAG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
SspDI	GGCGCC	1 cut(s)	385
StyD4I	CCNGG	2 cut(s)	466, 523
TaaI	ACNGT	1 cut(s)	531
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	510
TauI	GCSGC	3 cut(s)	203, 391, 484
TscAI	CASTG	1 cut(s)	465
TseFI	GTSAC	2 cut(s)	78, 193
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	2 cut(s)	78, 193
TspGWI	ACGGA	2 cut(s)	423, 435
TspRI	CASTG	1 cut(s)	465
VpaK11BI	GGWCC	1 cut(s)	527
XhoI	CTCGAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.