RLG00000014932

Classical arabinogalactan protein 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003772
Physical Location & Seq
Reverse (-)
59616990 .. 59619008
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014932

Sequence Viewer

Length: 687 bp
ATGAGTCGCAATGCCTTGTTGTTCCTAGGCTTCCTTTGCATTGCGGTCGCCGGAGTCGGAGGCCAATCTCCCGCTAACTCACCCACCGCCACACCAGCTCCTCCAACCCCCACTACTCCACCACCGGTCACCTCATCCCCACCCCCAGCTGCCACCTCACCTCCCCCAGCTGCCGCCTCACCACCACCAGTGACCGCATCACCACCACCAGCCACTCCTCCTCCAGTCAGCGCACCCCCGCCGGCCACTCCACCTCCGGCCACCCCACCACCAGTCAGCGCTCCCCCTCCGGCCACTCCACCACCCGCAACTCCTCCCCCGGCTACTCCACCACCCGCCACTCCTCCCCCGGCAACTCCACCACCGGCCACCCCTCCCCCAGCAACCCCACCTCCGGCAACTCCTCCCCCGGCCACTCCACCACCAGCTCCTCTTGCATCGCCCCCAGCTCTTGTCCCAGCTCCATCTCCCAAGGTGAAATCTCCGGCTTTGGCTCCAACTCCTGCAGCTCTTTCGCCGGGCCCACCAGCGCCTCCTGTTGGAGCTCCTGGTCCCAGCAGCATCGAGGCAGCCTCTCCGGGCCCGTCTCAGTCGTCTGATCAGAGTGGAGTAGAGAAGATGTGGACAATGCAGAAGATGGTTGGGAGCTTGTTGTTCGGATGGGCTCTTCTCAGCTTGATGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

21.77

Weight (kDa)

9.1

Isoelectric Point (pI)

113.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 44, 72, 87, 174, 195, 239, 306, 336
AcoI YGGCCR 5 cut(s) 243, 258, 291, 366, 411
AfeI AGCGCT 1 cut(s) 280
AfiI CCNNNNNNNGG 2 cut(s) 394, 539
AgeI ACCGGT 1 cut(s) 124
AjnI CCWGG 1 cut(s) 547
Alw21I GWGCWC 1 cut(s) 547
Alw26I GTCTC 1 cut(s) 591
Aor51HI AGCGCT 1 cut(s) 280
AoxI GGCC 8 cut(s) 61, 243, 258, 291, 366, 411, 520, 580
ApaI GGGCCC 2 cut(s) 524, 584
ApeKI GCWGC 5 cut(s) 149, 170, 506, 558, 569
AsiGI ACCGGT 1 cut(s) 124
AspA2I CCTAGG 1 cut(s) 25
AspLEI GCGC 3 cut(s) 233, 281, 532
AspS9I GGNCC 5 cut(s) 520, 521, 551, 580, 581
AsuC2I CCSGG 5 cut(s) 320, 350, 410, 519, 579
AsuHPI GGTGA 6 cut(s) 72, 121, 150, 171, 192, 487
AvaII GGWCC 1 cut(s) 551
AvrII CCTAGG 1 cut(s) 25
BaeGI GKGCMC 2 cut(s) 524, 584
BanII GRGCYC 4 cut(s) 524, 547, 584, 667
Bbv12I GWGCWC 1 cut(s) 547
BbvI GCAGC 5 cut(s) 136, 157, 518, 570, 581
BccI CCATC 3 cut(s) 472, 631, 654
BcgI CGANNNNNNTGC 4 cut(s) 28, 62, 495, 529
BciT130I CCWGG 1 cut(s) 549
BclI TGATCA 1 cut(s) 598
BcnI CCSGG 5 cut(s) 320, 350, 410, 519, 579
BcoDI GTCTC 1 cut(s) 591
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 504
BfoI RGCGCY 2 cut(s) 282, 533
BisI GCNGC 6 cut(s) 150, 171, 174, 507, 559, 570
BlnI CCTAGG 1 cut(s) 25
BlsI GCNGC 6 cut(s) 151, 172, 175, 508, 560, 571
Bme1390I CCNGG 6 cut(s) 320, 350, 410, 519, 549, 579
Bme18I GGWCC 1 cut(s) 551
BmgT120I GGNCC 5 cut(s) 520, 521, 551, 580, 581
BmiI GGNNCC 4 cut(s) 495, 522, 553, 582
BmrFI CCNGG 6 cut(s) 320, 350, 410, 519, 549, 579
BmsI GCATC 4 cut(s) 206, 446, 570, 669
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BpmI CTGGAG 1 cut(s) 207
BpuMI CCSGG 5 cut(s) 320, 350, 410, 519, 579
BsaJI CCNNGG 5 cut(s) 25, 318, 348, 408, 471
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 539
Bse118I RCCGGY 3 cut(s) 124, 241, 364
Bse1I ACTGG 3 cut(s) 188, 224, 272
Bse3DI GCAATG 2 cut(s) 16, 39
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 5 cut(s) 25, 318, 348, 408, 471
BseGI GGATG 2 cut(s) 134, 665
BseLI CCNNNNNNNGG 2 cut(s) 394, 539
BseMI GCAATG 2 cut(s) 16, 39
BseMII CTCAG 2 cut(s) 602, 685
BseNI ACTGG 3 cut(s) 188, 224, 272
BseRI GAGGAG 7 cut(s) 90, 207, 210, 303, 333, 393, 420
BseSI GKGCMC 2 cut(s) 524, 584
BseXI GCAGC 5 cut(s) 136, 157, 518, 570, 581
BseYI CCCAGC 6 cut(s) 145, 166, 379, 445, 457, 554
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 8 cut(s) 63, 245, 260, 293, 368, 413, 522, 582
BshTI ACCGGT 1 cut(s) 124
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 547
BslFI GGGAC 2 cut(s) 440, 537
BslI CCNNNNNNNGG 2 cut(s) 394, 539
BsmAI GTCTC 1 cut(s) 591
BsmBI CGTCTC 1 cut(s) 591
BsmFI GGGAC 2 cut(s) 440, 537
BsnI GGCC 8 cut(s) 63, 245, 260, 293, 368, 413, 522, 582
Bsp120I GGGCCC 2 cut(s) 520, 580
Bsp1286I GDGCHC 4 cut(s) 524, 547, 584, 667
Bsp143I GATC 1 cut(s) 598
BspACI CCGC 8 cut(s) 44, 72, 87, 174, 195, 239, 306, 336
BspANI GGCC 8 cut(s) 63, 245, 260, 293, 368, 413, 522, 582
BspCNI CTCAG 2 cut(s) 601, 684
BspLI GGNNCC 4 cut(s) 495, 522, 553, 582
BspMAI CTGCAG 1 cut(s) 508
BspQI GCTCTTC 1 cut(s) 672
BsrDI GCAATG 2 cut(s) 16, 39
BsrFI RCCGGY 3 cut(s) 124, 241, 364
BsrI ACTGG 3 cut(s) 188, 224, 272
BssAI RCCGGY 3 cut(s) 124, 241, 364
BssECI CCNNGG 5 cut(s) 25, 318, 348, 408, 471
BssMI GATC 1 cut(s) 598
BssT1I CCWWGG 2 cut(s) 25, 471
Bst2UI CCWGG 1 cut(s) 549
Bst6I CTCTTC 1 cut(s) 672
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 588, 671
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 2 cut(s) 134, 665
BstH2I RGCGCY 2 cut(s) 282, 533
BstHHI GCGC 3 cut(s) 233, 281, 532
BstKTI GATC 1 cut(s) 601
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 1 cut(s) 598
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 36, 95, 434
BstNI CCWGG 1 cut(s) 549
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 6 cut(s) 318, 348, 408, 517, 547, 577
BstSFI CTRYAG 1 cut(s) 504
BstSLI GKGCMC 2 cut(s) 524, 584
BstV1I GCAGC 5 cut(s) 136, 157, 518, 570, 581
BsuRI GGCC 8 cut(s) 63, 245, 260, 293, 368, 413, 522, 582
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 2 cut(s) 134, 665
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 243
CfoI GCGC 3 cut(s) 233, 281, 532
Cfr10I RCCGGY 3 cut(s) 124, 241, 364
Cfr13I GGNCC 5 cut(s) 520, 521, 551, 580, 581
CspAI ACCGGT 1 cut(s) 124
DdeI CTNAG 2 cut(s) 588, 671
DpnI GATC 1 cut(s) 600
DpnII GATC 1 cut(s) 598
EaeI YGGCCR 5 cut(s) 243, 258, 291, 366, 411
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Ecl136II GAGCTC 1 cut(s) 545
Eco130I CCWWGG 2 cut(s) 25, 471
Eco24I GRGCYC 4 cut(s) 524, 547, 584, 667
Eco47I GGWCC 1 cut(s) 551
Eco47III AGCGCT 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 545
Eco91I GGTNACC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 545
EcoO65I GGTNACC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 547
EcoT14I CCWWGG 2 cut(s) 25, 471
EcoT38I GRGCYC 4 cut(s) 524, 547, 584, 667
ErhI CCWWGG 2 cut(s) 25, 471
Esp3I CGTCTC 1 cut(s) 591
FaqI GGGAC 2 cut(s) 440, 537
FauI CCCGC 4 cut(s) 79, 246, 313, 343
FbaI TGATCA 1 cut(s) 598
Fnu4HI GCNGC 6 cut(s) 150, 171, 174, 507, 559, 570
FokI GGATG 2 cut(s) 121, 672
FriOI GRGCYC 4 cut(s) 524, 547, 584, 667
Fsp4HI GCNGC 6 cut(s) 150, 171, 174, 507, 559, 570
FspBI CTAG 1 cut(s) 26
GlaI GCGC 3 cut(s) 232, 280, 531
GluI GCNGC 6 cut(s) 150, 171, 174, 507, 559, 570
GsaI CCCAGC 6 cut(s) 149, 170, 383, 449, 461, 558
GsuI CTGGAG 1 cut(s) 207
HaeII RGCGCY 2 cut(s) 282, 533
HaeIII GGCC 8 cut(s) 63, 245, 260, 293, 368, 413, 522, 582
HhaI GCGC 3 cut(s) 233, 281, 532
Hin6I GCGC 3 cut(s) 231, 279, 530
HinP1I GCGC 3 cut(s) 231, 279, 530
HinfI GANTC 2 cut(s) 4, 54
HphI GGTGA 6 cut(s) 72, 121, 150, 171, 192, 487
Hpy166II GTNNAC 1 cut(s) 624
Hpy188I TCNGA 4 cut(s) 59, 598, 603, 659
Hpy8I GTNNAC 1 cut(s) 624
HpyCH4V TGCA 4 cut(s) 39, 437, 506, 631
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 95, 434
HpyF3I CTNAG 2 cut(s) 588, 671
HspAI GCGC 3 cut(s) 231, 279, 530
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 1 cut(s) 598
LguI GCTCTTC 1 cut(s) 672
LmnI GCTCC 8 cut(s) 103, 286, 433, 466, 499, 542, 550, 645
Lsp1109I GCAGC 5 cut(s) 136, 157, 518, 570, 581
LweI GCATC 4 cut(s) 206, 446, 570, 669
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 127, 190
MalI GATC 1 cut(s) 600
MboI GATC 1 cut(s) 598
MboII GAAGA 3 cut(s) 628, 646, 659
MhlI GDGCHC 4 cut(s) 524, 547, 584, 667
MlyI GAGTC 2 cut(s) 13, 63
MmeI TCCRAC 4 cut(s) 37, 128, 520, 521
MroNI GCCGGC 1 cut(s) 241
MspA1I CMGCKG 2 cut(s) 149, 170
MspR9I CCNGG 6 cut(s) 320, 350, 410, 519, 549, 579
MvaI CCWGG 1 cut(s) 549
MwoI GCNNNNNNNGC 3 cut(s) 36, 95, 434
NaeI GCCGGC 1 cut(s) 243
NciI CCSGG 5 cut(s) 320, 350, 410, 519, 579
NdeII GATC 1 cut(s) 598
NgoMIV GCCGGC 1 cut(s) 241
NlaIV GGNNCC 4 cut(s) 495, 522, 553, 582
NmuCI GTSAC 2 cut(s) 127, 190
PciSI GCTCTTC 1 cut(s) 672
PdiI GCCGGC 1 cut(s) 243
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 6 cut(s) 151, 172, 175, 508, 560, 571
PleI GAGTC 2 cut(s) 12, 62
PpsI GAGTC 2 cut(s) 12, 62
Psp124BI GAGCTC 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 547
PspEI GGTNACC 1 cut(s) 127
PspFI CCCAGC 6 cut(s) 145, 166, 379, 445, 457, 554
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 4 cut(s) 495, 522, 553, 582
PspOMI GGGCCC 2 cut(s) 520, 580
PspPI GGNCC 5 cut(s) 520, 521, 551, 580, 581
PstI CTGCAG 1 cut(s) 508
PvuII CAGCTG 2 cut(s) 149, 170
SacI GAGCTC 1 cut(s) 547
SapI GCTCTTC 1 cut(s) 672
SatI GCNGC 6 cut(s) 150, 171, 174, 507, 559, 570
Sau3AI GATC 1 cut(s) 598
Sau96I GGNCC 5 cut(s) 520, 521, 551, 580, 581
SchI GAGTC 2 cut(s) 13, 63
ScrFI CCNGG 6 cut(s) 320, 350, 410, 519, 549, 579
SduI GDGCHC 4 cut(s) 524, 547, 584, 667
SfaNI GCATC 4 cut(s) 206, 446, 570, 669
SfcI CTRYAG 1 cut(s) 504
SinI GGWCC 1 cut(s) 551
SsiI CCGC 8 cut(s) 44, 72, 87, 174, 195, 239, 306, 336
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 547
StyD4I CCNGG 6 cut(s) 318, 348, 408, 517, 547, 577
StyI CCWWGG 2 cut(s) 25, 471
TaqI TCGA 1 cut(s) 564
TauI GCSGC 1 cut(s) 176
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 2 cut(s) 127, 190
TseI GCWGC 5 cut(s) 149, 170, 506, 558, 569
Tsp45I GTSAC 2 cut(s) 127, 190
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 551
XmaJI CCTAGG 1 cut(s) 25
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.