Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

27005732 .. 27007385

Gene Structure 1654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1291700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAGCGGAACAACATCTTCACCATCGCACTCATCTGCCTTCTCGTCGCCGGCGTCGGAGGACAGGCTCCATCATCCGCGCCCACTAACTCTCCGGCCACTCCAGCCGCCACCCCTTCAGCTACTACACCAGCTGCAGCTCCTAAGCCCAAGTCACCATCTCCGGTTGCCACCCCCAAATCTTCTCCCACTCCGGCGTCGGCTCCACCCAAGACGGCCGCTGCTCCCACTCCGGTGGCCACTCCACCTACAGCTACCGTTTCACCCCCATTGCCGACTCCTGAGAGCTCCCCACCGGCTAAGGCTCCGGTCAGCTCTCCACCGGCCAAATCTCCTCCGGCAGCCGCCCCTGCTCCCGCAGCTGAGCCACCCACTACTCCTGAGGTCCCCGCTCCGGCTCCCAGCAAGAAGCCGAAGCACGAGTCTCCGGCGGCTGCTCCGACTCCCAGCAAGAGCAAGAGCAAGAAGCCGAAGCACAAGTCTCCGGCGGCTGCTCCGACTCCGGATATGGCCAGCCCACCGGCGCCAGAGGGACCTGAGGCTTCGTCTCCCGATGCTTCGTCTCCGGATCCTTCTACAGCAGCTGACGAGCAGTGGTGCAATGACGATCAGGTCCCTGCACAAGGTGGTCGGATCCATCGCATTGGGATGGGCAGTATTGGCATTATGCTAAAAGAAGAAGAGGAAGAGAGAGACAGAGAGGACGCGGTGTTTGTTGTAATGCTGCCAGCTGTCATTATTTTAATCTTTTGTCGGGCGTACTGTTCTTGGGTTGATTATTTTATCTATTTAGCAGAGACCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

27.22

Weight (kDa)

6.32

Isoelectric Point (pI)

83.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	611
AccB1I	GGYRCC	1 cut(s)	523
AccBSI	CCGCTC	2 cut(s)	7, 392
AccII	CGCG	2 cut(s)	80, 707
AccIII	TCCGGA	2 cut(s)	502, 565
AclWI	GGATC	4 cut(s)	563, 576, 628, 641
AcoI	YGGCCR	5 cut(s)	96, 216, 237, 324, 510
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	3 cut(s)	54, 197, 524
AdeI	CACNNNGTG	1 cut(s)	626
AfaI	GTAC	1 cut(s)	761
AfiI	CCNNNNNNNGG	2 cut(s)	394, 623
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	9 cut(s)	122, 134, 140, 254, 288, 315, 362, 584, 731
AluI	AGCT	9 cut(s)	122, 134, 140, 254, 288, 315, 362, 584, 731
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	6 cut(s)	429, 486, 552, 567, 687, 791
AlwI	GGATC	4 cut(s)	563, 576, 628, 641
AlwNI	CAGNNNCTG	1 cut(s)	584
Aor13HI	TCCGGA	2 cut(s)	502, 565
AoxI	GGCC	5 cut(s)	96, 216, 237, 324, 510
ApeKI	GCWGC	9 cut(s)	134, 137, 221, 341, 359, 434, 491, 581, 724
ArsI	GACNNNNNNTTYG	6 cut(s)	407, 439, 464, 496, 695, 727
AspLEI	GCGC	2 cut(s)	82, 526
AspS9I	GGNCC	3 cut(s)	385, 533, 613
AsuC2I	CCSGG	1 cut(s)	802
AsuHPI	GGTGA	3 cut(s)	13, 147, 255
AvaII	GGWCC	3 cut(s)	385, 533, 613
AxyI	CCTNAGG	2 cut(s)	381, 537
BalI	TGGCCA	2 cut(s)	239, 512
BamHI	GGATCC	2 cut(s)	568, 633
BanI	GGYRCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	290
BauI	CACGAG	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	9 cut(s)	121, 149, 208, 353, 371, 421, 478, 593, 711
BccI	CCATC	5 cut(s)	32, 79, 166, 643, 645
BceAI	ACGGC	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	802
BcoDI	GTCTC	6 cut(s)	429, 486, 552, 567, 687, 791
BfmI	CTRYAG	3 cut(s)	135, 249, 576
BfoI	RGCGCY	1 cut(s)	527
BlpI	GCTNAGC	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	802
Bme18I	GGWCC	3 cut(s)	385, 533, 613
BmgT120I	GGNCC	3 cut(s)	385, 533, 613
BmrFI	CCNGG	1 cut(s)	802
BmsI	GCATC	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	87
Bpu10I	CCTNAGC	2 cut(s)	144, 300
Bpu1102I	GCTNAGC	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	802
BsaHI	GRCGYC	3 cut(s)	54, 197, 524
BsaI	GGTCTC	1 cut(s)	791
BsaWI	WCCGGW	5 cut(s)	163, 232, 307, 502, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 623
Bse118I	RCCGGY	4 cut(s)	50, 295, 322, 520
Bse21I	CCTNAGG	2 cut(s)	381, 537
Bse3DI	GCAATG	2 cut(s)	269, 607
BseAI	TCCGGA	2 cut(s)	502, 565
BseGI	GGATG	2 cut(s)	74, 654
BseLI	CCNNNNNNNGG	2 cut(s)	394, 623
BseMI	GCAATG	2 cut(s)	269, 607
BseMII	CTCAG	4 cut(s)	273, 354, 372, 528
BseRI	GAGGAG	1 cut(s)	324
BseX3I	CGGCCG	1 cut(s)	216
BseXI	GCAGC	9 cut(s)	121, 149, 208, 353, 371, 421, 478, 593, 711
BseYI	CCCAGC	2 cut(s)	401, 446
BsgI	GTGCAG	1 cut(s)	603
Bsh1236I	CGCG	2 cut(s)	80, 707
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	5 cut(s)	98, 218, 239, 326, 512
BshNI	GGYRCC	1 cut(s)	523
BsiEI	CGRYCG	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	290
BslFI	GGGAC	3 cut(s)	371, 546, 599
BslI	CCNNNNNNNGG	2 cut(s)	394, 623
BsmAI	GTCTC	6 cut(s)	429, 486, 552, 567, 687, 791
BsmBI	CGTCTC	2 cut(s)	552, 567
BsmFI	GGGAC	3 cut(s)	371, 546, 599
BsnI	GGCC	5 cut(s)	98, 218, 239, 326, 512
Bso31I	GGTCTC	1 cut(s)	791
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp13I	TCCGGA	2 cut(s)	502, 565
Bsp143I	GATC	3 cut(s)	568, 607, 633
Bsp1720I	GCTNAGC	1 cut(s)	363
BspANI	GGCC	5 cut(s)	98, 218, 239, 326, 512
BspCNI	CTCAG	4 cut(s)	274, 355, 373, 529
BspEI	TCCGGA	2 cut(s)	502, 565
BspFNI	CGCG	2 cut(s)	80, 707
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	4 cut(s)	563, 576, 628, 641
BspT107I	GGYRCC	1 cut(s)	523
BspTNI	GGTCTC	1 cut(s)	791
BsrBI	CCGCTC	2 cut(s)	7, 392
BsrDI	GCAATG	2 cut(s)	269, 607
BsrFI	RCCGGY	4 cut(s)	50, 295, 322, 520
BssAI	RCCGGY	4 cut(s)	50, 295, 322, 520
BssMI	GATC	3 cut(s)	568, 607, 633
BssNI	GRCGYC	3 cut(s)	54, 197, 524
BssSI	CACGAG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	419
Bst4CI	ACNGT	2 cut(s)	259, 764
Bst6I	CTCTTC	2 cut(s)	675, 681
BstACI	GRCGYC	3 cut(s)	54, 197, 524
BstC8I	GCNNGC	3 cut(s)	52, 514, 729
BstDEI	CTNAG	6 cut(s)	144, 282, 300, 363, 381, 537
BstENI	CCTNNNNNAGG	1 cut(s)	621
BstF5I	GGATG	2 cut(s)	74, 654
BstFNI	CGCG	2 cut(s)	80, 707
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	2 cut(s)	82, 526
BstKTI	GATC	3 cut(s)	571, 610, 636
BstMAI	GTCTC	6 cut(s)	429, 486, 552, 567, 687, 791
BstMBI	GATC	3 cut(s)	568, 607, 633
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 350, 359, 660
BstSCI	CCNGG	1 cut(s)	800
BstSFI	CTRYAG	3 cut(s)	135, 249, 576
BstUI	CGCG	2 cut(s)	80, 707
BstV1I	GCAGC	9 cut(s)	121, 149, 208, 353, 371, 421, 478, 593, 711
BstX2I	RGATCY	2 cut(s)	568, 633
BstXI	CCANNNNNNTGG	2 cut(s)	235, 644
BstYI	RGATCY	2 cut(s)	568, 633
BstZI	CGGCCG	1 cut(s)	216
Bsu36I	CCTNAGG	2 cut(s)	381, 537
BsuRI	GGCC	5 cut(s)	98, 218, 239, 326, 512
BtgZI	GCGATG	2 cut(s)	10, 623
BtsCI	GGATG	2 cut(s)	74, 654
BtsI	GCAGTG	1 cut(s)	599
BtsIMutI	CAGTG	1 cut(s)	599
Cac8I	GCNNGC	3 cut(s)	52, 514, 729
CaiI	CAGNNNCTG	1 cut(s)	584
CfoI	GCGC	2 cut(s)	82, 526
Cfr10I	RCCGGY	4 cut(s)	50, 295, 322, 520
Cfr13I	GGNCC	3 cut(s)	385, 533, 613
CseI	GACGC	3 cut(s)	43, 186, 713
Csp6I	GTAC	1 cut(s)	760
CviQI	GTAC	1 cut(s)	760
DdeI	CTNAG	6 cut(s)	144, 282, 300, 363, 381, 537
DinI	GGCGCC	1 cut(s)	525
DpnI	GATC	3 cut(s)	570, 609, 635
DpnII	GATC	3 cut(s)	568, 607, 633
DraIII	CACNNNGTG	1 cut(s)	626
DrdI	GACNNNNNNGTC	1 cut(s)	611
DseDI	GACNNNNNNGTC	1 cut(s)	611
EaeI	YGGCCR	5 cut(s)	96, 216, 237, 324, 510
EagI	CGGCCG	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	675, 681
EarI	CTCTTC	2 cut(s)	675, 681
Ecl136II	GAGCTC	1 cut(s)	288
EclXI	CGGCCG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	791
Eco47I	GGWCC	3 cut(s)	385, 533, 613
Eco52I	CGGCCG	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	2 cut(s)	381, 537
EcoICRI	GAGCTC	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	621
EcoO109I	RGGNCCY	3 cut(s)	385, 533, 613
EcoT38I	GRGCYC	1 cut(s)	290
EgeI	GGCGCC	1 cut(s)	525
EheI	GGCGCC	1 cut(s)	525
Esp3I	CGTCTC	2 cut(s)	552, 567
FaiI	YATR	2 cut(s)	509, 668
FaqI	GGGAC	3 cut(s)	371, 546, 599
FauI	CCCGC	2 cut(s)	364, 397
FokI	GGATG	2 cut(s)	61, 661
FriOI	GRGCYC	1 cut(s)	290
GlaI	GCGC	2 cut(s)	81, 525
GsaI	CCCAGC	2 cut(s)	405, 450
GsuI	CTGGAG	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	527
HaeIII	GGCC	5 cut(s)	98, 218, 239, 326, 512
HgaI	GACGC	3 cut(s)	43, 186, 713
HhaI	GCGC	2 cut(s)	82, 526
Hin1I	GRCGYC	3 cut(s)	54, 197, 524
Hin6I	GCGC	2 cut(s)	80, 524
HinP1I	GCGC	2 cut(s)	80, 524
HinfI	GANTC	4 cut(s)	277, 422, 442, 499
HphI	GGTGA	3 cut(s)	13, 147, 255
Hpy188I	TCNGA	4 cut(s)	59, 441, 498, 633
Hpy188III	TCNNGA	5 cut(s)	281, 380, 503, 551, 566
Hpy99I	CGWCG	3 cut(s)	50, 59, 202
HpyAV	CCTTC	3 cut(s)	50, 126, 582
HpyCH4III	ACNGT	2 cut(s)	259, 764
HpyCH4V	TGCA	3 cut(s)	137, 600, 620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 350, 359, 660
HpyF3I	CTNAG	6 cut(s)	144, 282, 300, 363, 381, 537
Hsp92I	GRCGYC	3 cut(s)	54, 197, 524
HspAI	GCGC	2 cut(s)	80, 524
KasI	GGCGCC	1 cut(s)	523
Kpn2I	TCCGGA	2 cut(s)	502, 565
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	568, 607, 633
Lsp1109I	GCAGC	9 cut(s)	121, 149, 208, 353, 371, 421, 478, 593, 711
LweI	GCATC	1 cut(s)	544
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	3 cut(s)	570, 609, 635
MbiI	CCGCTC	2 cut(s)	7, 392
MboI	GATC	3 cut(s)	568, 607, 633
MboII	GAAGA	5 cut(s)	10, 174, 689, 692, 698
MflI	RGATCY	2 cut(s)	568, 633
MhlI	GDGCHC	1 cut(s)	290
MlsI	TGGCCA	2 cut(s)	239, 512
MluNI	TGGCCA	2 cut(s)	239, 512
Mly113I	GGCGCC	1 cut(s)	524
MlyI	GAGTC	4 cut(s)	271, 431, 436, 493
MmeI	TCCRAC	4 cut(s)	37, 464, 521, 611
MnlI	CCTC	7 cut(s)	53, 345, 376, 523, 532, 676, 694
Mox20I	TGGCCA	2 cut(s)	239, 512
MreI	CGCCGGCG	1 cut(s)	50
MroI	TCCGGA	2 cut(s)	502, 565
MroNI	GCCGGC	1 cut(s)	50
MscI	TGGCCA	2 cut(s)	239, 512
MseI	TTAA	1 cut(s)	743
MslI	CAYNNNNRTG	2 cut(s)	233, 647
Msp20I	TGGCCA	2 cut(s)	239, 512
MspA1I	CMGCKG	5 cut(s)	134, 221, 362, 584, 731
MspR9I	CCNGG	1 cut(s)	802
MvnI	CGCG	2 cut(s)	80, 707
MwoI	GCNNNNNNNGC	4 cut(s)	104, 350, 359, 660
NaeI	GCCGGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	524
NciI	CCSGG	1 cut(s)	802
NdeII	GATC	3 cut(s)	568, 607, 633
NgoMIV	GCCGGC	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	153
OliI	CACNNNNGTG	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	52
PleI	GAGTC	4 cut(s)	271, 430, 436, 493
PluTI	GGCGCC	1 cut(s)	527
PpsI	GAGTC	4 cut(s)	271, 430, 436, 493
PpuMI	RGGWCCY	3 cut(s)	385, 533, 613
Psp124BI	GAGCTC	1 cut(s)	290
Psp5II	RGGWCCY	3 cut(s)	385, 533, 613
PspFI	CCCAGC	2 cut(s)	401, 446
PspPI	GGNCC	3 cut(s)	385, 533, 613
PspPPI	RGGWCCY	3 cut(s)	385, 533, 613
PstI	CTGCAG	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	2 cut(s)	568, 633
PvuII	CAGCTG	4 cut(s)	134, 362, 584, 731
RsaI	GTAC	1 cut(s)	761
RsaNI	GTAC	1 cut(s)	760
RseI	CAYNNNNRTG	2 cut(s)	233, 647
SacI	GAGCTC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	743
Sau3AI	GATC	3 cut(s)	568, 607, 633
Sau96I	GGNCC	3 cut(s)	385, 533, 613
SchI	GAGTC	4 cut(s)	271, 431, 436, 493
ScrFI	CCNGG	1 cut(s)	802
SduI	GDGCHC	1 cut(s)	290
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	3 cut(s)	135, 249, 576
SfoI	GGCGCC	1 cut(s)	525
SgrAI	CRCCGGYG	2 cut(s)	50, 520
SinI	GGWCC	3 cut(s)	385, 533, 613
SmiMI	CAYNNNNRTG	2 cut(s)	233, 647
SspDI	GGCGCC	1 cut(s)	523
SstI	GAGCTC	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	800
TaaI	ACNGT	2 cut(s)	259, 764
TauI	GCSGC	5 cut(s)	110, 221, 347, 434, 491
Tru1I	TTAA	1 cut(s)	743
Tru9I	TTAA	1 cut(s)	743
TscAI	CASTG	1 cut(s)	599
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	9 cut(s)	134, 137, 221, 341, 359, 434, 491, 581, 724
Tsp45I	GTSAC	1 cut(s)	153
TspRI	CASTG	1 cut(s)	599
VpaK11BI	GGWCC	3 cut(s)	385, 533, 613
XagI	CCTNNNNNAGG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.