Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

18300455 .. 18301660

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017563

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGATCGCAGCACCGCCGTAACGTTCGCGTTCATCTGCATTATCGTCGCCGGTGTCGGAGGTCAAGCTCCGGCTTCCGCACCCACTAAATCTACAGCCACTCCGGCTTCCGCACCCACTAAATCTCCCGCCACTCCCGCCCCCACCACATCACCATCCGCCGCTCCTTCAAAGCCCAAGTCCCCAGCTCCCGTCGCTACACCGGCCTCAGCTCCGACCGCCGCCCCACCTACCCCCGTCGCCGCCGCTCCAACTCCGGTAGCCACTCCTCCCGCTAAATCTCCGCCGACTGCTGCACCTACACCGGCCGTAACTCCGGTCAGCGCACCCCCCGCCAGTCCTCCCGCCAAATCTCCACCGACTGCTGCTCCCACACCGGCCGCCGTCCCCGTAGCACCGGTTTCTCCTCCCTCCGTCGCACCTGTTGCTCCGGCTCCAACATCCGAGACTCCTTCAGCTGCTCCCGGTCCGGCGACTCTCAGTCCACCCGCACCGCCAACTGAGGCCCCCGGAACGAGCCCTGAAGCGGGTATGGGTCCCGGTCCTTCCGGCGCCGCAGCCGATGAGAGTGGAGCAGAGAAGGTGCATTACATGGTTGGATCCATTGCATTGGGGTGGGGTGTGATCATGGCATTGTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

20.01

Weight (kDa)

7.88

Isoelectric Point (pI)

84.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	551
AccBSI	CCGCTC	2 cut(s)	164, 248
AccII	CGCG	1 cut(s)	29
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	3 cut(s)	12, 594, 607
AcoI	YGGCCR	2 cut(s)	306, 378
AcuI	CTGAAG	2 cut(s)	438, 543
AcyI	GRCGYC	1 cut(s)	552
AfiI	CCNNNNNNNGG	2 cut(s)	526, 527
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	1 cut(s)	171
AhdI	GACNNNNNGTC	1 cut(s)	480
AluBI	AGCT	4 cut(s)	68, 188, 212, 458
AluI	AGCT	4 cut(s)	68, 188, 212, 458
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	3 cut(s)	12, 594, 607
AoxI	GGCC	4 cut(s)	204, 306, 378, 504
ApeKI	GCWGC	5 cut(s)	9, 293, 365, 458, 557
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AsiGI	ACCGGT	1 cut(s)	397
AspLEI	GCGC	2 cut(s)	326, 554
AspS9I	GGNCC	4 cut(s)	467, 505, 536, 542
AsuC2I	CCSGG	3 cut(s)	465, 510, 540
AsuHPI	GGTGA	1 cut(s)	144
AvaII	GGWCC	3 cut(s)	467, 536, 542
BamHI	GGATCC	1 cut(s)	599
BanI	GGYRCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	521
BarI	GAAGNNNNNNTAC	2 cut(s)	572, 604
BbvCI	CCTCAGC	1 cut(s)	208
BbvI	GCAGC	5 cut(s)	21, 280, 352, 445, 569
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	3 cut(s)	2, 293, 368
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BclI	TGATCA	1 cut(s)	624
BcnI	CCSGG	3 cut(s)	465, 510, 540
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	643
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	555
BglI	GCCNNNNNGGC	1 cut(s)	104
Bme1390I	CCNGG	3 cut(s)	465, 510, 540
Bme18I	GGWCC	3 cut(s)	467, 536, 542
BmeRI	GACNNNNNGTC	1 cut(s)	480
BmgT120I	GGNCC	4 cut(s)	467, 505, 536, 542
BmiI	GGNNCC	6 cut(s)	435, 507, 537, 538, 553, 601
BmrFI	CCNGG	3 cut(s)	465, 510, 540
Bpu10I	CCTNAGC	1 cut(s)	208
BpuMI	CCSGG	3 cut(s)	465, 510, 540
BsaHI	GRCGYC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	508
BsaWI	WCCGGW	3 cut(s)	256, 316, 397
BsaXI	ACNNNNNCTCC	6 cut(s)	85, 109, 115, 139, 352, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 527
Bse118I	RCCGGY	5 cut(s)	50, 202, 304, 376, 397
Bse1I	ACTGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	603
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	2 cut(s)	155, 440
BseLI	CCNNNNNNNGG	2 cut(s)	526, 527
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	3 cut(s)	222, 492, 493
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	2 cut(s)	258, 396
BseX3I	CGGCCG	2 cut(s)	306, 378
BseXI	GCAGC	5 cut(s)	21, 280, 352, 445, 569
BseYI	CCCAGC	1 cut(s)	184
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	3 cut(s)	219, 309, 381
BshFI	GGCC	4 cut(s)	206, 308, 380, 506
BshNI	GGYRCC	1 cut(s)	551
BshTI	ACCGGT	1 cut(s)	397
BsiEI	CGRYCG	3 cut(s)	219, 309, 381
BslFI	GGGAC	3 cut(s)	166, 371, 522
BslI	CCNNNNNNNGG	2 cut(s)	526, 527
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	3 cut(s)	166, 371, 522
BsnI	GGCC	4 cut(s)	206, 308, 380, 506
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	3 cut(s)	4, 599, 624
BspANI	GGCC	4 cut(s)	206, 308, 380, 506
BspCNI	CTCAG	3 cut(s)	221, 492, 493
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	6 cut(s)	435, 507, 537, 538, 553, 601
BspPI	GGATC	3 cut(s)	12, 594, 607
BspT107I	GGYRCC	1 cut(s)	551
BsrBI	CCGCTC	2 cut(s)	164, 248
BsrDI	GCAATG	1 cut(s)	603
BsrFI	RCCGGY	5 cut(s)	50, 202, 304, 376, 397
BsrI	ACTGG	1 cut(s)	336
BssAI	RCCGGY	5 cut(s)	50, 202, 304, 376, 397
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	3 cut(s)	4, 599, 624
BssNI	GRCGYC	1 cut(s)	552
BstACI	GRCGYC	1 cut(s)	552
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstDEI	CTNAG	3 cut(s)	208, 479, 501
BstF5I	GGATG	2 cut(s)	155, 440
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	2 cut(s)	326, 554
BstKTI	GATC	3 cut(s)	7, 602, 627
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	3 cut(s)	4, 599, 624
BstMCI	CGRYCG	3 cut(s)	219, 309, 381
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 137, 194, 203, 218, 332, 425
BstSCI	CCNGG	3 cut(s)	463, 508, 538
BstSFI	CTRYAG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	5 cut(s)	21, 280, 352, 445, 569
BstX2I	RGATCY	1 cut(s)	599
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	599
BstZI	CGGCCG	2 cut(s)	306, 378
BsuRI	GGCC	4 cut(s)	206, 308, 380, 506
BtsCI	GGATG	2 cut(s)	155, 440
CfoI	GCGC	2 cut(s)	326, 554
Cfr10I	RCCGGY	5 cut(s)	50, 202, 304, 376, 397
Cfr13I	GGNCC	4 cut(s)	467, 505, 536, 542
CpoI	CGGWCCG	1 cut(s)	467
CspAI	ACCGGT	1 cut(s)	397
CspI	CGGWCCG	1 cut(s)	467
CviAII	CATG	2 cut(s)	592, 628
DdeI	CTNAG	3 cut(s)	208, 479, 501
DinI	GGCGCC	1 cut(s)	553
DpnI	GATC	3 cut(s)	6, 601, 626
DpnII	GATC	3 cut(s)	4, 599, 624
DriI	GACNNNNNGTC	1 cut(s)	480
EaeI	YGGCCR	2 cut(s)	306, 378
EagI	CGGCCG	2 cut(s)	306, 378
Eam1105I	GACNNNNNGTC	1 cut(s)	480
EciI	GGCGGA	2 cut(s)	148, 273
EclXI	CGGCCG	2 cut(s)	306, 378
Eco24I	GRGCYC	1 cut(s)	521
Eco47I	GGWCC	3 cut(s)	467, 536, 542
Eco52I	CGGCCG	2 cut(s)	306, 378
Eco57I	CTGAAG	2 cut(s)	438, 543
EcoO109I	RGGNCCY	2 cut(s)	505, 536
EcoT38I	GRGCYC	1 cut(s)	521
EgeI	GGCGCC	1 cut(s)	553
EheI	GGCGCC	1 cut(s)	553
FaeI	CATG	2 cut(s)	595, 631
FaiI	YATR	3 cut(s)	533, 593, 629
FaqI	GGGAC	3 cut(s)	166, 371, 522
FatI	CATG	2 cut(s)	591, 627
FauI	CCCGC	7 cut(s)	136, 145, 280, 340, 352, 496, 520
FbaI	TGATCA	1 cut(s)	624
FokI	GGATG	2 cut(s)	142, 427
FriOI	GRGCYC	1 cut(s)	521
FspBI	CTAG	1 cut(s)	643
GlaI	GCGC	2 cut(s)	325, 553
GsaI	CCCAGC	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	4 cut(s)	206, 308, 380, 506
HhaI	GCGC	2 cut(s)	326, 554
Hin1I	GRCGYC	1 cut(s)	552
Hin1II	CATG	2 cut(s)	595, 631
Hin6I	GCGC	2 cut(s)	324, 552
HinP1I	GCGC	2 cut(s)	324, 552
HinfI	GANTC	2 cut(s)	448, 475
HphI	GGTGA	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	3 cut(s)	59, 216, 445
Hpy8I	GTNNAC	1 cut(s)	485
Hpy99I	CGWCG	4 cut(s)	50, 197, 242, 419
HpyAV	CCTTC	4 cut(s)	177, 462, 555, 574
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	39, 296, 586, 608
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 137, 194, 203, 218, 332, 425
HpyF3I	CTNAG	3 cut(s)	208, 479, 501
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	552
Hsp92II	CATG	2 cut(s)	595, 631
HspAI	GCGC	2 cut(s)	324, 552
KasI	GGCGCC	1 cut(s)	551
KflI	GGGWCCC	1 cut(s)	536
Ksp22I	TGATCA	1 cut(s)	624
Kzo9I	GATC	3 cut(s)	4, 599, 624
Lsp1109I	GCAGC	5 cut(s)	21, 280, 352, 445, 569
MaeI	CTAG	1 cut(s)	643
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	19, 310
MalI	GATC	3 cut(s)	6, 601, 626
MbiI	CCGCTC	2 cut(s)	164, 248
MboI	GATC	3 cut(s)	4, 599, 624
MflI	RGATCY	1 cut(s)	599
MhlI	GDGCHC	1 cut(s)	521
Mly113I	GGCGCC	1 cut(s)	552
MlyI	GAGTC	2 cut(s)	442, 469
MmeI	TCCRAC	5 cut(s)	37, 239, 275, 461, 577
MnlI	CCTC	7 cut(s)	53, 217, 279, 351, 417, 421, 496
MslI	CAYNNNNRTG	1 cut(s)	613
MspA1I	CMGCKG	1 cut(s)	458
MspR9I	CCNGG	3 cut(s)	465, 510, 540
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	7 cut(s)	104, 137, 194, 203, 218, 332, 425
NarI	GGCGCC	1 cut(s)	552
NciI	CCSGG	3 cut(s)	465, 510, 540
NdeII	GATC	3 cut(s)	4, 599, 624
NlaIII	CATG	2 cut(s)	595, 631
NlaIV	GGNNCC	6 cut(s)	435, 507, 537, 538, 553, 601
PinAI	ACCGGT	1 cut(s)	397
PleI	GAGTC	2 cut(s)	442, 469
PluTI	GGCGCC	1 cut(s)	555
PpsI	GAGTC	2 cut(s)	442, 469
PpuMI	RGGWCCY	1 cut(s)	536
Psp1406I	AACGTT	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	536
PspFI	CCCAGC	1 cut(s)	184
PspN4I	GGNNCC	6 cut(s)	435, 507, 537, 538, 553, 601
PspPI	GGNCC	4 cut(s)	467, 505, 536, 542
PspPPI	RGGWCCY	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	599
PvuII	CAGCTG	1 cut(s)	458
RseI	CAYNNNNRTG	1 cut(s)	613
Rsr2I	CGGWCCG	1 cut(s)	467
RsrII	CGGWCCG	1 cut(s)	467
Sau3AI	GATC	3 cut(s)	4, 599, 624
Sau96I	GGNCC	4 cut(s)	467, 505, 536, 542
SchI	GAGTC	2 cut(s)	442, 469
ScrFI	CCNGG	3 cut(s)	465, 510, 540
SduI	GDGCHC	1 cut(s)	521
SfcI	CTRYAG	1 cut(s)	93
SfoI	GGCGCC	1 cut(s)	553
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	3 cut(s)	467, 536, 542
SmiMI	CAYNNNNRTG	1 cut(s)	613
SspDI	GGCGCC	1 cut(s)	551
SspMI	CTAG	1 cut(s)	643
StyD4I	CCNGG	3 cut(s)	463, 508, 538
TaiI	ACGT	1 cut(s)	26
TauI	GCSGC	6 cut(s)	164, 224, 245, 248, 383, 557
TseI	GCWGC	5 cut(s)	9, 293, 365, 458, 557
TspDTI	ATGAA	1 cut(s)	22
TspGWI	ACGGA	1 cut(s)	403
VpaK11BI	GGWCC	3 cut(s)	467, 536, 542
XspI	CTAG	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.