Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

17520197 .. 17522400

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G015190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGATCGCAGCACCGCCATAACGTTCGCCTTCATCTGCATTATCGTCGCCGGCGTCGGAGGTCAAGCTCCTGCTTCCGCACCCACTAAATCTACCGCCACTCCGGCTTCCGCACCCACTAAATCTACCGCCACTCCGACTTCCGCACCCACTAAATCTCCCGCCACTCCCGCCCCCACCACATCACCATCCGCCGCTCCTTCAAAGCCCAAGTCCCCAGCTCCCGTCGCCACACCGGCCTCAGCTCCGACCGCCGCTCCACCTACCCCCGTCGCCGCCGCTCCAACTCCGGTGGCCACTCCTCCCGCGAAATCTCCGCCGACTGCTGCACCTACAGCGGCCGTAACTCCGGTCAGCGCGCCCACCGCTTCTCCTCCCGCGAAATCTCCACCGACCGCTGCTCCCACACCAACCGCCGTCCCCGTAGCACCGGTTTCTCCTCCCTCCATCGCACCTGCTGCTCCGGCTCCAAAATCCGAGACTCCTTCAGCTGCTCCCGGTCCAGAGGCTGTCAGTCCACCCGCACCGCCACCTGAGACCCCCGGAATGAGCCCTGAAGCCGGTCCTTCCGGCGGTCCTTCCGGCGGCGCAGCCGATGAGAGTGGAGCAGAGAAGGTGCATTACATGGTTGGGTCGATTGCATTGGGATGGGGTATGATCATGGCATTGTGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

21.21

Weight (kDa)

8.82

Isoelectric Point (pI)

84.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	463
Acc36I	ACCTGC	1 cut(s)	463
AccBSI	CCGCTC	3 cut(s)	197, 257, 281
AccII	CGCG	3 cut(s)	308, 359, 380
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	294, 339
AcuI	CTGAAG	2 cut(s)	471, 576
AcyI	GRCGYC	1 cut(s)	54
AfiI	CCNNNNNNNGG	3 cut(s)	560, 572, 584
AgeI	ACCGGT	1 cut(s)	430
AgsI	TTSAA	1 cut(s)	204
AluBI	AGCT	4 cut(s)	68, 221, 245, 491
AluI	AGCT	4 cut(s)	68, 221, 245, 491
Alw26I	GTCTC	2 cut(s)	473, 530
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	3 cut(s)	237, 294, 339
ApeKI	GCWGC	6 cut(s)	9, 326, 398, 458, 491, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AsiGI	ACCGGT	1 cut(s)	430
AspLEI	GCGC	3 cut(s)	359, 361, 590
AspS9I	GGNCC	3 cut(s)	500, 563, 575
AsuC2I	CCSGG	2 cut(s)	498, 543
AsuHPI	GGTGA	1 cut(s)	177
AvaII	GGWCC	3 cut(s)	500, 563, 575
BalI	TGGCCA	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	554
BarI	GAAGNNNNNNTAC	2 cut(s)	605, 637
BbvCI	CCTCAGC	1 cut(s)	241
BbvI	GCAGC	6 cut(s)	21, 313, 385, 445, 478, 602
BccI	CCATC	3 cut(s)	196, 455, 642
BceAI	ACGGC	2 cut(s)	326, 401
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BclI	TGATCA	1 cut(s)	657
BcnI	CCSGG	2 cut(s)	498, 543
BcoDI	GTCTC	2 cut(s)	473, 530
BfaI	CTAG	1 cut(s)	676
BfmI	CTRYAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	463
BglI	GCCNNNNNGGC	2 cut(s)	104, 236
Bme1390I	CCNGG	2 cut(s)	498, 543
Bme18I	GGWCC	3 cut(s)	500, 563, 575
BmgT120I	GGNCC	3 cut(s)	500, 563, 575
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	2 cut(s)	498, 543
Bpu10I	CCTNAGC	1 cut(s)	241
BpuMI	CCSGG	2 cut(s)	498, 543
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	1 cut(s)	541
BsaWI	WCCGGW	3 cut(s)	289, 349, 430
Bsc4I	CCNNNNNNNGG	3 cut(s)	560, 572, 584
Bse118I	RCCGGY	4 cut(s)	50, 235, 430, 560
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	2 cut(s)	188, 653
BseLI	CCNNNNNNNGG	3 cut(s)	560, 572, 584
BseMII	CTCAG	2 cut(s)	255, 525
BsePI	GCGCGC	1 cut(s)	357
BseRI	GAGGAG	3 cut(s)	291, 363, 429
BseX3I	CGGCCG	1 cut(s)	339
BseXI	GCAGC	6 cut(s)	21, 313, 385, 445, 478, 602
BseYI	CCCAGC	1 cut(s)	217
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	3 cut(s)	308, 359, 380
Bsh1285I	CGRYCG	3 cut(s)	252, 342, 396
BshFI	GGCC	3 cut(s)	239, 296, 341
BshTI	ACCGGT	1 cut(s)	430
BsiEI	CGRYCG	3 cut(s)	252, 342, 396
BslFI	GGGAC	2 cut(s)	199, 404
BslI	CCNNNNNNNGG	3 cut(s)	560, 572, 584
BsmAI	GTCTC	2 cut(s)	473, 530
BsmFI	GGGAC	2 cut(s)	199, 404
BsnI	GGCC	3 cut(s)	239, 296, 341
Bso31I	GGTCTC	1 cut(s)	530
Bsp1286I	GDGCHC	1 cut(s)	554
Bsp143I	GATC	2 cut(s)	4, 657
BspANI	GGCC	3 cut(s)	239, 296, 341
BspCNI	CTCAG	2 cut(s)	254, 526
BspFNI	CGCG	3 cut(s)	308, 359, 380
BspLI	GGNNCC	1 cut(s)	468
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	530
BsrBI	CCGCTC	3 cut(s)	197, 257, 281
BsrFI	RCCGGY	4 cut(s)	50, 235, 430, 560
BssAI	RCCGGY	4 cut(s)	50, 235, 430, 560
BssECI	CCNNGG	1 cut(s)	541
BssHII	GCGCGC	1 cut(s)	357
BssMI	GATC	2 cut(s)	4, 657
BssNI	GRCGYC	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	52, 359
BstDEI	CTNAG	2 cut(s)	241, 534
BstF5I	GGATG	2 cut(s)	188, 653
BstFNI	CGCG	3 cut(s)	308, 359, 380
BstHHI	GCGC	3 cut(s)	359, 361, 590
BstKTI	GATC	2 cut(s)	7, 660
BstMAI	GTCTC	2 cut(s)	473, 530
BstMBI	GATC	2 cut(s)	4, 657
BstMCI	CGRYCG	3 cut(s)	252, 342, 396
BstMWI	GCNNNNNNNGC	9 cut(s)	104, 170, 227, 236, 251, 335, 365, 458, 464
BstSCI	CCNGG	2 cut(s)	496, 541
BstSFI	CTRYAG	1 cut(s)	333
BstUI	CGCG	3 cut(s)	308, 359, 380
BstV1I	GCAGC	6 cut(s)	21, 313, 385, 445, 478, 602
BstZI	CGGCCG	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	239, 296, 341
BtgZI	GCGATG	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	188, 653
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	52, 359
CaiI	CAGNNNCTG	1 cut(s)	509
CfoI	GCGC	3 cut(s)	359, 361, 590
Cfr10I	RCCGGY	4 cut(s)	50, 235, 430, 560
Cfr13I	GGNCC	3 cut(s)	500, 563, 575
CseI	GACGC	1 cut(s)	43
CspAI	ACCGGT	1 cut(s)	430
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	2 cut(s)	625, 661
DdeI	CTNAG	2 cut(s)	241, 534
DpnI	GATC	2 cut(s)	6, 659
DpnII	GATC	2 cut(s)	4, 657
EaeI	YGGCCR	2 cut(s)	294, 339
EagI	CGGCCG	1 cut(s)	339
EciI	GGCGGA	2 cut(s)	181, 306
EclXI	CGGCCG	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	554
Eco31I	GGTCTC	1 cut(s)	530
Eco47I	GGWCC	3 cut(s)	500, 563, 575
Eco52I	CGGCCG	1 cut(s)	339
Eco57I	CTGAAG	2 cut(s)	471, 576
EcoT38I	GRGCYC	1 cut(s)	554
FaeI	CATG	2 cut(s)	628, 664
FaiI	YATR	4 cut(s)	20, 626, 656, 662
FaqI	GGGAC	2 cut(s)	199, 404
FatI	CATG	2 cut(s)	624, 660
FauI	CCCGC	5 cut(s)	169, 178, 313, 385, 529
FbaI	TGATCA	1 cut(s)	657
FokI	GGATG	2 cut(s)	175, 660
FriOI	GRGCYC	1 cut(s)	554
FspBI	CTAG	1 cut(s)	676
GlaI	GCGC	3 cut(s)	358, 360, 589
GsaI	CCCAGC	1 cut(s)	221
HaeIII	GGCC	3 cut(s)	239, 296, 341
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	3 cut(s)	359, 361, 590
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	628, 664
Hin6I	GCGC	3 cut(s)	357, 359, 588
HinP1I	GCGC	3 cut(s)	357, 359, 588
HinfI	GANTC	1 cut(s)	481
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	4 cut(s)	59, 138, 249, 478
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	1 cut(s)	518
Hpy99I	CGWCG	4 cut(s)	50, 59, 230, 275
HpyAV	CCTTC	6 cut(s)	40, 210, 495, 576, 588, 607
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	39, 329, 619, 641
HpyF10VI	GCNNNNNNNGC	9 cut(s)	104, 170, 227, 236, 251, 335, 365, 458, 464
HpyF3I	CTNAG	2 cut(s)	241, 534
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	2 cut(s)	628, 664
HspAI	GCGC	3 cut(s)	357, 359, 588
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	657
Kzo9I	GATC	2 cut(s)	4, 657
Lsp1109I	GCAGC	6 cut(s)	21, 313, 385, 445, 478, 602
MaeI	CTAG	1 cut(s)	676
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	2 cut(s)	6, 659
MbiI	CCGCTC	3 cut(s)	197, 257, 281
MboI	GATC	2 cut(s)	4, 657
MhlI	GDGCHC	1 cut(s)	554
MlsI	TGGCCA	1 cut(s)	296
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	4 cut(s)	37, 161, 272, 308
MnlI	CCTC	7 cut(s)	53, 250, 312, 384, 450, 454, 499
Mox20I	TGGCCA	1 cut(s)	296
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	646
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	3 cut(s)	338, 398, 491
MspR9I	CCNGG	2 cut(s)	498, 543
MvnI	CGCG	3 cut(s)	308, 359, 380
MwoI	GCNNNNNNNGC	9 cut(s)	104, 170, 227, 236, 251, 335, 365, 458, 464
NaeI	GCCGGC	1 cut(s)	52
NciI	CCSGG	2 cut(s)	498, 543
NdeII	GATC	2 cut(s)	4, 657
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	628, 664
NlaIV	GGNNCC	1 cut(s)	468
PaqCI	CACCTGC	1 cut(s)	463
PauI	GCGCGC	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	430
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
Psp1406I	AACGTT	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	3 cut(s)	500, 563, 575
PstNI	CAGNNNCTG	1 cut(s)	509
PteI	GCGCGC	1 cut(s)	357
PvuII	CAGCTG	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	646
Sau3AI	GATC	2 cut(s)	4, 657
Sau96I	GGNCC	3 cut(s)	500, 563, 575
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	2 cut(s)	498, 543
SduI	GDGCHC	1 cut(s)	554
SfcI	CTRYAG	1 cut(s)	333
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	3 cut(s)	500, 563, 575
SmiMI	CAYNNNNRTG	1 cut(s)	646
SspMI	CTAG	1 cut(s)	676
StyD4I	CCNGG	2 cut(s)	496, 541
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	635
TauI	GCSGC	6 cut(s)	197, 257, 278, 281, 341, 588
TseI	GCWGC	6 cut(s)	9, 326, 398, 458, 491, 590
TspDTI	ATGAA	1 cut(s)	22
VpaK11BI	GGWCC	3 cut(s)	500, 563, 575
XspI	CTAG	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.