Rh6DG057500

Classical arabinogalactan protein 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003772
Physical Location & Seq
Forward (+)
5911531 .. 5913470
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG057500.1

Sequence Viewer

Length: 684 bp
ATGGGTCGCAATGCCTTGTTCTTCCTAGGCTTCCTTTGCATTGCGATCGCCGGAGTCGGAGGCCAATCTCCCGCCACCTCACCCACCTCCACTCCAGCTCCTCCAACCCCCACTACTCCACCACCGGTCACCTCATCCCCACCACCAGCTGCCACCTCACCTCCCCCAGCTGCCGCCTCACCACCACCGGTGACCGCATCACCACCACCAGCCACTCCTCCTCCAGTCAGCGCACCCCCGCCGGCCACTCCACCTCCGGCCACCCCACCACCAGTCAGCGCTCCCCCTCCGGCCACTCCACCACCCGCAACTCCTCCTCCGGCTACTCCACCACCCGCCACTCCTCCCCCGGCAACTCCACCACCGGCCACCCCTCCCCCGGCAACCCCACCTCCGGCAACTCCTCCTCCGGCCACTCCACCTCCAGCTCCTCTTGCATCACCCCCAGCTCTGGTCCCAGCTCCATCTCCCACGGTGAAATCTCCAGCTTTGGCTCCAACTCCTGCAGCTCTTTCGCCGGGCCCACCAGCGCCGCCTGTCGGAGCTCCTGGTCCCAGCATCGAGGCAGCCTCTCCGGGCCCGTCTCAGTCGTCTGATCAGAGTGGAGTAGAGAAGATGTGGACAATGCAGAAGATGGTTGGGAGCTTGTTGTTCGGATGGGCTCTTCTCAGCTTGATGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

21.67

Weight (kDa)

7.93

Isoelectric Point (pI)

110.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 72, 174, 195, 239, 306, 336, 533
AcoI YGGCCR 5 cut(s) 243, 258, 291, 366, 411
AfeI AGCGCT 1 cut(s) 280
AfiI CCNNNNNNNGG 4 cut(s) 379, 394, 451, 539
AgeI ACCGGT 2 cut(s) 124, 187
AjnI CCWGG 1 cut(s) 547
Alw21I GWGCWC 1 cut(s) 547
Alw26I GTCTC 1 cut(s) 588
Aor51HI AGCGCT 1 cut(s) 280
AoxI GGCC 8 cut(s) 61, 243, 258, 291, 366, 411, 520, 577
ApaI GGGCCC 2 cut(s) 524, 581
ApeKI GCWGC 4 cut(s) 149, 170, 506, 566
AsiGI ACCGGT 2 cut(s) 124, 187
AsiSI GCGATCGC 1 cut(s) 48
AspA2I CCTAGG 1 cut(s) 25
AspLEI GCGC 3 cut(s) 233, 281, 532
AspS9I GGNCC 6 cut(s) 454, 520, 521, 551, 577, 578
AsuC2I CCSGG 4 cut(s) 350, 380, 519, 576
AsuHPI GGTGA 8 cut(s) 72, 121, 150, 171, 192, 202, 432, 487
AvaII GGWCC 2 cut(s) 454, 551
AvrII CCTAGG 1 cut(s) 25
BaeGI GKGCMC 2 cut(s) 524, 581
BanII GRGCYC 4 cut(s) 524, 547, 581, 664
Bbv12I GWGCWC 1 cut(s) 547
BbvI GCAGC 4 cut(s) 136, 157, 518, 578
BccI CCATC 3 cut(s) 472, 628, 651
BcgI CGANNNNNNTGC 4 cut(s) 28, 62, 495, 529
BciT130I CCWGG 1 cut(s) 549
BclI TGATCA 1 cut(s) 595
BcnI CCSGG 4 cut(s) 350, 380, 519, 576
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 504
BfoI RGCGCY 2 cut(s) 282, 533
BisI GCNGC 6 cut(s) 150, 171, 174, 507, 533, 567
BlnI CCTAGG 1 cut(s) 25
BlsI GCNGC 6 cut(s) 151, 172, 175, 508, 534, 568
Bme1390I CCNGG 5 cut(s) 350, 380, 519, 549, 576
Bme18I GGWCC 2 cut(s) 454, 551
BmgT120I GGNCC 6 cut(s) 454, 520, 521, 551, 577, 578
BmiI GGNNCC 5 cut(s) 456, 495, 522, 553, 579
BmrFI CCNGG 5 cut(s) 350, 380, 519, 549, 576
BmsI GCATC 4 cut(s) 206, 446, 567, 666
BplI GAGNNNNNCTC 2 cut(s) 554, 586
BpmI CTGGAG 4 cut(s) 78, 207, 408, 468
BpuMI CCSGG 4 cut(s) 350, 380, 519, 576
BsaJI CCNNGG 4 cut(s) 25, 348, 378, 471
BsaWI WCCGGW 2 cut(s) 124, 187
Bsc4I CCNNNNNNNGG 4 cut(s) 379, 394, 451, 539
Bse118I RCCGGY 4 cut(s) 124, 187, 241, 364
Bse1I ACTGG 2 cut(s) 224, 272
Bse3DI GCAATG 2 cut(s) 16, 39
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 4 cut(s) 25, 348, 378, 471
BseGI GGATG 2 cut(s) 134, 662
BseLI CCNNNNNNNGG 4 cut(s) 379, 394, 451, 539
BseMI GCAATG 2 cut(s) 16, 39
BseMII CTCAG 2 cut(s) 599, 682
BseNI ACTGG 2 cut(s) 224, 272
BseRI GAGGAG 9 cut(s) 90, 207, 210, 303, 306, 333, 393, 396, 420
BseSI GKGCMC 2 cut(s) 524, 581
BseXI GCAGC 4 cut(s) 136, 157, 518, 578
BseYI CCCAGC 4 cut(s) 166, 445, 457, 554
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 8 cut(s) 63, 245, 260, 293, 368, 413, 522, 579
BshTI ACCGGT 2 cut(s) 124, 187
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 547
BslFI GGGAC 2 cut(s) 440, 537
BslI CCNNNNNNNGG 4 cut(s) 379, 394, 451, 539
BsmAI GTCTC 1 cut(s) 588
BsmBI CGTCTC 1 cut(s) 588
BsmFI GGGAC 2 cut(s) 440, 537
BsnI GGCC 8 cut(s) 63, 245, 260, 293, 368, 413, 522, 579
Bsp120I GGGCCC 2 cut(s) 520, 577
Bsp1286I GDGCHC 4 cut(s) 524, 547, 581, 664
Bsp143I GATC 2 cut(s) 45, 595
BspACI CCGC 7 cut(s) 72, 174, 195, 239, 306, 336, 533
BspANI GGCC 8 cut(s) 63, 245, 260, 293, 368, 413, 522, 579
BspCNI CTCAG 2 cut(s) 598, 681
BspLI GGNNCC 5 cut(s) 456, 495, 522, 553, 579
BspMAI CTGCAG 1 cut(s) 508
BspQI GCTCTTC 1 cut(s) 669
BsrDI GCAATG 2 cut(s) 16, 39
BsrFI RCCGGY 4 cut(s) 124, 187, 241, 364
BsrI ACTGG 2 cut(s) 224, 272
BssAI RCCGGY 4 cut(s) 124, 187, 241, 364
BssECI CCNNGG 4 cut(s) 25, 348, 378, 471
BssMI GATC 2 cut(s) 45, 595
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 1 cut(s) 669
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 585, 668
BstDSI CCRYGG 1 cut(s) 471
BstEII GGTNACC 2 cut(s) 127, 190
BstF5I GGATG 2 cut(s) 134, 662
BstH2I RGCGCY 2 cut(s) 282, 533
BstHHI GCGC 3 cut(s) 233, 281, 532
BstKTI GATC 2 cut(s) 48, 598
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 2 cut(s) 45, 595
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 36, 434
BstNI CCWGG 1 cut(s) 549
BstPI GGTNACC 2 cut(s) 127, 190
BstSCI CCNGG 5 cut(s) 348, 378, 517, 547, 574
BstSFI CTRYAG 1 cut(s) 504
BstSLI GKGCMC 2 cut(s) 524, 581
BstV1I GCAGC 4 cut(s) 136, 157, 518, 578
BsuRI GGCC 8 cut(s) 63, 245, 260, 293, 368, 413, 522, 579
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 2 cut(s) 134, 662
Cac8I GCNNGC 1 cut(s) 243
CfoI GCGC 3 cut(s) 233, 281, 532
Cfr10I RCCGGY 4 cut(s) 124, 187, 241, 364
Cfr13I GGNCC 6 cut(s) 454, 520, 521, 551, 577, 578
CspAI ACCGGT 2 cut(s) 124, 187
DdeI CTNAG 2 cut(s) 585, 668
DpnI GATC 2 cut(s) 47, 597
DpnII GATC 2 cut(s) 45, 595
EaeI YGGCCR 5 cut(s) 243, 258, 291, 366, 411
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
Ecl136II GAGCTC 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 25
Eco24I GRGCYC 4 cut(s) 524, 547, 581, 664
Eco47I GGWCC 2 cut(s) 454, 551
Eco47III AGCGCT 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 545
Eco91I GGTNACC 2 cut(s) 127, 190
EcoICRI GAGCTC 1 cut(s) 545
EcoO65I GGTNACC 2 cut(s) 127, 190
EcoRII CCWGG 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 25
EcoT38I GRGCYC 4 cut(s) 524, 547, 581, 664
ErhI CCWWGG 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 588
FaqI GGGAC 2 cut(s) 440, 537
FauI CCCGC 4 cut(s) 79, 246, 313, 343
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 6 cut(s) 150, 171, 174, 507, 533, 567
FokI GGATG 2 cut(s) 121, 669
FriOI GRGCYC 4 cut(s) 524, 547, 581, 664
Fsp4HI GCNGC 6 cut(s) 150, 171, 174, 507, 533, 567
FspBI CTAG 1 cut(s) 26
GlaI GCGC 3 cut(s) 232, 280, 531
GluI GCNGC 6 cut(s) 150, 171, 174, 507, 533, 567
GsaI CCCAGC 4 cut(s) 170, 449, 461, 558
GsuI CTGGAG 4 cut(s) 78, 207, 408, 468
HaeII RGCGCY 2 cut(s) 282, 533
HaeIII GGCC 8 cut(s) 63, 245, 260, 293, 368, 413, 522, 579
HhaI GCGC 3 cut(s) 233, 281, 532
Hin6I GCGC 3 cut(s) 231, 279, 530
HinP1I GCGC 3 cut(s) 231, 279, 530
HinfI GANTC 1 cut(s) 54
HphI GGTGA 8 cut(s) 72, 121, 150, 171, 192, 202, 432, 487
Hpy166II GTNNAC 1 cut(s) 621
Hpy188I TCNGA 5 cut(s) 59, 542, 595, 600, 656
Hpy8I GTNNAC 1 cut(s) 621
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4V TGCA 4 cut(s) 39, 437, 506, 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 434
HpyF3I CTNAG 2 cut(s) 585, 668
HspAI GCGC 3 cut(s) 231, 279, 530
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 2 cut(s) 45, 595
LguI GCTCTTC 1 cut(s) 669
LmnI GCTCC 8 cut(s) 103, 286, 433, 466, 499, 542, 550, 642
Lsp1109I GCAGC 4 cut(s) 136, 157, 518, 578
LweI GCATC 4 cut(s) 206, 446, 567, 666
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 127, 190
MalI GATC 2 cut(s) 47, 597
MboI GATC 2 cut(s) 45, 595
MboII GAAGA 4 cut(s) 13, 625, 643, 656
MhlI GDGCHC 4 cut(s) 524, 547, 581, 664
MlyI GAGTC 1 cut(s) 63
MmeI TCCRAC 4 cut(s) 37, 128, 520, 521
MroNI GCCGGC 1 cut(s) 241
MspA1I CMGCKG 2 cut(s) 149, 170
MspR9I CCNGG 5 cut(s) 350, 380, 519, 549, 576
MvaI CCWGG 1 cut(s) 549
MwoI GCNNNNNNNGC 2 cut(s) 36, 434
NaeI GCCGGC 1 cut(s) 243
NciI CCSGG 4 cut(s) 350, 380, 519, 576
NdeII GATC 2 cut(s) 45, 595
NgoMIV GCCGGC 1 cut(s) 241
NlaIV GGNNCC 5 cut(s) 456, 495, 522, 553, 579
NmuCI GTSAC 2 cut(s) 127, 190
PciSI GCTCTTC 1 cut(s) 669
PdiI GCCGGC 1 cut(s) 243
PinAI ACCGGT 2 cut(s) 124, 187
PkrI GCNGC 6 cut(s) 151, 172, 175, 508, 534, 568
Ple19I CGATCG 1 cut(s) 48
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 547
PspEI GGTNACC 2 cut(s) 127, 190
PspFI CCCAGC 4 cut(s) 166, 445, 457, 554
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 5 cut(s) 456, 495, 522, 553, 579
PspOMI GGGCCC 2 cut(s) 520, 577
PspPI GGNCC 6 cut(s) 454, 520, 521, 551, 577, 578
PstI CTGCAG 1 cut(s) 508
PvuI CGATCG 1 cut(s) 48
PvuII CAGCTG 2 cut(s) 149, 170
RgaI GCGATCGC 1 cut(s) 48
SacI GAGCTC 1 cut(s) 547
SapI GCTCTTC 1 cut(s) 669
SatI GCNGC 6 cut(s) 150, 171, 174, 507, 533, 567
Sau3AI GATC 2 cut(s) 45, 595
Sau96I GGNCC 6 cut(s) 454, 520, 521, 551, 577, 578
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 5 cut(s) 350, 380, 519, 549, 576
SduI GDGCHC 4 cut(s) 524, 547, 581, 664
SfaAI GCGATCGC 1 cut(s) 48
SfaNI GCATC 4 cut(s) 206, 446, 567, 666
SfcI CTRYAG 1 cut(s) 504
SgfI GCGATCGC 1 cut(s) 48
SgrAI CRCCGGYG 1 cut(s) 187
SinI GGWCC 2 cut(s) 454, 551
SsiI CCGC 7 cut(s) 72, 174, 195, 239, 306, 336, 533
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 547
StyD4I CCNGG 5 cut(s) 348, 378, 517, 547, 574
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 475
TaqI TCGA 1 cut(s) 561
TauI GCSGC 2 cut(s) 176, 535
TseFI GTSAC 2 cut(s) 127, 190
TseI GCWGC 4 cut(s) 149, 170, 506, 566
Tsp45I GTSAC 2 cut(s) 127, 190
VpaK11BI GGWCC 2 cut(s) 454, 551
XmaJI CCTAGG 1 cut(s) 25
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.