Rw6G005930

Classical arabinogalactan protein 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003772
Physical Location & Seq
Forward (+)
9518160 .. 9520175
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005930.1

Sequence Viewer

Length: 681 bp
ATGAGTCGCAATGCCTTGTTCTTCCTAGGCTTCCTTTGCATTGCGGTCGCCGGAGTCGGAGGCCAATCTCCCTCTACCTCACCCACCGCCACACCAGTTCCTCCAACCCCCACTACTCCACCACCGGTCACCTCATCCCCACCCCCAGCTGCCACCTCACCTCCCCCAGCTGCCGCCTCACCACCACCAGTGACCGCATCACCACCACCAGCCACTCCTCCTCCAGTCAGCGCACCCCCGCCGGCCACTCCACCTCCTGCCACCCCACCACCAGTCAGCGCTCCCCCTCCGGCCACTCCACCTCCAGCAACTCCTCCTCCGGCGACTCCACCACCTGCCACTCCTCCCCCGGCAACTCCACCACCCGCCACCCCTCCCCCGGCAACCCCACCTCCGGCAACTCCTCCCCCGGCCACTCCACCTCCAGCTCCTCTTGCATCGCCCCCAGCTCCAGCTCCATCTCCCAAGGTGAAATCTCCGGCTCTGGCTCCAACTCCTGCAGCTCTTTCGCCGGGCCCACCATCGCCGCCTGTTGGAGCTCCTGGTCCCAGCAGCATCGAGGCAGCCTCTCCGGGCCCGTCTCAGTCGTCTGATCAGAGTGGAGTAGAGAAGATGTGGACAATGCAGAAGATGGTTGGGAGCTTGTTGTTCGGATGGGCTCTTCTCAGCTTGATGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

21.64

Weight (kDa)

9.1

Isoelectric Point (pI)

115.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AciI CCGC 7 cut(s) 44, 87, 174, 195, 239, 366, 527
AcoI YGGCCR 3 cut(s) 243, 291, 411
AfeI AGCGCT 1 cut(s) 280
AfiI CCNNNNNNNGG 3 cut(s) 379, 394, 533
AgeI ACCGGT 1 cut(s) 124
AjnI CCWGG 1 cut(s) 541
AluBI AGCT 9 cut(s) 149, 170, 428, 449, 455, 503, 539, 642, 669
AluI AGCT 9 cut(s) 149, 170, 428, 449, 455, 503, 539, 642, 669
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 1 cut(s) 585
Aor51HI AGCGCT 1 cut(s) 280
AoxI GGCC 6 cut(s) 61, 243, 291, 411, 514, 574
ApaI GGGCCC 2 cut(s) 518, 578
ApeKI GCWGC 5 cut(s) 149, 170, 500, 552, 563
AsiGI ACCGGT 1 cut(s) 124
AspA2I CCTAGG 1 cut(s) 25
AspLEI GCGC 2 cut(s) 233, 281
AspS9I GGNCC 5 cut(s) 514, 515, 545, 574, 575
AsuC2I CCSGG 5 cut(s) 350, 380, 410, 513, 573
AsuHPI GGTGA 6 cut(s) 72, 121, 150, 171, 192, 481
AvaII GGWCC 1 cut(s) 545
AvrII CCTAGG 1 cut(s) 25
BaeGI GKGCMC 2 cut(s) 518, 578
BanII GRGCYC 4 cut(s) 518, 541, 578, 661
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 5 cut(s) 136, 157, 512, 564, 575
BccI CCATC 4 cut(s) 466, 529, 625, 648
BcgI CGANNNNNNTGC 4 cut(s) 28, 62, 489, 523
BciT130I CCWGG 1 cut(s) 543
BclI TGATCA 1 cut(s) 592
BcnI CCSGG 5 cut(s) 350, 380, 410, 513, 573
BcoDI GTCTC 1 cut(s) 585
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 498
BfoI RGCGCY 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 7 cut(s) 150, 171, 174, 501, 527, 553, 564
BlnI CCTAGG 1 cut(s) 25
BlsI GCNGC 7 cut(s) 151, 172, 175, 502, 528, 554, 565
Bme1390I CCNGG 6 cut(s) 350, 380, 410, 513, 543, 573
Bme18I GGWCC 1 cut(s) 545
BmgT120I GGNCC 5 cut(s) 514, 515, 545, 574, 575
BmiI GGNNCC 4 cut(s) 489, 516, 547, 576
BmrFI CCNGG 6 cut(s) 350, 380, 410, 513, 543, 573
BmsI GCATC 4 cut(s) 206, 446, 564, 663
BplI GAGNNNNNCTC 2 cut(s) 551, 583
BpmI CTGGAG 4 cut(s) 207, 288, 408, 435
BpuMI CCSGG 5 cut(s) 350, 380, 410, 513, 573
BsaJI CCNNGG 5 cut(s) 25, 348, 378, 408, 465
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 3 cut(s) 379, 394, 533
Bse118I RCCGGY 2 cut(s) 124, 241
Bse1I ACTGG 4 cut(s) 95, 188, 224, 272
Bse3DI GCAATG 2 cut(s) 16, 39
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 5 cut(s) 25, 348, 378, 408, 465
BseGI GGATG 2 cut(s) 134, 659
BseLI CCNNNNNNNGG 3 cut(s) 379, 394, 533
BseMI GCAATG 2 cut(s) 16, 39
BseMII CTCAG 2 cut(s) 596, 679
BseNI ACTGG 4 cut(s) 95, 188, 224, 272
BseRI GAGGAG 7 cut(s) 207, 210, 303, 306, 333, 393, 420
BseSI GKGCMC 2 cut(s) 518, 578
BseXI GCAGC 5 cut(s) 136, 157, 512, 564, 575
BseYI CCCAGC 4 cut(s) 145, 166, 445, 548
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 6 cut(s) 63, 245, 293, 413, 516, 576
BshTI ACCGGT 1 cut(s) 124
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 541
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 379, 394, 533
BsmAI GTCTC 1 cut(s) 585
BsmBI CGTCTC 1 cut(s) 585
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 6 cut(s) 63, 245, 293, 413, 516, 576
Bsp120I GGGCCC 2 cut(s) 514, 574
Bsp1286I GDGCHC 4 cut(s) 518, 541, 578, 661
Bsp143I GATC 1 cut(s) 592
BspACI CCGC 7 cut(s) 44, 87, 174, 195, 239, 366, 527
BspANI GGCC 6 cut(s) 63, 245, 293, 413, 516, 576
BspCNI CTCAG 2 cut(s) 595, 678
BspLI GGNNCC 4 cut(s) 489, 516, 547, 576
BspMAI CTGCAG 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 343
BspQI GCTCTTC 1 cut(s) 666
BsrDI GCAATG 2 cut(s) 16, 39
BsrFI RCCGGY 2 cut(s) 124, 241
BsrI ACTGG 4 cut(s) 95, 188, 224, 272
BssAI RCCGGY 2 cut(s) 124, 241
BssECI CCNNGG 5 cut(s) 25, 348, 378, 408, 465
BssMI GATC 1 cut(s) 592
BssT1I CCWWGG 2 cut(s) 25, 465
Bst2UI CCWGG 1 cut(s) 543
Bst6I CTCTTC 1 cut(s) 666
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 582, 665
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 2 cut(s) 134, 659
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 2 cut(s) 233, 281
BstKTI GATC 1 cut(s) 595
BstMAI GTCTC 1 cut(s) 585
BstMBI GATC 1 cut(s) 592
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 36, 434
BstNI CCWGG 1 cut(s) 543
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 6 cut(s) 348, 378, 408, 511, 541, 571
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 2 cut(s) 518, 578
BstV1I GCAGC 5 cut(s) 136, 157, 512, 564, 575
BsuRI GGCC 6 cut(s) 63, 245, 293, 413, 516, 576
BtgZI GCGATG 2 cut(s) 423, 507
BtsCI GGATG 2 cut(s) 134, 659
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 243
CfoI GCGC 2 cut(s) 233, 281
Cfr10I RCCGGY 2 cut(s) 124, 241
Cfr13I GGNCC 5 cut(s) 514, 515, 545, 574, 575
CspAI ACCGGT 1 cut(s) 124
DdeI CTNAG 2 cut(s) 582, 665
DpnI GATC 1 cut(s) 594
DpnII GATC 1 cut(s) 592
EaeI YGGCCR 3 cut(s) 243, 291, 411
Eam1104I CTCTTC 1 cut(s) 666
EarI CTCTTC 1 cut(s) 666
Ecl136II GAGCTC 1 cut(s) 539
Eco130I CCWWGG 2 cut(s) 25, 465
Eco24I GRGCYC 4 cut(s) 518, 541, 578, 661
Eco47I GGWCC 1 cut(s) 545
Eco47III AGCGCT 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 539
Eco91I GGTNACC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 539
EcoO65I GGTNACC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 541
EcoT14I CCWWGG 2 cut(s) 25, 465
EcoT38I GRGCYC 4 cut(s) 518, 541, 578, 661
ErhI CCWWGG 2 cut(s) 25, 465
Esp3I CGTCTC 1 cut(s) 585
FaqI GGGAC 1 cut(s) 531
FauI CCCGC 2 cut(s) 246, 373
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 7 cut(s) 150, 171, 174, 501, 527, 553, 564
FokI GGATG 2 cut(s) 121, 666
FriOI GRGCYC 4 cut(s) 518, 541, 578, 661
Fsp4HI GCNGC 7 cut(s) 150, 171, 174, 501, 527, 553, 564
FspBI CTAG 1 cut(s) 26
GlaI GCGC 2 cut(s) 232, 280
GluI GCNGC 7 cut(s) 150, 171, 174, 501, 527, 553, 564
GsaI CCCAGC 4 cut(s) 149, 170, 449, 552
GsuI CTGGAG 4 cut(s) 207, 288, 408, 435
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 6 cut(s) 63, 245, 293, 413, 516, 576
HhaI GCGC 2 cut(s) 233, 281
Hin6I GCGC 2 cut(s) 231, 279
HinP1I GCGC 2 cut(s) 231, 279
HinfI GANTC 3 cut(s) 4, 54, 325
HphI GGTGA 6 cut(s) 72, 121, 150, 171, 192, 481
Hpy166II GTNNAC 1 cut(s) 618
Hpy188I TCNGA 4 cut(s) 59, 592, 597, 653
Hpy8I GTNNAC 1 cut(s) 618
HpyCH4V TGCA 4 cut(s) 39, 437, 500, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 434
HpyF3I CTNAG 2 cut(s) 582, 665
HspAI GCGC 2 cut(s) 231, 279
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 1 cut(s) 592
LguI GCTCTTC 1 cut(s) 666
LmnI GCTCC 8 cut(s) 286, 433, 454, 460, 493, 536, 544, 639
Lsp1109I GCAGC 5 cut(s) 136, 157, 512, 564, 575
LweI GCATC 4 cut(s) 206, 446, 564, 663
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 127, 190
MalI GATC 1 cut(s) 594
MboI GATC 1 cut(s) 592
MboII GAAGA 4 cut(s) 13, 622, 640, 653
MhlI GDGCHC 4 cut(s) 518, 541, 578, 661
MlyI GAGTC 3 cut(s) 13, 63, 319
MmeI TCCRAC 4 cut(s) 37, 128, 514, 515
MroNI GCCGGC 1 cut(s) 241
MspA1I CMGCKG 2 cut(s) 149, 170
MspR9I CCNGG 6 cut(s) 350, 380, 410, 513, 543, 573
MvaI CCWGG 1 cut(s) 543
MwoI GCNNNNNNNGC 2 cut(s) 36, 434
NaeI GCCGGC 1 cut(s) 243
NciI CCSGG 5 cut(s) 350, 380, 410, 513, 573
NdeII GATC 1 cut(s) 592
NgoMIV GCCGGC 1 cut(s) 241
NlaIV GGNNCC 4 cut(s) 489, 516, 547, 576
NmuCI GTSAC 2 cut(s) 127, 190
PaqCI CACCTGC 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 666
PdiI GCCGGC 1 cut(s) 243
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 7 cut(s) 151, 172, 175, 502, 528, 554, 565
PleI GAGTC 3 cut(s) 12, 62, 319
PpsI GAGTC 3 cut(s) 12, 62, 319
Psp124BI GAGCTC 1 cut(s) 541
Psp6I CCWGG 1 cut(s) 541
PspEI GGTNACC 1 cut(s) 127
PspFI CCCAGC 4 cut(s) 145, 166, 445, 548
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 4 cut(s) 489, 516, 547, 576
PspOMI GGGCCC 2 cut(s) 514, 574
PspPI GGNCC 5 cut(s) 514, 515, 545, 574, 575
PstI CTGCAG 1 cut(s) 502
PvuII CAGCTG 2 cut(s) 149, 170
SacI GAGCTC 1 cut(s) 541
SapI GCTCTTC 1 cut(s) 666
SatI GCNGC 7 cut(s) 150, 171, 174, 501, 527, 553, 564
Sau3AI GATC 1 cut(s) 592
Sau96I GGNCC 5 cut(s) 514, 515, 545, 574, 575
SchI GAGTC 3 cut(s) 13, 63, 319
ScrFI CCNGG 6 cut(s) 350, 380, 410, 513, 543, 573
SduI GDGCHC 4 cut(s) 518, 541, 578, 661
SfaNI GCATC 4 cut(s) 206, 446, 564, 663
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 1 cut(s) 545
SsiI CCGC 7 cut(s) 44, 87, 174, 195, 239, 366, 527
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 541
StyD4I CCNGG 6 cut(s) 348, 378, 408, 511, 541, 571
StyI CCWWGG 2 cut(s) 25, 465
TaqI TCGA 1 cut(s) 558
TauI GCSGC 2 cut(s) 176, 529
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 2 cut(s) 127, 190
TseI GCWGC 5 cut(s) 149, 170, 500, 552, 563
Tsp45I GTSAC 2 cut(s) 127, 190
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 545
XmaJI CCTAGG 1 cut(s) 25
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.