Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003772

Physical Location & Seq

Genomic Coordinates Reverse (-)

17605538 .. 17607050

Gene Structure 1513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGATCGCAATTTCCTCCTAACAGTTACATTGATCTGCATTGTCGTCGCCGGTGTCGGTGGCCAATCTCCTATCTCTTCTCCGACCAAATCTCCCACCACTCCTTCTGCTCCAACTACTTCCCCTACTAAATCCCCCGCCGTTACTTCTCCCACTACGGCTCCGGCGAAAACTCCAACTGCTTCGGCTTCTTCACCGGTTGAGTCACCAAAATCTCCGGCTCCTGTTAGCGAGTCGTCTCCACCACCGACACCTGTTCCAGAGAGCTCTCCTCCGGTTCCTGCACCAATGGTTTCTTCTCCAGTGAGCTCTCCACCGGTTCCAGCACCAGTAGCTGATTCTCCTCCAGCTCCGGTAGCCGCTCCGGTTGCTGATGTACCGGCTCCTGCTCCAAGCAAGCATAAGAAGACTACAAAGAAATCGAAAAAGCATCAAGCTGCACCTGCTCCGGCTCCGGAACTTCTCGGTCCACCTGCACCACCGACTGAATCTCCCGGACCTAACTCCGACGCTTTTTCTCCCGGTCCTTCCGCCGACGATCAGAGCGGAGCAGCGAGCACAAGGGTGTTGAGGAATGTAGCGGTGGGAGCGGTTGCAACCGCATGGGCCGTTCTCGTTATGGCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009987 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0031224 GO:0031225 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044425 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

20.49

Weight (kDa)

9.17

Isoelectric Point (pI)

102.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23130 AT2G23130 AT4G37450 AT4G37450
fragaria_vesca	FvH4_1g17080 FvH4_2g04630
malus_domestica	MD02G1181000.v1.1 MD05G1094200.v1.1 MD15G1291700.v1.1
prunus_persica	Prupe.6G225300_v2.0.a1 Prupe.8G139000_v2.0.a1
pyrus_communis	pycom02g14700 pycom05g09330 pycom10g08670 pycom15g25520
rosa_chinensis	RchiOBHm_Chr2g0107241 RchiOBHm_Chr6g0254241
rosa_laevigata	RLG00000014932 RLG00000017563
rosa_multiflora	Rmu_sc0000010.1_g000007 Rmu_sc0006416.1_g000027
rosa_roxburghii	Rroxscaffold_2G00136500
rosa_rugosa	Rorug02G0141300 Rorug05G0551400
rosa_samantha	Rh2AG192000 Rh2BG203900 Rh2CG197200 Rh2DG199300 Rh6AG067400 Rh6BG060500 Rh6CG060500 Rh6DG057500
rosa_wichuraiana	Rw2G015190 Rw6G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	451, 481
Acc36I	ACCTGC	2 cut(s)	451, 481
AccBSI	CCGCTC	3 cut(s)	362, 546, 590
AccIII	TCCGGA	1 cut(s)	454
AciI	CCGC	7 cut(s)	138, 360, 531, 546, 581, 590, 600
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	61
AfaI	GTAC	1 cut(s)	378
AgeI	ACCGGT	2 cut(s)	196, 316
AjuI	GAANNNNNNNTTGG	2 cut(s)	280, 312
AleI	CACNNNNGTG	1 cut(s)	563
AluBI	AGCT	5 cut(s)	267, 309, 335, 350, 437
AluI	AGCT	5 cut(s)	267, 309, 335, 350, 437
Alw21I	GWGCWC	3 cut(s)	269, 311, 560
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	335
Aor13HI	TCCGGA	1 cut(s)	454
AoxI	GGCC	2 cut(s)	61, 606
ApeKI	GCWGC	2 cut(s)	437, 551
AsiGI	ACCGGT	2 cut(s)	196, 316
AspS9I	GGNCC	4 cut(s)	467, 497, 524, 606
AsuC2I	CCSGG	2 cut(s)	495, 522
AsuHPI	GGTGA	2 cut(s)	186, 198
AvaII	GGWCC	3 cut(s)	467, 497, 524
BalI	TGGCCA	1 cut(s)	63
BanII	GRGCYC	2 cut(s)	269, 311
BbsI	GAAGAC	1 cut(s)	413
Bbv12I	GWGCWC	3 cut(s)	269, 311, 560
BbvI	GCAGC	2 cut(s)	424, 563
BceAI	ACGGC	3 cut(s)	125, 174, 593
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BcnI	CCSGG	2 cut(s)	495, 522
BcoDI	GTCTC	1 cut(s)	243
BfuAI	ACCTGC	2 cut(s)	451, 481
BisI	GCNGC	3 cut(s)	360, 438, 552
BlsI	GCNGC	3 cut(s)	361, 439, 553
Bme1390I	CCNGG	2 cut(s)	495, 522
Bme18I	GGWCC	3 cut(s)	467, 497, 524
BmgT120I	GGNCC	4 cut(s)	467, 497, 524, 606
BmiI	GGNNCC	6 cut(s)	162, 222, 279, 321, 384, 453
BmrFI	CCNGG	2 cut(s)	495, 522
BmsI	GCATC	1 cut(s)	439
BpiI	GAAGAC	1 cut(s)	413
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpmI	CTGGAG	2 cut(s)	285, 330
BpuMI	CCSGG	2 cut(s)	495, 522
BsaWI	WCCGGW	6 cut(s)	196, 274, 316, 352, 364, 454
BsaXI	ACNNNNNCTCC	6 cut(s)	76, 106, 145, 175, 475, 505
Bse118I	RCCGGY	4 cut(s)	50, 196, 316, 379
Bse1I	ACTGG	2 cut(s)	302, 329
BseAI	TCCGGA	1 cut(s)	454
BseNI	ACTGG	2 cut(s)	302, 329
BseRI	GAGGAG	2 cut(s)	261, 333
BseXI	GCAGC	2 cut(s)	424, 563
BsgI	GTGCAG	3 cut(s)	267, 423, 459
BshFI	GGCC	2 cut(s)	63, 608
BshTI	ACCGGT	2 cut(s)	196, 316
BsiHKAI	GWGCWC	3 cut(s)	269, 311, 560
BsmAI	GTCTC	1 cut(s)	243
BsmBI	CGTCTC	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	2 cut(s)	63, 608
Bsp1286I	GDGCHC	3 cut(s)	269, 311, 560
Bsp13I	TCCGGA	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	4, 33, 538
BspACI	CCGC	7 cut(s)	138, 360, 531, 546, 581, 590, 600
BspANI	GGCC	2 cut(s)	63, 608
BspEI	TCCGGA	1 cut(s)	454
BspLI	GGNNCC	6 cut(s)	162, 222, 279, 321, 384, 453
BspMI	ACCTGC	2 cut(s)	451, 481
BspPI	GGATC	1 cut(s)	12
BsrBI	CCGCTC	3 cut(s)	362, 546, 590
BsrFI	RCCGGY	4 cut(s)	50, 196, 316, 379
BsrI	ACTGG	2 cut(s)	302, 329
BssAI	RCCGGY	4 cut(s)	50, 196, 316, 379
BssMI	GATC	3 cut(s)	4, 33, 538
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	398, 556
BstKTI	GATC	3 cut(s)	7, 36, 541
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	3 cut(s)	4, 33, 538
BstMWI	GCNNNNNNNGC	5 cut(s)	332, 356, 368, 443, 587
BstSCI	CCNGG	2 cut(s)	493, 520
BstV1I	GCAGC	2 cut(s)	424, 563
BstV2I	GAAGAC	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	63, 608
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	2 cut(s)	451, 481
Cac8I	GCNNGC	2 cut(s)	398, 556
CaiI	CAGNNNCTG	1 cut(s)	335
Cfr10I	RCCGGY	4 cut(s)	50, 196, 316, 379
Cfr13I	GGNCC	4 cut(s)	467, 497, 524, 606
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	377
CspAI	ACCGGT	2 cut(s)	196, 316
CviAII	CATG	1 cut(s)	603
CviQI	GTAC	1 cut(s)	377
DpnI	GATC	3 cut(s)	6, 35, 540
DpnII	GATC	3 cut(s)	4, 33, 538
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	520
Ecl136II	GAGCTC	2 cut(s)	267, 309
Eco24I	GRGCYC	2 cut(s)	269, 311
Eco47I	GGWCC	3 cut(s)	467, 497, 524
Eco53kI	GAGCTC	2 cut(s)	267, 309
EcoICRI	GAGCTC	2 cut(s)	267, 309
EcoT38I	GRGCYC	2 cut(s)	269, 311
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	1 cut(s)	606
FaiI	YATR	3 cut(s)	402, 604, 620
FatI	CATG	1 cut(s)	602
FauI	CCCGC	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	360, 438, 552
FriOI	GRGCYC	2 cut(s)	269, 311
Fsp4HI	GCNGC	3 cut(s)	360, 438, 552
GluI	GCNGC	3 cut(s)	360, 438, 552
GsuI	CTGGAG	2 cut(s)	285, 330
HaeIII	GGCC	2 cut(s)	63, 608
HgaI	GACGC	1 cut(s)	518
Hin1II	CATG	1 cut(s)	606
HinfI	GANTC	4 cut(s)	203, 233, 338, 488
HphI	GGTGA	2 cut(s)	186, 198
Hpy166II	GTNNAC	1 cut(s)	470
Hpy188I	TCNGA	3 cut(s)	84, 508, 543
Hpy188III	TCNNGA	2 cut(s)	260, 455
Hpy8I	GTNNAC	1 cut(s)	470
Hpy99I	CGWCG	3 cut(s)	50, 512, 539
HpyAV	CCTTC	2 cut(s)	114, 537
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	5 cut(s)	39, 284, 440, 476, 596
HpyF10VI	GCNNNNNNNGC	5 cut(s)	332, 356, 368, 443, 587
Hsp92II	CATG	1 cut(s)	606
Kpn2I	TCCGGA	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	4, 33, 538
Lsp1109I	GCAGC	2 cut(s)	424, 563
LweI	GCATC	1 cut(s)	439
MaeIII	GTNAC	3 cut(s)	25, 142, 204
MalI	GATC	3 cut(s)	6, 35, 540
MbiI	CCGCTC	3 cut(s)	362, 546, 590
MboI	GATC	3 cut(s)	4, 33, 538
MboII	GAAGA	4 cut(s)	69, 183, 288, 418
MhlI	GDGCHC	3 cut(s)	269, 311, 560
MlsI	TGGCCA	1 cut(s)	63
MluCI	AATT	1 cut(s)	10
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	2 cut(s)	212, 242
MmeI	TCCRAC	4 cut(s)	107, 137, 200, 531
MnlI	CCTC	4 cut(s)	26, 282, 354, 564
Mox20I	TGGCCA	1 cut(s)	63
MroI	TCCGGA	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	495, 522
Mva1269I	GAATGC	1 cut(s)	623
MwoI	GCNNNNNNNGC	5 cut(s)	332, 356, 368, 443, 587
NciI	CCSGG	2 cut(s)	495, 522
NdeII	GATC	3 cut(s)	4, 33, 538
NlaIII	CATG	1 cut(s)	606
NlaIV	GGNNCC	6 cut(s)	162, 222, 279, 321, 384, 453
NmuCI	GTSAC	1 cut(s)	204
OliI	CACNNNNGTG	1 cut(s)	563
PaqCI	CACCTGC	2 cut(s)	451, 481
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PctI	GAATGC	1 cut(s)	623
PfeI	GAWTC	2 cut(s)	338, 488
PfoI	TCCNGGA	1 cut(s)	493
PinAI	ACCGGT	2 cut(s)	196, 316
PkrI	GCNGC	3 cut(s)	361, 439, 553
PleI	GAGTC	2 cut(s)	211, 241
PpsI	GAGTC	2 cut(s)	211, 241
Psp124BI	GAGCTC	2 cut(s)	269, 311
PspN4I	GGNNCC	6 cut(s)	162, 222, 279, 321, 384, 453
PspPI	GGNCC	4 cut(s)	467, 497, 524, 606
PstNI	CAGNNNCTG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	563
SacI	GAGCTC	2 cut(s)	269, 311
SatI	GCNGC	3 cut(s)	360, 438, 552
Sau3AI	GATC	3 cut(s)	4, 33, 538
Sau96I	GGNCC	4 cut(s)	467, 497, 524, 606
SchI	GAGTC	2 cut(s)	212, 242
ScrFI	CCNGG	2 cut(s)	495, 522
SduI	GDGCHC	3 cut(s)	269, 311, 560
SetI	ASST	9 cut(s)	256, 269, 311, 337, 352, 439, 445, 475, 502
SfaNI	GCATC	1 cut(s)	439
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	3 cut(s)	467, 497, 524
SmiMI	CAYNNNNRTG	1 cut(s)	563
Sse9I	AATT	1 cut(s)	10
SsiI	CCGC	7 cut(s)	138, 360, 531, 546, 581, 590, 600
SstI	GAGCTC	2 cut(s)	269, 311
StyD4I	CCNGG	2 cut(s)	493, 520
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	422
TaqII	GACCGA	1 cut(s)	455
TasI	AATT	1 cut(s)	10
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	2 cut(s)	338, 488
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	2 cut(s)	437, 551
Tsp45I	GTSAC	1 cut(s)	204
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	3 cut(s)	467, 497, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.